Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00106 * 2 1 4 4 H 1.48506 * 109.47335 * 270.00224 * 3 2 1 5 5 H 1.48498 * 109.47197 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99726 * 3 2 1 7 7 C 1.38819 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99982 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99958 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.92193 * 302.55361 * 11 10 9 13 13 C 1.55165 * 111.00458 * 66.45461 * 11 10 9 14 14 C 1.54327 * 102.94078 * 153.57403 * 13 11 10 15 15 N 1.47022 * 107.27336 * 337.80587 * 14 13 11 16 16 C 1.34777 * 125.64528 * 178.90269 * 15 14 13 17 17 O 1.21282 * 119.99501 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00291 * 0.02824 * 16 15 14 19 19 C 1.50692 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.38459 * 120.01983 * 269.72588 * 19 18 16 21 21 F 1.35103 * 120.01987 * 0.02562 * 20 19 18 22 22 C 1.38450 * 119.96163 * 179.72251 * 20 19 18 23 23 C 1.38227 * 120.00243 * 0.52901 * 22 20 19 24 24 C 1.38204 * 120.03347 * 359.76629 * 23 22 20 25 25 C 1.38294 * 120.02194 * 89.99888 * 19 18 16 26 26 Cl 1.73600 * 119.99514 * 0.02668 * 25 19 18 27 27 C 1.47425 * 108.70334 * 358.94217 * 15 14 13 28 28 H 0.96994 * 120.00014 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00150 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46812 * 59.99683 * 10 9 7 31 31 H 1.09001 * 109.46566 * 299.99868 * 10 9 7 32 32 H 1.08993 * 110.71917 * 35.21134 * 13 11 10 33 33 H 1.09002 * 110.71751 * 271.93705 * 13 11 10 34 34 H 1.08997 * 109.87800 * 97.22770 * 14 13 11 35 35 H 1.09000 * 109.87987 * 218.23010 * 14 13 11 36 36 H 1.08998 * 109.47080 * 299.99828 * 18 16 15 37 37 H 1.09005 * 109.47183 * 59.99784 * 18 16 15 38 38 H 1.07998 * 120.00146 * 180.28105 * 22 20 19 39 39 H 1.07993 * 119.98362 * 179.74758 * 23 22 20 40 40 H 1.08005 * 119.97643 * 179.97438 * 24 23 22 41 41 H 1.08997 * 110.36855 * 142.96531 * 27 15 14 42 42 H 1.08999 * 110.36490 * 265.17846 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1122 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0009 12 1 5.8989 -1.5808 -0.8585 13 6 6.0574 -1.5220 1.3276 14 6 7.5393 -1.9359 1.4479 15 7 7.7229 -3.1438 0.6300 16 6 8.8843 -3.8049 0.4553 17 8 8.9192 -4.7945 -0.2451 18 6 10.1394 -3.3147 1.1300 19 6 11.2881 -4.2233 0.7754 20 6 11.5737 -5.3210 1.5695 21 9 10.8223 -5.5784 2.6624 22 6 12.6257 -6.1582 1.2393 23 6 13.3971 -5.8919 0.1237 24 6 13.1158 -4.7928 -0.6655 25 6 12.0611 -3.9581 -0.3402 26 17 11.7087 -2.5776 -1.3321 27 6 6.4265 -3.5114 0.0320 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3622 0.0004 30 1 3.8491 -3.0415 -0.8919 31 1 3.8485 -3.0434 0.8882 32 1 5.4792 -1.9107 2.1658 33 1 5.9638 -0.4379 1.2629 34 1 8.1789 -1.1355 1.0760 35 1 7.7810 -2.1499 2.4889 36 1 10.3602 -2.3014 0.7945 37 1 9.9954 -3.3164 2.2105 38 1 12.8462 -7.0172 1.8557 39 1 14.2202 -6.5429 -0.1313 40 1 13.7194 -4.5853 -1.5368 41 1 6.5696 -3.8939 -0.9785 42 1 5.9207 -4.2535 0.6497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567149984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = -46.678026 kcal Electronic energy + Delta-G solvation = -26541.461535 eV Core-core repulsion = 22462.057835 eV Total energy + Delta-G solvation = -4079.403699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.33243 -40.42497 -39.42345 -37.70648 -36.87424 -34.88570 -33.46406 -32.23518 -30.87707 -30.63004 -29.40188 -28.17506 -25.48710 -23.39314 -23.26784 -22.40216 -21.93131 -20.22984 -19.36409 -18.16337 -17.69952 -17.35575 -17.24857 -16.54553 -16.05127 -15.96901 -15.34500 -15.16395 -14.77965 -14.45552 -14.05807 -13.91955 -13.80753 -13.58593 -13.51976 -13.25069 -12.97438 -12.76618 -12.52824 -12.46982 -12.03786 -11.87089 -11.82101 -11.77280 -11.61925 -11.27815 -10.97373 -10.70937 -10.64377 -10.52566 -10.16079 -10.05772 -9.61140 -9.26718 -9.13825 -8.92597 -8.72230 -7.26194 -5.78687 -3.14645 0.52685 0.59042 1.61901 2.49572 2.74932 3.07803 3.33665 3.36931 3.42990 3.78518 4.00535 4.25029 4.31605 4.37102 4.56488 4.61024 4.71667 4.75105 4.87834 4.89166 5.01057 5.12324 5.18323 5.33928 5.41098 5.49701 5.53610 5.55017 5.60325 5.72312 5.73331 5.79498 5.86287 5.91976 6.08048 6.15922 6.23898 6.30257 6.60635 6.70697 7.39736 7.97131 8.02157 8.40090 9.18811 9.90835 10.10527 11.39709 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002300 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.220036 B =12170.080820 C =12701.669404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.084 0.916 13 C -0.124 4.124 14 C 0.097 3.903 15 N -0.616 5.616 16 C 0.535 3.465 17 O -0.534 6.534 18 C -0.105 4.105 19 C -0.091 4.091 20 C 0.125 3.875 21 F -0.129 7.129 22 C -0.148 4.148 23 C -0.079 4.079 24 C -0.120 4.120 25 C 0.003 3.997 26 Cl -0.052 7.052 27 C 0.115 3.885 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.079 0.921 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.908 -8.607 3.233 33.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.041 3.959 11 C -0.130 4.130 12 H 0.102 0.898 13 C -0.161 4.161 14 C -0.026 4.026 15 N -0.350 5.350 16 C 0.323 3.677 17 O -0.410 6.410 18 C -0.145 4.145 19 C -0.093 4.093 20 C 0.106 3.894 21 F -0.108 7.108 22 C -0.167 4.167 23 C -0.097 4.097 24 C -0.139 4.139 25 C -0.024 4.024 26 Cl -0.022 7.022 27 C -0.008 4.008 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.097 0.903 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 31.690 -9.148 2.808 33.103 hybrid contribution 0.288 1.422 0.173 1.461 sum 31.978 -7.725 2.981 33.033 Atomic orbital electron populations 1.69701 1.05105 1.25832 1.57523 1.24686 0.95251 0.97227 1.02067 0.86534 0.79142 0.84975 0.77755 1.21116 1.21745 1.20342 1.19056 0.80555 0.94775 1.43013 0.89180 1.42648 1.04019 1.02078 1.91244 1.20521 0.86773 0.89524 0.99072 1.22625 0.96815 0.95509 0.98018 0.89757 1.22677 0.92966 1.01769 0.98734 1.22168 0.98672 0.86773 0.95018 1.48478 1.08525 1.28641 1.49352 1.19827 0.83211 0.83264 0.81441 1.90726 1.85276 1.25728 1.39301 1.20634 0.90597 1.00141 1.03125 1.19111 0.97839 0.96902 0.95477 1.17273 0.91851 0.94990 0.85321 1.91528 1.74924 1.93454 1.50860 1.21234 0.95584 1.00436 0.99482 1.20965 0.99037 0.96384 0.93331 1.21101 0.97001 0.94671 1.01105 1.20525 0.97017 0.92001 0.92830 1.98396 1.94557 1.40999 1.68285 1.22245 0.82107 0.97212 0.99207 0.93040 0.80665 0.95086 0.95098 0.89783 0.89844 0.91422 0.91285 0.86958 0.87248 0.83936 0.83893 0.84090 0.90267 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.20 13.97 55.49 0.78 -28.43 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.34 5.26 -59.91 -0.31 -17.66 16 10 C 0.17 3.11 5.71 -4.04 -0.02 3.09 16 11 C -0.11 -1.59 3.10 -88.47 -0.27 -1.86 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 13 C -0.12 -1.56 6.13 -24.89 -0.15 -1.71 16 14 C 0.10 1.00 6.49 -3.06 -0.02 0.98 16 15 N -0.62 -7.81 3.33 -170.52 -0.57 -8.38 16 16 C 0.53 7.18 7.84 -10.99 -0.09 7.09 16 17 O -0.53 -9.03 16.29 5.56 0.09 -8.94 16 18 C -0.11 -1.06 4.45 -29.04 -0.13 -1.19 16 19 C -0.09 -0.95 4.38 -104.52 -0.46 -1.41 16 20 C 0.13 1.26 7.24 -39.42 -0.29 0.98 16 21 F -0.13 -1.42 16.47 2.25 0.04 -1.38 16 22 C -0.15 -1.12 10.03 -39.51 -0.40 -1.52 16 23 C -0.08 -0.49 10.04 -39.60 -0.40 -0.89 16 24 C -0.12 -0.89 9.83 -39.54 -0.39 -1.28 16 25 C 0.00 0.03 6.31 -39.51 -0.25 -0.22 16 26 Cl -0.05 -0.50 27.30 -51.86 -1.42 -1.91 16 27 C 0.11 1.57 6.37 -2.53 -0.02 1.55 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.36 8.00 5.40 -40.82 -0.22 7.78 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.08 1.10 8.01 -51.93 -0.42 0.69 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.97 6.90 -51.93 -0.36 0.61 16 37 H 0.11 0.93 7.63 -51.93 -0.40 0.53 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 42 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -34.15 368.36 -9.31 -43.46 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.62 Total: 4.07 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -3.13 Total: -3.38 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.11 Total: -54.46 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.42 Total: -1.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.15 -9.31 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567149984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.220 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds