Wall clock time and date at job start Sat Apr 11 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00106 * 2 1 4 4 H 1.48506 * 109.47335 * 270.00224 * 3 2 1 5 5 H 1.48498 * 109.47197 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99726 * 3 2 1 7 7 C 1.38819 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99982 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99855 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99958 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.92193 * 302.55361 * 11 10 9 13 13 C 1.55165 * 111.00458 * 66.45461 * 11 10 9 14 14 C 1.54327 * 102.94078 * 153.57403 * 13 11 10 15 15 N 1.47022 * 107.27336 * 337.80587 * 14 13 11 16 16 C 1.34777 * 125.64528 * 178.90269 * 15 14 13 17 17 O 1.21282 * 119.99501 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00291 * 0.02824 * 16 15 14 19 19 C 1.50692 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.38459 * 120.01983 * 269.72588 * 19 18 16 21 21 F 1.35103 * 120.01987 * 0.02562 * 20 19 18 22 22 C 1.38450 * 119.96163 * 179.72251 * 20 19 18 23 23 C 1.38227 * 120.00243 * 0.52901 * 22 20 19 24 24 C 1.38204 * 120.03347 * 359.76629 * 23 22 20 25 25 C 1.38294 * 120.02194 * 89.99888 * 19 18 16 26 26 Cl 1.73600 * 119.99514 * 0.02668 * 25 19 18 27 27 C 1.47425 * 108.70334 * 358.94217 * 15 14 13 28 28 H 0.96994 * 120.00014 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00150 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46812 * 59.99683 * 10 9 7 31 31 H 1.09001 * 109.46566 * 299.99868 * 10 9 7 32 32 H 1.08993 * 110.71917 * 35.21134 * 13 11 10 33 33 H 1.09002 * 110.71751 * 271.93705 * 13 11 10 34 34 H 1.08997 * 109.87800 * 97.22770 * 14 13 11 35 35 H 1.09000 * 109.87987 * 218.23010 * 14 13 11 36 36 H 1.08998 * 109.47080 * 299.99828 * 18 16 15 37 37 H 1.09005 * 109.47183 * 59.99784 * 18 16 15 38 38 H 1.07998 * 120.00146 * 180.28105 * 22 20 19 39 39 H 1.07993 * 119.98362 * 179.74758 * 23 22 20 40 40 H 1.08005 * 119.97643 * 179.97438 * 24 23 22 41 41 H 1.08997 * 110.36855 * 142.96531 * 27 15 14 42 42 H 1.08999 * 110.36490 * 265.17846 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1122 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0009 12 1 5.8989 -1.5808 -0.8585 13 6 6.0574 -1.5220 1.3276 14 6 7.5393 -1.9359 1.4479 15 7 7.7229 -3.1438 0.6300 16 6 8.8843 -3.8049 0.4553 17 8 8.9192 -4.7945 -0.2451 18 6 10.1394 -3.3147 1.1300 19 6 11.2881 -4.2233 0.7754 20 6 11.5737 -5.3210 1.5695 21 9 10.8223 -5.5784 2.6624 22 6 12.6257 -6.1582 1.2393 23 6 13.3971 -5.8919 0.1237 24 6 13.1158 -4.7928 -0.6655 25 6 12.0611 -3.9581 -0.3402 26 17 11.7087 -2.5776 -1.3321 27 6 6.4265 -3.5114 0.0320 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3622 0.0004 30 1 3.8491 -3.0415 -0.8919 31 1 3.8485 -3.0434 0.8882 32 1 5.4792 -1.9107 2.1658 33 1 5.9638 -0.4379 1.2629 34 1 8.1789 -1.1355 1.0760 35 1 7.7810 -2.1499 2.4889 36 1 10.3602 -2.3014 0.7945 37 1 9.9954 -3.3164 2.2105 38 1 12.8462 -7.0172 1.8557 39 1 14.2202 -6.5429 -0.1313 40 1 13.7194 -4.5853 -1.5368 41 1 6.5696 -3.8939 -0.9785 42 1 5.9207 -4.2535 0.6497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567149984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:36 Heat of formation + Delta-G solvation = -67.407832 kcal Electronic energy + Delta-G solvation = -26542.360446 eV Core-core repulsion = 22462.057835 eV Total energy + Delta-G solvation = -4080.302611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -50.06003 -41.36304 -40.15161 -38.82495 -37.53594 -36.58957 -34.32380 -33.85137 -32.24174 -31.45836 -30.45077 -29.09015 -26.97997 -24.47574 -23.92332 -23.84710 -22.94239 -21.51344 -20.31918 -19.65480 -18.81556 -18.32431 -18.00421 -17.48707 -16.89038 -16.72630 -16.59234 -16.19192 -15.86065 -15.75010 -15.39413 -14.92943 -14.90326 -14.62899 -14.48785 -14.27533 -14.12874 -14.02849 -13.73689 -13.41436 -13.28468 -13.03659 -12.81583 -12.71863 -12.49059 -12.40855 -12.14274 -12.07431 -11.93830 -11.85229 -11.76051 -11.63239 -11.12446 -10.97125 -9.90832 -9.76371 -9.73186 -9.30297 -8.01967 -5.36372 -0.07465 -0.02114 0.96312 1.38458 1.43787 1.50217 1.51075 1.86122 2.41959 2.49897 3.16919 3.25638 3.30299 3.33949 3.59022 3.62415 3.65122 3.85287 3.86586 4.10280 4.18823 4.26435 4.29543 4.32497 4.36560 4.46599 4.50116 4.60696 4.76215 4.79715 4.83065 4.97613 4.99826 5.04286 5.06493 5.16613 5.18937 5.20813 5.37515 5.68149 5.75781 6.21269 6.42155 7.01703 7.08376 7.82809 8.04159 9.19553 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002300 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.220036 B =12170.080820 C =12701.669404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.958 3.042 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.241 1.241 7 C -0.236 4.236 8 H 0.053 0.947 9 N -0.753 5.753 10 C 0.167 3.833 11 C -0.100 4.100 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.099 3.901 15 N -0.617 5.617 16 C 0.531 3.469 17 O -0.576 6.576 18 C -0.099 4.099 19 C -0.112 4.112 20 C 0.099 3.901 21 F -0.141 7.141 22 C -0.149 4.149 23 C -0.069 4.069 24 C -0.121 4.121 25 C -0.014 4.014 26 Cl -0.059 7.059 27 C 0.119 3.881 28 H 0.258 0.742 29 H 0.369 0.631 30 H 0.022 0.978 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.162 0.838 41 H 0.068 0.932 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.618 -7.873 3.743 36.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.165 1.165 7 C -0.367 4.367 8 H 0.071 0.929 9 N -0.399 5.399 10 C 0.041 3.959 11 C -0.119 4.119 12 H 0.106 0.894 13 C -0.160 4.160 14 C -0.022 4.022 15 N -0.350 5.350 16 C 0.321 3.679 17 O -0.455 6.455 18 C -0.138 4.138 19 C -0.114 4.114 20 C 0.080 3.920 21 F -0.120 7.120 22 C -0.167 4.167 23 C -0.087 4.087 24 C -0.140 4.140 25 C -0.041 4.041 26 Cl -0.030 7.030 27 C -0.005 4.005 28 H 0.067 0.933 29 H 0.202 0.798 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.182 0.818 39 H 0.198 0.802 40 H 0.180 0.820 41 H 0.086 0.914 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 35.453 -8.421 3.338 36.592 hybrid contribution -0.876 1.026 -0.017 1.349 sum 34.577 -7.396 3.321 35.515 Atomic orbital electron populations 1.69900 1.07325 1.26775 1.59596 1.25587 0.96184 1.01584 1.02498 0.85363 0.79020 0.79068 0.78077 1.20692 1.22382 1.16500 1.19015 0.82765 0.93430 1.41511 0.92878 1.42578 1.02320 1.04024 1.90993 1.20611 0.89273 0.87619 0.98437 1.22406 0.93678 0.96257 0.99574 0.89449 1.22672 0.94390 1.01905 0.97007 1.22307 0.97411 0.86366 0.96157 1.48554 1.07906 1.29278 1.49283 1.20421 0.84028 0.82624 0.80861 1.90697 1.85956 1.27639 1.41254 1.20634 0.88843 1.00691 1.03607 1.19232 0.98354 0.97532 0.96268 1.17614 0.92960 0.95910 0.85543 1.91489 1.75438 1.93603 1.51463 1.21600 0.94684 1.00449 1.00016 1.21419 0.99217 0.96022 0.92042 1.21479 0.96355 0.94373 1.01760 1.20739 0.97977 0.92474 0.92869 1.98385 1.94714 1.41499 1.68438 1.22070 0.82890 0.96695 0.98797 0.93338 0.79774 0.95956 0.95246 0.90379 0.89199 0.89064 0.88952 0.85493 0.85737 0.81845 0.80199 0.82021 0.91380 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.27 13.97 21.65 0.30 -62.96 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.96 44.27 27.74 68.60 1.90 46.17 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.24 -9.59 6.52 99.48 0.65 -8.94 16 7 C -0.24 -13.42 10.47 84.04 0.88 -12.54 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 9 N -0.75 -34.03 5.26 -343.45 -1.81 -35.83 16 10 C 0.17 6.12 5.71 86.38 0.49 6.61 16 11 C -0.10 -2.73 3.10 -9.40 -0.03 -2.76 16 12 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.12 -2.75 6.13 31.79 0.19 -2.55 16 14 C 0.10 1.74 6.49 86.73 0.56 2.31 16 15 N -0.62 -14.65 3.33 -811.79 -2.70 -17.35 16 16 C 0.53 13.72 7.84 87.66 0.69 14.41 16 17 O -0.58 -19.50 16.29 -3.04 -0.05 -19.55 16 18 C -0.10 -1.84 4.45 29.10 0.13 -1.71 16 19 C -0.11 -2.21 4.38 -19.80 -0.09 -2.30 16 20 C 0.10 1.89 7.24 22.37 0.16 2.06 16 21 F -0.14 -3.03 16.47 44.97 0.74 -2.29 16 22 C -0.15 -1.93 10.03 22.32 0.22 -1.71 16 23 C -0.07 -0.65 10.04 22.26 0.22 -0.43 16 24 C -0.12 -1.51 9.83 22.30 0.22 -1.29 16 25 C -0.01 -0.24 6.31 22.32 0.14 -0.10 16 26 Cl -0.06 -1.07 27.30 -2.72 -0.07 -1.15 16 27 C 0.12 3.17 6.37 86.86 0.55 3.72 16 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.37 15.46 5.40 -92.71 -0.50 14.96 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.03 1.10 8.11 -2.39 -0.02 1.08 16 32 H 0.08 1.87 8.01 -2.39 -0.02 1.85 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.13 1.92 6.90 -2.39 -0.02 1.91 16 37 H 0.12 1.88 7.63 -2.38 -0.02 1.86 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.07 1.97 8.04 -2.39 -0.02 1.95 16 42 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -76.46 368.36 3.63 -72.83 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.49 Total: 19.88 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 4.82 Total: 0.24 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -4.20 Total: -116.14 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.74 Total: -2.29 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.07 Total: -1.15 kcal Total: -76.46 3.63 -72.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567149984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.424 kcal (2) G-P(sol) polarization free energy of solvation -76.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds