Wall clock time and date at job start Sat Apr 11 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 C 1.53001 * 109.47357 * 181.33347 * 14 12 11 16 16 N 1.46494 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99883 * 179.97438 * 16 15 14 18 18 O 1.21577 * 119.99865 * 359.97438 * 17 16 15 19 19 C 1.47612 * 120.00053 * 180.02562 * 17 16 15 20 20 C 1.39892 * 120.17635 * 270.00006 * 19 17 16 21 21 F 1.35092 * 120.10395 * 359.97438 * 20 19 17 22 22 C 1.38245 * 119.78993 * 180.02562 * 20 19 17 23 23 C 1.38285 * 120.15848 * 359.97438 * 22 20 19 24 24 C 1.38346 * 120.36287 * 0.02562 * 23 22 20 25 25 C 1.38081 * 120.20066 * 359.71878 * 24 23 22 26 26 Cl 1.73605 * 120.07849 * 180.27997 * 25 24 23 27 27 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 28 28 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 30 30 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 31 31 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 32 32 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 33 33 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 34 34 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 35 35 H 1.09003 * 109.46648 * 299.99860 * 15 14 12 36 36 H 1.09000 * 109.47215 * 59.98952 * 15 14 12 37 37 H 0.97001 * 120.00138 * 359.97438 * 16 15 14 38 38 H 1.08002 * 119.91467 * 179.97438 * 22 20 19 39 39 H 1.07996 * 119.81841 * 180.02562 * 23 22 20 40 40 H 1.07995 * 119.89862 * 179.97438 * 24 23 22 41 41 H 1.09002 * 110.36696 * 85.26297 * 27 9 7 42 42 H 1.08995 * 110.36608 * 323.05133 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 6 2.3499 -6.6563 -0.7156 16 7 2.5305 -8.0395 -0.2681 17 6 3.6207 -8.7342 -0.6493 18 8 4.4539 -8.2131 -1.3650 19 6 3.8023 -10.1282 -0.1989 20 6 4.4816 -10.3989 0.9937 21 9 4.9746 -9.3849 1.7379 22 6 4.6477 -11.7074 1.4077 23 6 4.1439 -12.7462 0.6465 24 6 3.4711 -12.4858 -0.5339 25 6 3.2921 -11.1842 -0.9589 26 17 2.4410 -10.8608 -2.4370 27 6 1.9335 -3.7312 -0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5607 -2.0564 -0.8839 30 1 -0.5599 -2.0893 0.9002 31 1 -1.2974 -4.2573 -0.6785 32 1 -0.6320 -4.4259 0.9776 33 1 1.0793 -6.1306 0.9428 34 1 0.2074 -6.7095 -0.4969 35 1 2.3127 -6.6282 -1.8046 36 1 3.1846 -6.0493 -0.3649 37 1 1.8654 -8.4553 0.3027 38 1 5.1721 -11.9187 2.3279 39 1 4.2764 -13.7663 0.9754 40 1 3.0811 -13.3028 -1.1228 41 1 2.1668 -4.0420 1.0178 42 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567713006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:50 Heat of formation + Delta-G solvation = -65.572966 kcal Electronic energy + Delta-G solvation = -26262.328819 eV Core-core repulsion = 22182.105774 eV Total energy + Delta-G solvation = -4080.223045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.18816 -41.25949 -39.72148 -39.27923 -37.62698 -36.55534 -34.80269 -33.01534 -32.06487 -31.60622 -30.66746 -28.23187 -26.70260 -25.17162 -23.94769 -23.55921 -22.04242 -21.81025 -20.92584 -19.33560 -18.88327 -18.43375 -17.98187 -17.41496 -16.97567 -16.70625 -16.58609 -16.27376 -16.06280 -15.83694 -15.58531 -15.02544 -14.93608 -14.57394 -14.34936 -14.10796 -13.87110 -13.68868 -13.36010 -13.23503 -13.11717 -12.81428 -12.74593 -12.67764 -12.50298 -12.27781 -12.22091 -12.06350 -11.80697 -11.66084 -11.42691 -11.34703 -11.17044 -10.71649 -10.26488 -10.18293 -9.89123 -8.90228 -7.86694 -5.21882 -0.33490 -0.13999 0.83310 1.26350 1.42759 1.46619 1.52889 1.94022 2.26771 2.48147 2.98268 3.30794 3.39860 3.63020 3.71973 3.77306 3.78966 3.95040 4.10161 4.12581 4.24505 4.31086 4.32586 4.57833 4.61342 4.67015 4.73057 4.84117 4.87104 4.95806 4.99634 5.08322 5.11436 5.13653 5.22355 5.27705 5.42722 5.50057 5.55883 5.69324 5.77929 6.19446 6.29718 6.96785 7.09505 7.77224 8.42195 9.23714 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.002159 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.108905 B =12967.711681 C =13533.067679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.631 5.631 10 C 0.181 3.819 11 C -0.121 4.121 12 C -0.085 4.085 13 H 0.073 0.927 14 C -0.098 4.098 15 C 0.122 3.878 16 N -0.700 5.700 17 C 0.560 3.440 18 O -0.568 6.568 19 C -0.178 4.178 20 C 0.120 3.880 21 F -0.141 7.141 22 C -0.140 4.140 23 C -0.043 4.043 24 C -0.112 4.112 25 C 0.006 3.994 26 Cl -0.054 7.054 27 C 0.133 3.867 28 H 0.247 0.753 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.416 0.584 38 H 0.175 0.825 39 H 0.194 0.806 40 H 0.175 0.825 41 H 0.023 0.977 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 -34.943 2.466 35.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.105 4.105 13 H 0.092 0.908 14 C -0.136 4.136 15 C -0.001 4.001 16 N -0.351 5.351 17 C 0.345 3.655 18 O -0.447 6.447 19 C -0.182 4.182 20 C 0.100 3.900 21 F -0.119 7.119 22 C -0.158 4.158 23 C -0.060 4.060 24 C -0.130 4.130 25 C -0.022 4.022 26 Cl -0.024 7.024 27 C 0.008 3.992 28 H 0.056 0.944 29 H 0.026 0.974 30 H 0.023 0.977 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.193 0.807 39 H 0.211 0.789 40 H 0.193 0.807 41 H 0.041 0.959 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.053 -34.244 1.852 34.532 hybrid contribution 0.178 1.973 0.070 1.982 sum 4.231 -32.271 1.922 32.603 Atomic orbital electron populations 1.70184 1.06228 1.25347 1.58259 1.25673 0.96706 1.01051 1.02646 0.85143 0.77174 0.78756 0.78219 1.20385 1.21702 1.20299 1.19422 0.90886 0.84056 1.43138 0.90470 1.44894 1.02717 1.01168 1.87012 1.20990 0.83471 0.92529 0.97449 1.22755 0.97293 0.94481 1.01408 1.22144 0.95014 0.93540 0.99779 0.90845 1.21588 0.96238 0.94059 1.01718 1.21386 0.98646 0.80608 0.99495 1.45886 1.23262 1.14257 1.51733 1.18284 0.81699 0.85750 0.79760 1.90820 1.44315 1.71053 1.38493 1.19734 1.07186 0.93448 0.97876 1.17860 0.96994 0.86291 0.88834 1.91546 1.85361 1.59787 1.75209 1.21649 1.02020 0.88825 1.03336 1.21685 0.91827 1.01270 0.91243 1.21547 0.99511 0.93883 0.98097 1.20893 0.97939 0.94065 0.89304 1.98429 1.75206 1.95980 1.32829 1.21817 0.95386 0.84888 0.97117 0.94361 0.97383 0.97711 0.89805 0.90490 0.90060 0.88271 0.91849 0.92932 0.74655 0.80709 0.78870 0.80725 0.95924 0.95099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 10.33 21.65 0.22 -59.06 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 3 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.25 -14.59 10.28 84.03 0.86 -13.72 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -34.20 3.40 -691.30 -2.35 -36.56 16 10 C 0.18 9.19 5.38 86.68 0.47 9.66 16 11 C -0.12 -4.28 6.42 31.78 0.20 -4.08 16 12 C -0.08 -2.78 3.07 -9.40 -0.03 -2.80 16 13 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 14 C -0.10 -2.25 4.85 30.59 0.15 -2.10 16 15 C 0.12 3.16 5.52 86.38 0.48 3.64 16 16 N -0.70 -15.83 5.55 -466.20 -2.59 -18.42 16 17 C 0.56 15.34 5.95 86.72 0.52 15.86 16 18 O -0.57 -20.93 17.11 -3.96 -0.07 -21.00 16 19 C -0.18 -3.65 5.64 -20.04 -0.11 -3.77 16 20 C 0.12 2.13 7.29 22.67 0.17 2.29 16 21 F -0.14 -3.22 16.83 44.97 0.76 -2.46 16 22 C -0.14 -1.17 10.01 22.28 0.22 -0.95 16 23 C -0.04 -0.15 10.03 22.31 0.22 0.07 16 24 C -0.11 -0.82 9.81 22.26 0.22 -0.61 16 25 C 0.01 0.09 6.35 22.60 0.14 0.23 16 26 Cl -0.05 -0.96 28.04 -2.72 -0.08 -1.04 16 27 C 0.13 5.65 5.89 86.86 0.51 6.16 16 28 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.01 0.45 7.39 -2.38 -0.02 0.43 16 30 H 0.00 0.27 7.51 -2.39 -0.02 0.25 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 33 H 0.08 1.75 8.10 -2.38 -0.02 1.73 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.62 7.45 -2.39 -0.02 1.61 16 37 H 0.42 6.69 8.46 -92.71 -0.78 5.91 16 38 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 39 H 0.19 -0.97 8.06 -2.91 -0.02 -0.99 16 40 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 42 H 0.03 1.33 8.06 -2.39 -0.02 1.31 16 Total: -1.00 -81.80 370.03 2.67 -79.13 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 0.26 Total: 3.36 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 4.49 Total: 6.31 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -4.72 Total: -114.04 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.07 Total: -21.00 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.76 Total: -2.46 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -81.80 2.67 -79.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567713006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.559 kcal (2) G-P(sol) polarization free energy of solvation -81.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds