Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 C 1.52997 * 114.17330 * 139.67127 * 15 14 13 17 17 N 1.46506 * 109.47257 * 91.15867 * 16 15 14 18 18 C 1.34774 * 119.99990 * 180.02562 * 17 16 15 19 19 O 1.21698 * 120.00335 * 359.97438 * 18 17 16 20 20 C 1.46670 * 120.00144 * 180.02562 * 18 17 16 21 21 C 1.37885 * 126.22812 * 179.68630 * 20 18 17 22 22 C 1.39881 * 107.10110 * 179.88120 * 21 20 18 23 23 Cl 1.73602 * 126.07925 * 180.14807 * 22 21 20 24 24 C 1.35526 * 107.84749 * 0.38745 * 22 21 20 25 25 N 1.35628 * 108.84961 * 359.75597 * 24 22 21 26 26 H 0.97001 * 125.67157 * 180.02562 * 25 24 22 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 1.08996 * 109.47675 * 211.16095 * 16 15 14 36 36 H 1.09002 * 109.47041 * 331.16398 * 16 15 14 37 37 H 0.96997 * 119.99763 * 0.02562 * 17 16 15 38 38 H 1.08001 * 126.45126 * 0.02562 * 21 20 18 39 39 H 1.07999 * 125.57305 * 179.78451 * 24 22 21 40 40 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 41 41 H 1.08997 * 113.47905 * 23.93586 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 6 1.6862 -8.8630 -1.7726 17 7 2.6548 -9.4769 -2.6843 18 6 2.2436 -10.3813 -3.5951 19 8 1.0678 -10.6883 -3.6599 20 6 3.2134 -10.9963 -4.5074 21 6 2.9367 -11.9350 -5.4788 22 6 4.1462 -12.2412 -6.1113 23 17 4.3617 -13.3671 -7.4150 24 6 5.1207 -11.5065 -5.5221 25 7 4.5662 -10.7457 -4.5457 26 1 5.0437 -10.1277 -3.9704 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 1.2072 -9.6388 -1.1753 36 1 0.9305 -8.3306 -2.3502 37 1 3.5920 -9.2325 -2.6324 38 1 1.9681 -12.3533 -5.7095 39 1 6.1675 -11.5236 -5.7871 40 1 1.6894 -7.6711 1.2299 41 1 0.4553 -7.2469 -0.0325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567823069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = 8.459971 kcal Electronic energy + Delta-G solvation = -25392.410239 eV Core-core repulsion = 21335.317464 eV Total energy + Delta-G solvation = -4057.092775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.87019 -40.47216 -39.28355 -37.79424 -36.78052 -35.20481 -33.91124 -31.70093 -31.35226 -31.02560 -29.79139 -27.43556 -25.97393 -25.01769 -23.48411 -22.44563 -21.12894 -20.76251 -20.19982 -19.40188 -18.94708 -17.88183 -16.56461 -16.42441 -16.20216 -15.90816 -15.34142 -15.09985 -15.09302 -14.83627 -14.54981 -14.32882 -14.04307 -13.76725 -13.67379 -13.36540 -13.35083 -12.99556 -12.62309 -12.33215 -12.23390 -11.69209 -11.57944 -11.43476 -11.24486 -11.11367 -10.84166 -10.65553 -10.44246 -10.40665 -10.22923 -9.55848 -9.51757 -9.36643 -8.86712 -8.76187 -8.24036 -7.97808 -6.43122 -3.84035 0.90357 1.74904 1.97050 2.52465 2.80241 2.92685 3.16161 3.24837 3.30634 3.86525 3.91251 4.14426 4.20838 4.35921 4.44060 4.52104 4.69311 4.87942 4.94975 5.07428 5.16288 5.24744 5.30907 5.39803 5.40837 5.43368 5.60121 5.62793 5.68726 5.83163 5.87556 5.92244 6.07548 6.13712 6.23913 6.47002 6.65291 7.02658 7.10822 7.53519 7.73300 8.04358 8.60463 9.16856 9.53034 10.05254 10.74691 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.001612 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.100738 B =17368.553248 C =18036.549356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.577 6.577 12 C 0.008 3.992 13 N -0.440 5.440 14 C 0.009 3.991 15 C -0.133 4.133 16 C 0.132 3.868 17 N -0.726 5.726 18 C 0.589 3.411 19 O -0.524 6.524 20 C -0.040 4.040 21 C -0.093 4.093 22 C -0.128 4.128 23 Cl -0.046 7.046 24 C 0.044 3.956 25 N -0.530 5.530 26 H 0.425 0.575 27 C 0.005 3.995 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.396 0.604 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.089 0.911 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 -24.836 -9.062 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.460 6.460 12 C -0.124 4.124 13 N -0.161 5.161 14 C -0.120 4.120 15 C -0.152 4.152 16 C 0.008 3.992 17 N -0.377 5.377 18 C 0.375 3.625 19 O -0.399 6.399 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.161 4.161 23 Cl -0.018 7.018 24 C -0.094 4.094 25 N -0.127 5.127 26 H 0.264 0.736 27 C -0.124 4.124 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.230 0.770 38 H 0.176 0.824 39 H 0.199 0.801 40 H 0.107 0.893 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.653 -24.574 -8.615 26.877 hybrid contribution -0.219 1.115 -0.361 1.192 sum 6.433 -23.459 -8.976 25.928 Atomic orbital electron populations 1.69611 1.05925 1.28143 1.50680 1.25258 0.95640 0.99697 0.97367 0.85857 0.79241 0.80829 0.78361 1.20442 1.20899 1.19430 1.19692 0.93341 0.82238 1.47612 0.87975 1.41873 1.09150 1.04596 1.64723 1.19656 0.88376 0.84382 0.84491 1.90517 1.13671 1.86982 1.54846 1.22515 0.94672 0.93071 1.02134 1.68818 1.30780 1.00129 1.16398 1.23971 1.03201 0.92483 0.92370 1.23032 1.00681 0.94452 0.97051 1.21447 0.91150 0.95750 0.90835 1.45865 1.12017 1.43473 1.36346 1.16936 0.87109 0.78902 0.79506 1.90882 1.16511 1.62121 1.70404 1.20377 0.83105 1.06731 1.05113 1.21195 0.98369 0.97475 0.94951 1.19980 0.94822 1.02428 0.98875 1.98341 1.97291 1.59600 1.46562 1.21789 0.99111 0.95984 0.92534 1.41931 1.07236 1.34476 1.29084 0.73632 1.23834 0.97170 0.91767 0.99671 0.91881 0.77539 0.89299 0.92199 0.91217 0.89468 0.87360 0.90566 0.90732 0.76993 0.82424 0.80073 0.89275 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 9 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 10 C 0.45 10.53 7.85 -10.98 -0.09 10.44 16 11 O -0.58 -15.77 16.01 5.54 0.09 -15.68 16 12 C 0.01 0.14 5.30 -4.98 -0.03 0.11 16 13 N -0.44 -6.81 5.82 -246.11 -1.43 -8.24 16 14 C 0.01 0.11 7.28 -7.56 -0.06 0.06 16 15 C -0.13 -1.20 4.09 -90.10 -0.37 -1.57 16 16 C 0.13 1.11 5.58 -4.04 -0.02 1.09 16 17 N -0.73 -5.48 5.55 -61.62 -0.34 -5.82 16 18 C 0.59 5.90 7.79 -12.86 -0.10 5.80 16 19 O -0.52 -7.26 16.88 5.19 0.09 -7.17 16 20 C -0.04 -0.33 7.05 -81.99 -0.58 -0.91 16 21 C -0.09 -0.84 10.64 -39.10 -0.42 -1.26 16 22 C -0.13 -0.98 6.66 -39.94 -0.27 -1.25 16 23 Cl -0.05 -0.35 29.30 -51.86 -1.52 -1.87 16 24 C 0.04 0.23 11.87 -16.84 -0.20 0.03 16 25 N -0.53 -2.66 6.00 -9.35 -0.06 -2.71 16 26 H 0.42 0.82 8.19 -40.82 -0.33 0.49 16 27 C 0.01 0.06 7.26 -7.55 -0.05 0.00 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 30 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 31 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 32 H 0.07 0.86 7.15 -51.93 -0.37 0.49 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.72 7.81 -51.93 -0.41 0.31 16 37 H 0.40 1.92 7.60 -40.82 -0.31 1.61 16 38 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -35.57 371.38 -9.35 -44.92 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.00 Total: 8.63 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.41 Total: 4.54 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -1.16 Total: -54.95 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.18 Total: -22.84 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.57 -9.35 -44.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567823069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.377 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds