Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 C 1.52997 * 114.17330 * 139.67127 * 15 14 13 17 17 N 1.46506 * 109.47257 * 91.15867 * 16 15 14 18 18 C 1.34774 * 119.99990 * 180.02562 * 17 16 15 19 19 O 1.21698 * 120.00335 * 359.97438 * 18 17 16 20 20 C 1.46670 * 120.00144 * 180.02562 * 18 17 16 21 21 C 1.37885 * 126.22812 * 179.68630 * 20 18 17 22 22 C 1.39881 * 107.10110 * 179.88120 * 21 20 18 23 23 Cl 1.73602 * 126.07925 * 180.14807 * 22 21 20 24 24 C 1.35526 * 107.84749 * 0.38745 * 22 21 20 25 25 N 1.35628 * 108.84961 * 359.75597 * 24 22 21 26 26 H 0.97001 * 125.67157 * 180.02562 * 25 24 22 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 1.08996 * 109.47675 * 211.16095 * 16 15 14 36 36 H 1.09002 * 109.47041 * 331.16398 * 16 15 14 37 37 H 0.96997 * 119.99763 * 0.02562 * 17 16 15 38 38 H 1.08001 * 126.45126 * 0.02562 * 21 20 18 39 39 H 1.07999 * 125.57305 * 179.78451 * 24 22 21 40 40 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 41 41 H 1.08997 * 113.47905 * 23.93586 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 6 1.6862 -8.8630 -1.7726 17 7 2.6548 -9.4769 -2.6843 18 6 2.2436 -10.3813 -3.5951 19 8 1.0678 -10.6883 -3.6599 20 6 3.2134 -10.9963 -4.5074 21 6 2.9367 -11.9350 -5.4788 22 6 4.1462 -12.2412 -6.1113 23 17 4.3617 -13.3671 -7.4150 24 6 5.1207 -11.5065 -5.5221 25 7 4.5662 -10.7457 -4.5457 26 1 5.0437 -10.1277 -3.9704 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 1.2072 -9.6388 -1.1753 36 1 0.9305 -8.3306 -2.3502 37 1 3.5920 -9.2325 -2.6324 38 1 1.9681 -12.3533 -5.7095 39 1 6.1675 -11.5236 -5.7871 40 1 1.6894 -7.6711 1.2299 41 1 0.4553 -7.2469 -0.0325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567823069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -20.599839 kcal Electronic energy + Delta-G solvation = -25393.670367 eV Core-core repulsion = 21335.317464 eV Total energy + Delta-G solvation = -4058.352903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.43294 -41.48537 -40.16304 -39.55448 -37.33557 -36.10817 -35.85319 -33.33114 -32.46260 -31.90440 -30.54551 -28.54874 -26.92662 -26.70309 -24.51945 -23.32283 -21.70142 -21.41871 -21.04698 -20.92855 -19.97861 -19.70793 -17.81424 -17.36592 -17.09886 -16.76251 -16.57183 -16.50629 -16.15752 -15.93106 -15.54197 -15.35263 -15.23313 -14.87255 -14.63197 -14.36111 -14.28923 -13.90851 -13.70671 -13.60415 -13.51368 -12.98629 -12.80182 -12.71009 -12.45292 -12.39029 -12.13942 -11.93404 -11.81748 -11.56481 -11.50313 -11.28426 -10.39478 -10.29228 -10.02197 -9.94107 -9.73425 -9.29870 -8.47694 -5.96635 0.28896 1.23135 1.36858 1.40508 1.42028 1.53340 1.89824 2.04834 2.21300 2.26158 2.28231 2.82385 3.18262 3.28332 3.44020 3.69850 3.77365 4.06783 4.13447 4.15512 4.18672 4.25447 4.34909 4.46868 4.51510 4.52881 4.62044 4.71538 4.80024 4.85546 4.86171 5.12289 5.31626 5.33320 5.38086 5.40454 5.52404 5.89761 6.08407 6.26488 6.44832 6.59631 7.03389 7.12025 7.55681 8.11917 8.69697 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.001612 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.100738 B =17368.553248 C =18036.549356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.619 6.619 12 C 0.022 3.978 13 N -0.477 5.477 14 C 0.002 3.998 15 C -0.101 4.101 16 C 0.137 3.863 17 N -0.712 5.712 18 C 0.589 3.411 19 O -0.570 6.570 20 C -0.055 4.055 21 C -0.112 4.112 22 C -0.151 4.151 23 Cl -0.050 7.050 24 C 0.069 3.931 25 N -0.512 5.512 26 H 0.441 0.559 27 C 0.009 3.991 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.411 0.589 38 H 0.145 0.855 39 H 0.219 0.781 40 H 0.101 0.899 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 -25.296 -8.957 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.505 6.505 12 C -0.110 4.110 13 N -0.199 5.199 14 C -0.127 4.127 15 C -0.120 4.120 16 C 0.014 3.986 17 N -0.364 5.364 18 C 0.377 3.623 19 O -0.449 6.449 20 C -0.169 4.169 21 C -0.139 4.139 22 C -0.184 4.184 23 Cl -0.022 7.022 24 C -0.070 4.070 25 N -0.111 5.111 26 H 0.283 0.717 27 C -0.120 4.120 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.163 0.837 39 H 0.236 0.764 40 H 0.119 0.881 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.597 -25.022 -8.484 27.492 hybrid contribution -0.457 1.205 -0.411 1.353 sum 7.141 -23.817 -8.895 26.408 Atomic orbital electron populations 1.69672 1.06819 1.29279 1.50384 1.26039 0.96556 1.02398 0.96299 0.84927 0.77883 0.76880 0.78647 1.19625 1.19498 1.19799 1.19656 0.92664 0.84089 1.49996 0.90421 1.41962 1.09278 1.04755 1.65407 1.20818 0.88287 0.85937 0.82087 1.90477 1.15864 1.87949 1.56196 1.22384 0.94436 0.90250 1.03945 1.68776 1.31600 1.01257 1.18252 1.24045 1.02441 0.94815 0.91433 1.22821 1.01005 0.92415 0.95806 1.21338 0.91010 0.95586 0.90702 1.45720 1.12753 1.42479 1.35407 1.17122 0.86725 0.78781 0.79650 1.90855 1.18450 1.63810 1.71818 1.20047 0.84266 1.07311 1.05239 1.21262 0.98653 0.98155 0.95827 1.20104 0.95048 1.03608 0.99634 1.98335 1.97240 1.59851 1.46767 1.22342 1.00117 0.93752 0.90778 1.41897 1.06008 1.34216 1.28936 0.71662 1.23934 0.98088 0.89117 1.00899 0.91313 0.77066 0.87454 0.90153 0.90970 0.91018 0.85874 0.89993 0.91665 0.75230 0.83744 0.76438 0.88109 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.58 -29.70 5.29 -306.98 -1.62 -31.32 16 10 C 0.44 21.08 7.85 87.66 0.69 21.77 16 11 O -0.62 -34.65 16.01 -3.08 -0.05 -34.69 16 12 C 0.02 0.72 5.30 85.56 0.45 1.17 16 13 N -0.48 -14.10 5.82 -932.57 -5.43 -19.53 16 14 C 0.00 0.04 7.28 83.57 0.61 0.65 16 15 C -0.10 -1.59 4.09 -10.45 -0.04 -1.63 16 16 C 0.14 2.05 5.58 86.38 0.48 2.53 16 17 N -0.71 -9.49 5.55 -467.08 -2.59 -12.08 16 18 C 0.59 11.41 7.79 86.45 0.67 12.08 16 19 O -0.57 -16.00 16.88 -4.34 -0.07 -16.07 16 20 C -0.06 -0.86 7.05 40.35 0.28 -0.58 16 21 C -0.11 -2.01 10.64 22.58 0.24 -1.77 16 22 C -0.15 -2.16 6.66 22.04 0.15 -2.01 16 23 Cl -0.05 -0.73 29.30 -2.72 -0.08 -0.81 16 24 C 0.07 0.55 11.87 83.48 0.99 1.54 16 25 N -0.51 -3.87 6.00 -183.51 -1.10 -4.97 16 26 H 0.44 0.30 8.19 -92.71 -0.76 -0.45 16 27 C 0.01 0.16 7.26 83.57 0.61 0.77 16 28 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.40 19.31 7.90 -92.71 -0.73 18.57 16 30 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16 31 H 0.08 2.34 7.30 -2.39 -0.02 2.32 16 32 H 0.07 1.69 7.15 -2.39 -0.02 1.67 16 33 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.15 7.81 -2.39 -0.02 1.13 16 37 H 0.41 2.95 7.60 -92.71 -0.70 2.25 16 38 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.22 0.06 8.06 -2.91 -0.02 0.04 16 40 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.09 1.41 7.87 -2.39 -0.02 1.39 16 Total: -1.00 -79.53 371.38 -3.31 -82.84 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -1.08 Total: 25.13 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.41 Total: 15.99 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -10.46 Total: -117.31 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.12 Total: -50.77 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -79.53 -3.31 -82.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567823069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.241 kcal (2) G-P(sol) polarization free energy of solvation -79.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds