Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.01604 * 53.61530 * 11 10 9 13 13 C 1.54259 * 110.03578 * 292.17092 * 11 10 9 14 14 C 1.54888 * 104.19544 * 217.10740 * 13 11 10 15 15 C 1.54888 * 102.74928 * 37.94077 * 14 13 11 16 16 C 1.53874 * 110.03179 * 175.00163 * 11 10 9 17 17 H 1.09005 * 110.03346 * 238.57542 * 16 11 10 18 18 N 1.46505 * 110.03223 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00284 * 204.99689 * 18 16 11 20 20 O 1.21571 * 119.99872 * 0.02562 * 19 18 16 21 21 C 1.47720 * 120.00345 * 180.02562 * 19 18 16 22 22 C 1.39662 * 120.11273 * 359.72847 * 21 19 18 23 23 C 1.37837 * 119.90434 * 179.74018 * 22 21 19 24 24 C 1.38641 * 120.13340 * 0.51599 * 23 22 21 25 25 F 1.35097 * 119.88735 * 179.74221 * 24 23 22 26 26 C 1.38745 * 120.22841 * 359.75721 * 24 23 22 27 27 Cl 1.73593 * 119.95274 * 180.02562 * 26 24 23 28 28 C 1.37969 * 120.09140 * 359.97438 * 26 24 23 29 29 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 32 32 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 33 33 H 1.09003 * 110.48546 * 335.78245 * 13 11 10 34 34 H 1.08999 * 110.48909 * 98.42560 * 13 11 10 35 35 H 1.08998 * 110.75677 * 279.62374 * 14 13 11 36 36 H 1.09001 * 110.75711 * 156.25553 * 14 13 11 37 37 H 1.09002 * 110.48146 * 203.37818 * 15 14 13 38 38 H 1.08999 * 110.59917 * 80.79403 * 15 14 13 39 39 H 0.96998 * 119.99873 * 25.00760 * 18 16 11 40 40 H 1.07998 * 120.04698 * 359.97438 * 22 21 19 41 41 H 1.07998 * 119.93275 * 180.25181 * 23 22 21 42 42 H 1.07998 * 120.06006 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3588 -4.7083 -0.8245 13 6 0.3065 -4.8663 1.3422 14 6 0.1442 -6.3787 1.6344 15 6 1.4893 -6.9682 1.1423 16 6 1.8160 -6.1561 -0.1279 17 1 1.4752 -6.6937 -1.0128 18 7 3.2585 -5.9142 -0.2123 19 6 4.0591 -6.8166 -0.8132 20 8 3.5843 -7.8311 -1.2856 21 6 5.5136 -6.5730 -0.8978 22 6 6.0610 -5.4056 -0.3609 23 6 7.4194 -5.1852 -0.4375 24 6 8.2416 -6.1147 -1.0557 25 9 9.5717 -5.8911 -1.1325 26 6 7.7031 -7.2736 -1.5959 27 17 8.7392 -8.4329 -2.3678 28 6 6.3453 -7.5064 -1.5197 29 1 -0.4850 -0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6843 -3.7140 -0.8921 32 1 2.6855 -3.7148 0.8878 33 1 0.8915 -4.3868 2.1270 34 1 -0.6690 -4.3894 1.2467 35 1 -0.6897 -6.7942 1.0686 36 1 0.0133 -6.5540 2.7022 37 1 1.3769 -8.0252 0.9010 38 1 2.2665 -6.8300 1.8939 39 1 3.6373 -5.1047 0.1645 40 1 5.4212 -4.6785 0.1170 41 1 7.8437 -4.2846 -0.0188 42 1 5.9267 -8.4088 -1.9400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568536590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -53.458142 kcal Electronic energy + Delta-G solvation = -26785.717679 eV Core-core repulsion = 22706.019972 eV Total energy + Delta-G solvation = -4079.697707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.41638 -40.68716 -39.17353 -37.88132 -36.89629 -34.75254 -33.91822 -31.54722 -31.48531 -31.13781 -28.47297 -27.62302 -24.47920 -24.10639 -23.51314 -22.75754 -21.11842 -20.58651 -19.28005 -18.66269 -17.88853 -17.35481 -16.98060 -16.21749 -16.11610 -15.78851 -15.31725 -15.06100 -14.71083 -14.47560 -14.36975 -13.96049 -13.83695 -13.71327 -13.47029 -13.34744 -13.26303 -13.05592 -12.35969 -11.97493 -11.89224 -11.76473 -11.40270 -11.35116 -10.96672 -10.84451 -10.66977 -10.63581 -10.52584 -10.38254 -10.13655 -10.03469 -9.53062 -9.27760 -9.23438 -9.05999 -8.93347 -7.09876 -6.17899 -3.18608 0.15319 0.56702 1.53841 2.37586 2.98626 3.30287 3.46305 3.49502 3.54344 3.67212 4.13287 4.30610 4.48763 4.53102 4.62919 4.65407 4.68158 4.96015 5.01596 5.27655 5.30578 5.39949 5.45257 5.48851 5.53956 5.56237 5.61623 5.66705 5.71720 5.76665 5.91583 5.97136 6.01256 6.09768 6.14439 6.27221 6.40512 6.43925 6.53257 6.63404 7.36605 7.70112 8.03152 8.68250 9.14210 10.00613 10.15254 11.30504 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.003096 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.894936 B = 9042.100020 C =11437.170134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.079 2.921 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.336 4.336 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.110 4.110 12 H 0.082 0.918 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.093 0.907 18 N -0.713 5.713 19 C 0.560 3.440 20 O -0.537 6.537 21 C -0.131 4.131 22 C -0.050 4.050 23 C -0.145 4.145 24 C 0.133 3.867 25 F -0.122 7.122 26 C -0.085 4.085 27 Cl -0.044 7.044 28 C -0.024 4.024 29 H 0.255 0.745 30 H 0.368 0.632 31 H 0.022 0.978 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.406 0.594 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 -16.422 0.834 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.082 0.918 9 N -0.384 5.384 10 C 0.034 3.966 11 C -0.130 4.130 12 H 0.101 0.899 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.111 0.889 18 N -0.366 5.366 19 C 0.346 3.654 20 O -0.415 6.415 21 C -0.134 4.134 22 C -0.069 4.069 23 C -0.164 4.164 24 C 0.113 3.887 25 F -0.100 7.100 26 C -0.112 4.112 27 Cl -0.015 7.015 28 C -0.044 4.044 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.442 -15.548 0.423 19.918 hybrid contribution 0.537 -1.269 0.051 1.379 sum 12.979 -16.817 0.474 21.249 Atomic orbital electron populations 1.70891 1.06063 1.28469 1.53220 1.25774 0.97036 1.01012 1.00232 0.83260 0.74281 0.75659 0.75860 1.20982 1.22225 1.22223 1.19988 0.91943 0.85799 1.48940 0.91818 1.42315 1.04913 1.00641 1.90580 1.20626 0.93349 0.85288 0.97306 1.22256 0.98055 0.93552 0.99089 0.89922 1.22368 1.00653 0.95392 0.96606 1.22484 0.96831 0.96052 1.00823 1.22766 0.97875 0.99486 0.96917 1.21704 0.78605 0.96110 0.99143 0.88939 1.46314 1.08257 1.23654 1.58389 1.17993 0.85603 0.83526 0.78275 1.90779 1.76012 1.27131 1.47564 1.19999 0.94154 0.96149 1.03117 1.21400 0.94640 0.95612 0.95216 1.21134 0.93421 1.00125 1.01686 1.17659 0.78334 0.93889 0.98867 1.91567 1.30056 1.94418 1.93950 1.20858 0.92691 0.93055 1.04642 1.98401 1.66282 1.57478 1.79304 1.21051 0.89532 0.99413 0.94381 0.93344 0.79847 0.96055 0.96545 0.90969 0.91318 0.91433 0.91475 0.91270 0.91228 0.75389 0.83580 0.82728 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.29 13.70 55.49 0.76 -27.53 16 2 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 3 Si 1.08 25.01 29.92 -169.99 -5.09 19.93 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.34 -9.01 9.99 -15.06 -0.15 -9.16 16 8 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 9 N -0.74 -17.40 5.45 -59.91 -0.33 -17.73 16 10 C 0.16 2.91 4.19 -4.04 -0.02 2.90 16 11 C -0.11 -1.62 2.96 -89.50 -0.26 -1.88 16 12 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 13 C -0.11 -1.55 6.08 -25.08 -0.15 -1.70 16 14 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 15 C -0.13 -1.52 6.53 -25.08 -0.16 -1.68 16 16 C 0.15 1.93 3.22 -66.81 -0.22 1.72 16 17 H 0.09 1.28 7.56 -51.93 -0.39 0.89 16 18 N -0.71 -8.82 4.34 -53.70 -0.23 -9.05 16 19 C 0.56 7.29 7.77 -12.39 -0.10 7.19 16 20 O -0.54 -8.45 16.00 5.30 0.08 -8.37 16 21 C -0.13 -1.43 5.87 -104.97 -0.62 -2.04 16 22 C -0.05 -0.46 9.54 -39.20 -0.37 -0.83 16 23 C -0.14 -1.25 10.01 -39.58 -0.40 -1.65 16 24 C 0.13 1.31 7.28 -39.25 -0.29 1.03 16 25 F -0.12 -1.26 16.83 2.25 0.04 -1.22 16 26 C -0.08 -0.86 6.32 -39.49 -0.25 -1.11 16 27 Cl -0.04 -0.42 28.60 -51.86 -1.48 -1.91 16 28 C -0.02 -0.26 9.37 -39.16 -0.37 -0.62 16 29 H 0.26 7.53 6.77 -40.82 -0.28 7.25 16 30 H 0.37 8.97 6.38 -40.82 -0.26 8.71 16 31 H 0.02 0.40 7.42 -51.93 -0.39 0.01 16 32 H 0.02 0.29 7.10 -51.93 -0.37 -0.08 16 33 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 39 H 0.41 4.70 3.93 -40.82 -0.16 4.54 16 40 H 0.15 1.17 6.40 -52.49 -0.34 0.83 16 41 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.16 1.61 7.65 -52.49 -0.40 1.21 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -31.57 363.31 -9.53 -41.11 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.15 Total: 10.00 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.62 Total: -10.70 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.20 Total: -54.31 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.57 -9.53 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568536590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.352 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds