Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 119.99779 * 2 1 4 4 H 1.48504 * 109.47070 * 240.00139 * 3 2 1 5 5 H 1.48501 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47488 * 119.99949 * 3 2 1 7 7 C 1.38946 * 120.00514 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00165 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99686 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99870 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99994 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99934 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47071 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99831 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46833 * 179.97438 * 14 13 12 16 16 C 1.31005 * 119.99776 * 125.00436 * 15 14 13 17 17 C 1.50702 * 119.99932 * 180.27660 * 16 15 14 18 18 N 1.46500 * 109.47089 * 124.72256 * 17 16 15 19 19 C 1.34774 * 119.99908 * 180.02562 * 18 17 16 20 20 O 1.21717 * 119.99802 * 359.97438 * 19 18 17 21 21 C 1.46551 * 120.00079 * 179.97438 * 19 18 17 22 22 C 1.37929 * 126.22955 * 179.68757 * 21 19 18 23 23 C 1.39755 * 107.11886 * 179.88413 * 22 21 19 24 24 C 1.35661 * 107.88721 * 0.38292 * 23 22 21 25 25 Cl 1.73597 * 125.57857 * 179.73123 * 24 23 22 26 26 N 1.35582 * 108.84605 * 359.76144 * 24 23 22 27 27 H 0.97001 * 125.69891 * 179.97438 * 26 24 23 28 28 H 0.96995 * 120.00337 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99900 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46547 * 59.99958 * 12 10 9 31 31 H 1.09000 * 109.47221 * 299.99913 * 12 10 9 32 32 H 1.00899 * 111.00004 * 303.95534 * 13 12 10 33 33 H 1.09005 * 109.47160 * 60.00360 * 14 13 12 34 34 H 1.08994 * 109.46952 * 300.00282 * 14 13 12 35 35 H 1.08002 * 120.00511 * 305.00374 * 15 14 13 36 36 H 1.08002 * 119.99708 * 359.97438 * 16 15 14 37 37 H 1.09002 * 109.47005 * 244.72313 * 17 16 15 38 38 H 1.08999 * 109.47073 * 4.72010 * 17 16 15 39 39 H 0.96998 * 119.99957 * 359.97438 * 18 17 16 40 40 H 1.07995 * 126.44172 * 0.02562 * 22 21 19 41 41 H 1.07999 * 126.06042 * 180.14535 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1987 -5.9794 -0.0007 14 6 1.4984 -7.2708 -0.0008 15 6 2.5080 -8.3896 -0.0022 16 6 2.4643 -9.3124 0.9267 17 6 3.4778 -10.4278 0.9290 18 7 4.1570 -10.4678 2.2264 19 6 5.1110 -11.3909 2.4594 20 8 5.4078 -12.1916 1.5920 21 6 5.7909 -11.4306 3.7570 22 6 6.7762 -12.3190 4.1342 23 6 7.1410 -11.9969 5.4443 24 6 6.3826 -10.9444 5.8412 25 17 6.4554 -10.1765 7.3964 26 7 5.5579 -10.5908 4.8247 27 1 4.9116 -9.8678 4.8456 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9208 -0.8897 31 1 0.6177 -4.9205 0.8903 32 1 2.8329 -5.9123 -0.7825 33 1 0.8731 -7.3450 -0.8906 34 1 0.8739 -7.3455 0.8894 35 1 3.2675 -8.4308 -0.7689 36 1 1.7051 -9.2710 1.6937 37 1 2.9728 -11.3778 0.7537 38 1 4.2102 -10.2548 0.1405 39 1 3.9207 -9.8295 2.9175 40 1 7.1898 -13.1128 3.5300 41 1 7.8909 -12.4993 6.0372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568916024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -15.619171 kcal Electronic energy + Delta-G solvation = -24560.290945 eV Core-core repulsion = 20502.154021 eV Total energy + Delta-G solvation = -4058.136925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.81980 -39.52965 -38.38407 -37.20507 -36.82604 -35.38230 -33.97012 -33.04782 -31.70967 -31.25895 -29.93234 -28.33946 -26.19629 -24.42823 -23.18069 -22.39370 -21.15605 -20.80575 -20.39486 -19.43957 -19.04857 -17.92327 -16.70776 -16.52570 -16.19357 -15.90285 -15.54661 -15.00732 -14.77756 -14.56478 -14.50313 -14.43364 -13.91560 -13.88600 -13.67069 -13.48226 -13.31071 -13.17144 -12.57571 -12.42476 -12.17147 -11.84582 -11.76478 -11.63764 -11.55118 -11.28867 -11.05527 -10.63633 -10.47363 -10.25456 -9.77208 -9.65289 -9.54236 -9.38460 -8.66259 -8.52804 -8.12770 -8.00555 -6.45626 -3.86740 0.84833 1.11867 1.71623 2.06456 2.68215 2.89996 2.94468 3.17254 3.23255 3.27630 3.85763 4.06936 4.26042 4.36661 4.57670 4.68906 4.73897 4.78350 5.05834 5.15606 5.21182 5.27859 5.32537 5.36247 5.41784 5.57885 5.60505 5.73045 5.85934 5.89770 5.98562 6.19969 6.23047 6.32724 6.48445 6.56256 7.03520 7.09642 7.51221 7.54736 7.72173 8.01709 8.56683 9.13564 9.49527 10.00815 10.71915 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.001664 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.979287 B =16827.386106 C =18732.764682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.081 3.919 15 C -0.106 4.106 16 C -0.188 4.188 17 C 0.155 3.845 18 N -0.725 5.725 19 C 0.590 3.410 20 O -0.525 6.525 21 C -0.036 4.036 22 C -0.097 4.097 23 C -0.178 4.178 24 C 0.089 3.911 25 Cl -0.012 7.012 26 N -0.532 5.532 27 H 0.421 0.579 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.351 0.649 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.398 0.602 40 H 0.159 0.841 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -24.411 9.738 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.298 5.298 14 C -0.048 4.048 15 C -0.125 4.125 16 C -0.208 4.208 17 C 0.032 3.968 18 N -0.376 5.376 19 C 0.377 3.623 20 O -0.401 6.401 21 C -0.149 4.149 22 C -0.123 4.123 23 C -0.204 4.204 24 C -0.054 4.054 25 Cl 0.017 6.983 26 N -0.132 5.132 27 H 0.260 0.740 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.231 0.769 40 H 0.177 0.823 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.027 -24.611 9.857 27.188 hybrid contribution -1.121 1.748 -0.285 2.096 sum 4.906 -22.863 9.572 25.267 Atomic orbital electron populations 1.69598 1.05939 1.28323 1.50410 1.25270 0.95652 0.99761 0.97236 0.85907 0.78762 0.80383 0.79106 1.19887 1.20953 1.19863 1.19658 0.93361 0.82223 1.47800 0.87956 1.41857 1.09204 1.04595 1.64258 1.19783 0.88385 0.84704 0.84651 1.90525 1.13755 1.87044 1.55462 1.21692 0.94325 0.90943 1.01290 1.60135 1.18783 0.99459 1.51417 1.21098 0.94454 0.88184 1.01067 1.22916 0.98183 0.93379 0.98033 1.22715 1.00318 0.96964 1.00787 1.20354 0.93640 0.98098 0.84693 1.45909 1.39472 1.34763 1.17421 1.16919 0.79070 0.81041 0.85252 1.90878 1.64542 1.40066 1.44576 1.20475 1.06228 0.99023 0.89157 1.21327 0.96377 0.99469 0.95144 1.20720 1.03988 0.98768 0.96889 1.21090 0.99263 0.99582 0.85455 1.98426 1.97475 1.80882 1.21546 1.42035 1.31993 1.28397 1.10759 0.73985 0.91782 0.77443 0.93739 0.89564 0.82991 0.94172 0.90487 0.86805 0.86540 0.90431 0.90645 0.76860 0.82333 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.20 7.82 -10.98 -0.09 10.12 16 11 O -0.58 -15.70 15.78 5.55 0.09 -15.61 16 12 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 13 N -0.67 -10.17 6.12 -116.33 -0.71 -10.88 16 14 C 0.08 0.89 6.12 -4.98 -0.03 0.86 16 15 C -0.11 -1.00 9.38 -36.03 -0.34 -1.34 16 16 C -0.19 -1.52 9.24 -36.03 -0.33 -1.85 16 17 C 0.15 1.29 6.11 -5.19 -0.03 1.26 16 18 N -0.72 -5.89 5.54 -62.84 -0.35 -6.24 16 19 C 0.59 6.07 7.78 -12.91 -0.10 5.97 16 20 O -0.52 -7.15 16.88 5.17 0.09 -7.06 16 21 C -0.04 -0.32 7.06 -81.94 -0.58 -0.89 16 22 C -0.10 -0.82 10.65 -39.13 -0.42 -1.24 16 23 C -0.18 -1.31 10.78 -39.94 -0.43 -1.74 16 24 C 0.09 0.66 7.74 -16.82 -0.13 0.53 16 25 Cl -0.01 -0.08 29.30 -51.86 -1.52 -1.60 16 26 N -0.53 -3.69 6.00 -6.54 -0.04 -3.73 16 27 H 0.42 1.97 8.19 -40.82 -0.33 1.64 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.35 5.56 8.42 -39.29 -0.33 5.23 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 35 H 0.11 1.05 7.84 -52.49 -0.41 0.64 16 36 H 0.12 0.82 7.84 -52.49 -0.41 0.41 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.70 7.79 -51.93 -0.40 0.29 16 39 H 0.40 2.39 7.59 -40.82 -0.31 2.08 16 40 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -33.62 380.39 -8.79 -42.41 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -4.98 Total: 14.26 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.75 Total: 4.53 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.43 Total: -58.51 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.17 Total: -22.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.62 -8.79 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568916024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.788 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds