Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99751 * 2 1 4 4 H 1.48501 * 109.46817 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47184 * 300.00123 * 3 2 1 6 6 H 1.48503 * 109.47029 * 60.00327 * 3 2 1 7 7 C 1.38801 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00261 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99731 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00078 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47444 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99835 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00385 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47027 * 179.97438 * 14 13 11 16 16 H 1.09005 * 112.75197 * 284.23361 * 15 14 13 17 17 C 1.53511 * 113.47527 * 153.38384 * 15 14 13 18 18 C 1.53508 * 83.57903 * 219.20761 * 17 15 14 19 19 N 1.47483 * 113.47704 * 55.00614 * 15 14 13 20 20 C 1.46896 * 110.99891 * 253.46871 * 19 15 14 21 21 C 1.53000 * 109.47074 * 169.99933 * 20 19 15 22 22 C 1.50706 * 109.47116 * 179.97438 * 21 20 19 23 23 C 1.33391 * 125.19937 * 90.00083 * 22 21 20 24 24 C 1.38423 * 114.92045 * 179.97438 * 23 22 21 25 25 C 1.33390 * 114.91979 * 359.97438 * 24 23 22 26 26 S 1.75878 * 125.20693 * 269.69344 * 22 21 20 27 27 H 0.96998 * 120.00572 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.47175 * 59.99610 * 10 9 7 29 29 H 1.09003 * 109.47359 * 300.00328 * 10 9 7 30 30 H 0.97003 * 120.00057 * 0.02562 * 13 11 10 31 31 H 1.09006 * 109.46633 * 60.00460 * 14 13 11 32 32 H 1.08995 * 109.47300 * 300.00574 * 14 13 11 33 33 H 1.09000 * 114.17460 * 332.86253 * 17 15 14 34 34 H 1.09010 * 114.16996 * 105.37189 * 17 15 14 35 35 H 1.08997 * 113.47830 * 271.26118 * 18 17 15 36 36 H 1.08997 * 113.47822 * 140.78969 * 18 17 15 37 37 H 1.09000 * 109.47512 * 49.99611 * 20 19 15 38 38 H 1.09008 * 109.47405 * 290.00102 * 20 19 15 39 39 H 1.09000 * 109.46884 * 60.00395 * 21 20 19 40 40 H 1.09000 * 109.46955 * 299.99711 * 21 20 19 41 41 H 1.07995 * 122.54106 * 359.95411 * 23 22 21 42 42 H 1.08001 * 122.53959 * 180.02562 * 24 23 22 43 43 H 1.07998 * 125.20163 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 -0.0007 14 6 2.3306 -7.7151 -0.0008 15 6 3.5026 -8.6984 -0.0022 16 1 3.9836 -8.7797 -0.9770 17 6 3.1625 -10.0561 0.6284 18 6 4.5800 -9.9479 1.2078 19 7 4.4524 -8.4822 1.1052 20 6 5.6997 -7.8779 0.6185 21 6 6.5537 -7.4410 1.8105 22 6 7.8337 -6.8216 1.3112 23 6 8.0072 -5.5268 1.0413 24 6 9.2728 -5.1888 0.5940 25 6 10.1272 -6.2089 0.5012 26 16 9.3293 -7.6940 1.0026 27 1 -0.4851 0.8400 0.0004 28 1 3.1246 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 -0.0004 31 1 1.7216 -7.8749 -0.8906 32 1 1.7223 -7.8753 0.8894 33 1 2.3704 -10.0151 1.3760 34 1 3.0323 -10.8631 -0.0927 35 1 5.3484 -10.3635 0.5560 36 1 4.6580 -10.3061 2.2342 37 1 5.4665 -7.0104 0.0012 38 1 6.2501 -8.6083 0.0255 39 1 6.7870 -8.3085 2.4277 40 1 6.0033 -6.7105 2.4034 41 1 7.2198 -4.7976 1.1622 42 1 9.5478 -4.1757 0.3402 43 1 11.1531 -6.1338 0.1724 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569346380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = 28.776185 kcal Electronic energy + Delta-G solvation = -23988.956549 eV Core-core repulsion = 20481.081672 eV Total energy + Delta-G solvation = -3507.874877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80797 -38.82059 -38.17578 -34.40702 -33.92222 -32.40743 -30.31525 -29.72106 -27.52674 -26.88680 -25.45466 -23.92563 -23.29694 -22.07769 -20.40855 -20.00985 -19.46370 -17.85803 -17.42319 -16.61657 -16.40384 -16.04751 -15.73213 -15.36008 -15.08383 -14.78756 -14.50606 -14.17851 -13.88933 -13.59702 -13.28967 -13.20215 -13.02035 -12.68436 -12.61576 -12.57114 -12.41260 -12.02615 -11.77766 -11.64625 -11.37182 -11.13733 -11.05702 -11.00758 -10.99441 -10.80791 -10.70575 -9.78236 -9.40210 -9.25481 -9.05647 -8.90965 -8.77767 -8.75482 -8.19801 -6.46890 -6.19643 -3.89627 0.70796 1.34509 1.71058 2.49221 3.04888 3.17575 3.22853 3.28783 3.32966 3.50075 3.79897 4.09436 4.22429 4.39578 4.52970 4.55010 4.77147 4.82871 4.84941 4.91458 4.96952 5.05597 5.15532 5.23397 5.27602 5.32303 5.36739 5.38416 5.46958 5.58608 5.65835 5.70948 5.81173 5.86647 5.92288 5.93959 5.99129 6.04595 6.17347 6.24316 6.67068 6.70921 7.61884 7.78222 8.37542 8.68844 9.25777 10.87859 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008773 B = 0.002949 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.876862 B = 9493.477290 C =12494.261391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.732 5.732 14 C 0.140 3.860 15 C 0.014 3.986 16 H 0.084 0.916 17 C -0.135 4.135 18 C -0.003 4.003 19 N -0.463 5.463 20 C 0.023 3.977 21 C -0.040 4.040 22 C -0.171 4.171 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.217 4.217 26 S 0.083 5.917 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.161 -21.413 1.192 28.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.387 5.387 14 C 0.016 3.984 15 C -0.095 4.095 16 H 0.102 0.898 17 C -0.173 4.173 18 C -0.132 4.132 19 N -0.185 5.185 20 C -0.106 4.106 21 C -0.079 4.079 22 C -0.289 4.289 23 C -0.167 4.167 24 C -0.160 4.160 25 C -0.352 4.352 26 S 0.345 5.655 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 17.302 -22.714 1.885 28.616 hybrid contribution 2.599 2.535 -0.917 3.744 sum 19.901 -20.179 0.969 28.358 Atomic orbital electron populations 1.70026 1.05941 1.27306 1.47022 1.24988 0.95015 0.99003 0.94590 0.86128 0.79593 0.81949 0.77893 1.19630 1.20582 1.20564 1.22911 0.94928 0.91687 1.58720 0.90925 1.85394 1.04983 0.96268 1.96686 1.23520 1.06499 0.95563 1.04747 1.20278 0.86528 0.86270 0.75214 1.90696 1.15348 1.85611 1.47738 1.45920 1.09792 1.05383 1.77642 1.21226 0.94482 0.80251 1.02490 1.23705 0.94961 0.95844 0.95014 0.89825 1.23176 0.97706 0.95895 1.00521 1.23838 0.97149 0.89818 1.02409 1.68919 1.08178 1.10453 1.30983 1.22769 0.91342 1.00020 0.96468 1.19992 0.89734 1.00962 0.97242 1.24483 0.98909 0.96996 1.08470 1.20265 0.98278 0.95636 1.02494 1.20250 0.93232 1.00340 1.02178 1.25589 1.04050 0.95516 1.10046 1.84220 1.04255 1.11755 1.65233 0.92261 0.89315 0.89460 0.77114 0.91310 0.90940 0.88252 0.90211 0.91241 0.89427 0.90621 0.93251 0.90720 0.88797 0.83857 0.84139 0.82033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.15 6.15 36.00 0.22 -2.93 16 11 C 0.53 10.23 7.85 -10.99 -0.09 10.14 16 12 O -0.52 -12.08 15.86 5.56 0.09 -11.99 16 13 N -0.73 -10.30 5.46 -60.30 -0.33 -10.63 16 14 C 0.14 1.67 5.81 -4.04 -0.02 1.65 16 15 C 0.01 0.12 3.23 -71.43 -0.23 -0.11 16 16 H 0.08 0.64 7.91 -51.93 -0.41 0.23 16 17 C -0.13 -0.89 8.00 -26.20 -0.21 -1.10 16 18 C 0.00 -0.02 7.71 -7.54 -0.06 -0.08 16 19 N -0.46 -3.95 5.90 -236.49 -1.40 -5.34 16 20 C 0.02 0.19 4.55 -3.83 -0.02 0.17 16 21 C -0.04 -0.32 6.04 -27.88 -0.17 -0.49 16 22 C -0.17 -1.52 5.76 -36.00 -0.21 -1.73 16 23 C -0.14 -1.29 10.05 -41.21 -0.41 -1.70 16 24 C -0.13 -1.14 10.18 -41.21 -0.42 -1.56 16 25 C -0.22 -1.75 11.23 29.04 0.33 -1.42 16 26 S 0.08 0.67 23.33 -107.50 -2.51 -1.84 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 30 H 0.39 4.68 6.22 -40.82 -0.25 4.43 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.95 7.88 -51.93 -0.41 0.55 16 33 H 0.10 0.71 7.94 -51.93 -0.41 0.29 16 34 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.07 0.39 7.42 -51.93 -0.39 0.01 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.65 6.27 -51.93 -0.33 0.32 16 38 H 0.05 0.37 7.30 -51.92 -0.38 -0.01 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -34.52 384.99 -12.28 -46.81 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.35 Total: 2.36 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.09 Total: -12.21 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.99 Total: -41.58 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -4.72 Total: -5.70 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.52 -12.28 -46.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569346380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.582 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds