Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99751 * 2 1 4 4 H 1.48501 * 109.46817 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47184 * 300.00123 * 3 2 1 6 6 H 1.48503 * 109.47029 * 60.00327 * 3 2 1 7 7 C 1.38801 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00261 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99731 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00078 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47444 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99835 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00385 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47027 * 179.97438 * 14 13 11 16 16 H 1.09005 * 112.75197 * 284.23361 * 15 14 13 17 17 C 1.53511 * 113.47527 * 153.38384 * 15 14 13 18 18 C 1.53508 * 83.57903 * 219.20761 * 17 15 14 19 19 N 1.47483 * 113.47704 * 55.00614 * 15 14 13 20 20 C 1.46896 * 110.99891 * 253.46871 * 19 15 14 21 21 C 1.53000 * 109.47074 * 169.99933 * 20 19 15 22 22 C 1.50706 * 109.47116 * 179.97438 * 21 20 19 23 23 C 1.33391 * 125.19937 * 90.00083 * 22 21 20 24 24 C 1.38423 * 114.92045 * 179.97438 * 23 22 21 25 25 C 1.33390 * 114.91979 * 359.97438 * 24 23 22 26 26 S 1.75878 * 125.20693 * 269.69344 * 22 21 20 27 27 H 0.96998 * 120.00572 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.47175 * 59.99610 * 10 9 7 29 29 H 1.09003 * 109.47359 * 300.00328 * 10 9 7 30 30 H 0.97003 * 120.00057 * 0.02562 * 13 11 10 31 31 H 1.09006 * 109.46633 * 60.00460 * 14 13 11 32 32 H 1.08995 * 109.47300 * 300.00574 * 14 13 11 33 33 H 1.09000 * 114.17460 * 332.86253 * 17 15 14 34 34 H 1.09010 * 114.16996 * 105.37189 * 17 15 14 35 35 H 1.08997 * 113.47830 * 271.26118 * 18 17 15 36 36 H 1.08997 * 113.47822 * 140.78969 * 18 17 15 37 37 H 1.09000 * 109.47512 * 49.99611 * 20 19 15 38 38 H 1.09008 * 109.47405 * 290.00102 * 20 19 15 39 39 H 1.09000 * 109.46884 * 60.00395 * 21 20 19 40 40 H 1.09000 * 109.46955 * 299.99711 * 21 20 19 41 41 H 1.07995 * 122.54106 * 359.95411 * 23 22 21 42 42 H 1.08001 * 122.53959 * 180.02562 * 24 23 22 43 43 H 1.07998 * 125.20163 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 -0.0007 14 6 2.3306 -7.7151 -0.0008 15 6 3.5026 -8.6984 -0.0022 16 1 3.9836 -8.7797 -0.9770 17 6 3.1625 -10.0561 0.6284 18 6 4.5800 -9.9479 1.2078 19 7 4.4524 -8.4822 1.1052 20 6 5.6997 -7.8779 0.6185 21 6 6.5537 -7.4410 1.8105 22 6 7.8337 -6.8216 1.3112 23 6 8.0072 -5.5268 1.0413 24 6 9.2728 -5.1888 0.5940 25 6 10.1272 -6.2089 0.5012 26 16 9.3293 -7.6940 1.0026 27 1 -0.4851 0.8400 0.0004 28 1 3.1246 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 -0.0004 31 1 1.7216 -7.8749 -0.8906 32 1 1.7223 -7.8753 0.8894 33 1 2.3704 -10.0151 1.3760 34 1 3.0323 -10.8631 -0.0927 35 1 5.3484 -10.3635 0.5560 36 1 4.6580 -10.3061 2.2342 37 1 5.4665 -7.0104 0.0012 38 1 6.2501 -8.6083 0.0255 39 1 6.7870 -8.3085 2.4277 40 1 6.0033 -6.7105 2.4034 41 1 7.2198 -4.7976 1.1622 42 1 9.5478 -4.1757 0.3402 43 1 11.1531 -6.1338 0.1724 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569346380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = 5.189819 kcal Electronic energy + Delta-G solvation = -23989.979330 eV Core-core repulsion = 20481.081672 eV Total energy + Delta-G solvation = -3508.897658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53155 -40.26126 -38.81921 -35.62755 -34.66785 -34.58314 -31.58710 -30.56714 -28.65287 -27.62102 -27.50620 -24.54568 -24.10814 -22.72317 -21.78656 -20.74346 -20.12707 -19.80794 -18.06705 -17.91258 -17.41049 -17.13180 -16.88241 -16.52347 -16.38963 -16.07042 -15.86091 -15.27176 -14.97120 -14.62709 -14.47737 -14.35852 -13.98300 -13.82296 -13.54782 -13.31009 -13.23685 -13.16142 -12.97720 -12.89646 -12.64597 -12.60130 -12.33253 -12.02372 -11.77615 -11.71215 -11.64009 -11.46619 -11.15862 -10.91702 -10.27780 -10.09824 -9.90710 -9.54898 -9.38385 -8.66746 -8.34708 -6.12766 0.06432 0.71924 1.07558 1.26767 1.41345 1.46845 1.58139 1.62032 1.82828 2.24323 2.28433 2.90934 2.99443 3.32025 3.49419 3.76712 3.84450 3.89297 4.01677 4.10572 4.17945 4.26127 4.27476 4.34240 4.39226 4.47007 4.48208 4.56490 4.68160 4.74349 4.80848 4.86172 4.88382 5.02259 5.06965 5.20624 5.25918 5.30884 5.40583 5.42015 5.49749 5.59577 6.06999 6.20098 6.47961 7.06596 7.23694 8.74852 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008773 B = 0.002949 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.876862 B = 9493.477290 C =12494.261391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.707 5.707 14 C 0.137 3.863 15 C 0.020 3.980 16 H 0.099 0.901 17 C -0.127 4.127 18 C 0.002 3.998 19 N -0.482 5.482 20 C 0.028 3.972 21 C -0.034 4.034 22 C -0.179 4.179 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.218 4.218 26 S 0.095 5.905 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.408 0.592 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.150 0.850 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.988 -22.355 0.893 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.361 5.361 14 C 0.013 3.987 15 C -0.090 4.090 16 H 0.117 0.883 17 C -0.165 4.165 18 C -0.127 4.127 19 N -0.205 5.205 20 C -0.101 4.101 21 C -0.074 4.074 22 C -0.297 4.297 23 C -0.183 4.183 24 C -0.176 4.176 25 C -0.354 4.354 26 S 0.357 5.643 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.245 0.755 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 20.182 -23.700 1.590 31.170 hybrid contribution 1.781 2.689 -0.804 3.324 sum 21.963 -21.011 0.786 30.405 Atomic orbital electron populations 1.70185 1.07968 1.28560 1.48051 1.26126 0.95968 1.03295 0.93727 0.84909 0.78611 0.76327 0.78120 1.18037 1.19848 1.19901 1.23232 0.95320 0.91997 1.58806 0.89995 1.85562 1.10403 0.99137 1.97020 1.23359 1.03600 0.94624 1.06454 1.20055 0.86259 0.86682 0.75240 1.90683 1.17286 1.86102 1.50384 1.45722 1.09904 1.05327 1.75163 1.21415 0.96156 0.79395 1.01718 1.23706 0.93812 0.95534 0.95965 0.88297 1.23167 0.97657 0.95198 1.00528 1.23871 0.97391 0.88359 1.03040 1.68905 1.08469 1.12084 1.31061 1.22722 0.91211 0.99974 0.96239 1.19927 0.89449 1.00740 0.97288 1.24600 0.99525 0.97092 1.08455 1.20402 0.98720 0.95967 1.03216 1.20425 0.93216 1.01180 1.02743 1.25907 1.04927 0.95225 1.09309 1.84148 1.03631 1.11586 1.64894 0.91974 0.87608 0.87487 0.75509 0.91563 0.92317 0.88996 0.88195 0.89672 0.89120 0.91330 0.92214 0.90189 0.89995 0.84188 0.83211 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.42 13.22 21.65 0.29 -56.14 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -31.54 9.50 67.95 0.65 -30.90 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.13 -5.31 6.15 71.23 0.44 -4.87 16 11 C 0.53 20.51 7.85 87.66 0.69 21.19 16 12 O -0.57 -27.03 15.86 -3.03 -0.05 -27.08 16 13 N -0.71 -19.22 5.46 -463.07 -2.53 -21.75 16 14 C 0.14 3.15 5.81 86.38 0.50 3.65 16 15 C 0.02 0.29 3.23 42.19 0.14 0.42 16 16 H 0.10 1.20 7.91 -2.38 -0.02 1.18 16 17 C -0.13 -1.38 8.00 30.94 0.25 -1.13 16 18 C 0.00 0.02 7.71 83.58 0.64 0.66 16 19 N -0.48 -7.24 5.90 -902.13 -5.32 -12.56 16 20 C 0.03 0.39 4.55 86.30 0.39 0.78 16 21 C -0.03 -0.51 6.04 29.85 0.18 -0.33 16 22 C -0.18 -2.95 5.76 24.59 0.14 -2.81 16 23 C -0.15 -2.74 10.05 21.22 0.21 -2.52 16 24 C -0.15 -2.37 10.18 21.22 0.22 -2.16 16 25 C -0.22 -3.12 11.23 66.72 0.75 -2.37 16 26 S 0.09 1.36 23.33 -56.49 -1.32 0.04 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 29 H 0.11 3.96 8.14 -2.39 -0.02 3.95 16 30 H 0.41 9.02 6.22 -92.71 -0.58 8.45 16 31 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.06 1.54 7.88 -2.39 -0.02 1.52 16 33 H 0.09 1.16 7.94 -2.39 -0.02 1.14 16 34 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.09 0.65 7.42 -2.39 -0.02 0.63 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.04 6.27 -2.39 -0.01 1.02 16 38 H 0.06 0.71 7.30 -2.38 -0.02 0.70 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -76.48 384.99 -1.97 -78.44 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.44 Total: 21.78 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 5.66 Total: -19.14 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -7.57 Total: -90.44 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -2.48 Total: -9.51 kcal Total: -76.48 -1.97 -78.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569346380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.633 kcal (2) G-P(sol) polarization free energy of solvation -76.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds