Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99897 * 2 1 4 4 H 1.48495 * 109.47409 * 270.00483 * 3 2 1 5 5 H 1.48503 * 109.47293 * 30.00738 * 3 2 1 6 6 H 1.48499 * 109.46935 * 150.00092 * 3 2 1 7 7 C 1.38813 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00121 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47159 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.46737 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.89419 * 57.42731 * 12 11 10 14 14 C 1.55161 * 111.00093 * 181.35170 * 12 11 10 15 15 C 1.54331 * 103.02266 * 153.37997 * 14 12 11 16 16 N 1.47025 * 107.26386 * 338.14028 * 15 14 12 17 17 C 1.34783 * 125.64664 * 178.85172 * 16 15 14 18 18 O 1.21573 * 119.99586 * 184.99317 * 17 16 15 19 19 C 1.47629 * 120.00220 * 4.99078 * 17 16 15 20 20 C 1.39704 * 120.15157 * 44.29786 * 19 17 16 21 21 C 1.37792 * 119.89009 * 179.97438 * 20 19 17 22 22 C 1.38617 * 120.20584 * 0.03027 * 21 20 19 23 23 Cl 1.73595 * 119.84454 * 179.97438 * 22 21 20 24 24 C 1.38355 * 120.30975 * 0.02562 * 22 21 20 25 25 C 1.38256 * 120.10377 * 359.95438 * 24 22 21 26 26 F 1.35101 * 120.10085 * 180.02562 * 25 24 22 27 27 C 1.47425 * 108.70184 * 358.58620 * 16 15 14 28 28 H 0.97002 * 119.99660 * 359.97438 * 1 2 3 29 29 H 0.97008 * 120.00327 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46965 * 59.99430 * 10 9 7 31 31 H 1.08995 * 109.46810 * 299.99422 * 10 9 7 32 32 H 1.08995 * 109.46888 * 59.99973 * 11 10 9 33 33 H 1.09004 * 109.46905 * 299.99811 * 11 10 9 34 34 H 1.09004 * 110.71650 * 271.93663 * 14 12 11 35 35 H 1.08997 * 110.72293 * 35.02921 * 14 12 11 36 36 H 1.08993 * 109.99270 * 218.66506 * 15 14 12 37 37 H 1.09002 * 109.78210 * 97.49039 * 15 14 12 38 38 H 1.08000 * 120.05304 * 0.02562 * 20 19 17 39 39 H 1.07998 * 119.89467 * 180.30443 * 21 20 19 40 40 H 1.08000 * 119.94410 * 179.97438 * 24 22 21 41 41 H 1.08995 * 110.36407 * 143.20338 * 27 16 15 42 42 H 1.09001 * 110.36141 * 265.40549 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8198 -0.0031 12 6 1.8289 -6.1447 -0.0037 13 1 2.4981 -6.2075 0.8544 14 6 0.8528 -7.3504 -0.0383 15 6 1.6924 -8.4583 -0.7085 16 7 2.7626 -7.7956 -1.4683 17 6 3.7234 -8.4190 -2.1787 18 8 4.6137 -7.7721 -2.6954 19 6 3.6949 -9.8873 -2.3295 20 6 2.4951 -10.5391 -2.6253 21 6 2.4748 -11.9097 -2.7654 22 6 3.6407 -12.6437 -2.6130 23 17 3.6042 -14.3702 -2.7908 24 6 4.8333 -12.0070 -2.3188 25 6 4.8685 -10.6323 -2.1759 26 9 6.0331 -10.0105 -1.8892 27 6 2.6067 -6.3362 -1.3295 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6849 -3.7153 0.8872 31 1 2.6847 -3.7138 -0.8928 32 1 0.4369 -4.7614 -0.8928 33 1 0.4375 -4.7626 0.8872 34 1 0.5627 -7.6407 0.9716 35 1 -0.0266 -7.1176 -0.6387 36 1 1.0670 -9.0435 -1.3826 37 1 2.1255 -9.1055 0.0542 38 1 1.5854 -9.9695 -2.7449 39 1 1.5483 -12.4132 -2.9989 40 1 5.7381 -12.5847 -2.2009 41 1 3.5826 -5.8545 -1.2699 42 1 2.0367 -5.9343 -2.1672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569991815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -48.484438 kcal Electronic energy + Delta-G solvation = -26133.723761 eV Core-core repulsion = 22054.241730 eV Total energy + Delta-G solvation = -4079.482031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.38829 -40.70792 -39.23338 -37.86141 -37.02958 -35.19001 -33.20471 -31.84667 -31.26428 -30.85870 -29.60099 -27.25417 -25.16707 -23.85778 -23.31889 -22.94884 -21.32407 -20.37512 -20.00501 -18.29652 -17.77048 -17.33465 -17.05820 -16.39155 -16.12348 -15.96436 -15.65264 -15.02166 -14.67443 -14.63600 -14.10514 -13.99569 -13.79454 -13.60228 -13.44568 -13.25681 -13.01359 -12.83470 -12.80373 -12.31876 -12.12110 -11.92109 -11.72697 -11.65883 -11.35094 -11.09356 -10.82864 -10.69240 -10.50690 -10.36768 -10.24071 -9.98955 -9.69502 -9.65697 -9.34024 -8.85757 -8.85277 -6.90538 -5.75178 -3.03601 0.03894 0.43498 1.34520 2.24040 2.58397 2.93371 3.45569 3.50673 3.52286 3.57655 3.91479 3.98691 4.26842 4.37543 4.45948 4.48939 4.62663 4.69583 4.78685 5.02120 5.09609 5.14946 5.27937 5.34092 5.39543 5.41666 5.50128 5.57101 5.62880 5.73251 5.77701 5.85817 5.94916 6.02592 6.07731 6.21665 6.35188 6.36157 6.83871 6.87686 7.20305 7.72434 7.81791 8.44129 9.55164 10.13123 10.47594 11.47814 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.001871 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.385115 B =14959.228661 C =15640.975907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.128 4.128 15 C 0.095 3.905 16 N -0.611 5.611 17 C 0.572 3.428 18 O -0.518 6.518 19 C -0.154 4.154 20 C -0.048 4.048 21 C -0.125 4.125 22 C 0.009 3.991 23 Cl -0.050 7.050 24 C -0.153 4.153 25 C 0.165 3.835 26 F -0.113 7.113 27 C 0.109 3.891 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.085 0.915 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -32.459 -3.590 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.152 4.152 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.166 4.166 15 C -0.028 4.028 16 N -0.345 5.345 17 C 0.359 3.641 18 O -0.394 6.394 19 C -0.158 4.158 20 C -0.067 4.067 21 C -0.144 4.144 22 C -0.018 4.018 23 Cl -0.021 7.021 24 C -0.173 4.173 25 C 0.144 3.856 26 F -0.092 7.092 27 C -0.012 4.012 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.171 0.829 41 H 0.103 0.897 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.197 -32.144 -3.910 32.538 hybrid contribution 0.347 0.814 0.030 0.885 sum 3.544 -31.330 -3.880 31.768 Atomic orbital electron populations 1.69664 1.05098 1.25606 1.57993 1.24747 0.95557 0.97721 1.03116 0.86178 0.78652 0.83776 0.77542 1.21712 1.21771 1.20756 1.19249 0.91079 0.84210 1.42419 0.91179 1.42360 1.05851 1.00080 1.89524 1.20691 0.93568 0.85581 0.97898 1.21683 0.98558 0.92390 1.02608 1.22346 0.96854 0.95023 0.97127 0.89573 1.22740 0.98134 0.94203 1.01557 1.22268 0.89037 0.96324 0.95142 1.48415 1.28410 1.08495 1.49163 1.17535 0.81270 0.86153 0.79116 1.90876 1.34462 1.66501 1.47530 1.20133 0.93772 0.94381 1.07563 1.21284 0.96775 0.93721 0.94897 1.21077 0.97864 0.93487 1.01959 1.20819 0.94412 0.85837 1.00699 1.98413 1.98763 1.09258 1.95641 1.20955 0.99182 0.92554 1.04595 1.17377 0.81190 0.89603 0.97440 1.91619 1.45111 1.82529 1.89891 1.22485 1.01884 0.78827 0.98009 0.93560 0.78333 0.96422 0.96245 0.91528 0.91204 0.89701 0.90014 0.91122 0.91223 0.83071 0.83394 0.82859 0.89700 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.71 5.60 -59.90 -0.34 -19.05 16 10 C 0.15 2.97 6.11 -4.04 -0.02 2.94 16 11 C -0.11 -1.67 4.84 -26.73 -0.13 -1.80 16 12 C -0.09 -1.07 3.08 -88.47 -0.27 -1.34 16 13 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.13 -1.05 6.42 -24.89 -0.16 -1.20 16 15 C 0.09 0.73 5.90 -3.06 -0.02 0.71 16 16 N -0.61 -6.93 3.33 -171.71 -0.57 -7.51 16 17 C 0.57 7.55 7.22 -12.42 -0.09 7.46 16 18 O -0.52 -9.07 16.68 5.30 0.09 -8.98 16 19 C -0.15 -1.54 5.40 -104.91 -0.57 -2.11 16 20 C -0.05 -0.32 8.43 -39.20 -0.33 -0.65 16 21 C -0.13 -0.68 9.81 -39.60 -0.39 -1.07 16 22 C 0.01 0.06 6.32 -39.40 -0.25 -0.19 16 23 Cl -0.05 -0.29 28.94 -51.86 -1.50 -1.79 16 24 C -0.15 -1.14 9.79 -39.53 -0.39 -1.52 16 25 C 0.16 1.65 7.25 -38.97 -0.28 1.37 16 26 F -0.11 -1.41 16.37 2.25 0.04 -1.38 16 27 C 0.11 1.39 5.59 -2.53 -0.01 1.38 16 28 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.02 0.40 7.46 -51.93 -0.39 0.01 16 32 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.63 8.04 -51.93 -0.42 0.22 16 36 H 0.07 0.38 5.70 -51.93 -0.30 0.09 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.15 0.72 6.09 -52.49 -0.32 0.40 16 39 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 42 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -34.21 368.45 -9.67 -43.89 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.49 Total: 2.79 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.16 Total: -3.52 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.18 Total: -54.28 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.50 Total: -1.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.21 -9.67 -43.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569991815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.596 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds