Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99897 * 2 1 4 4 H 1.48495 * 109.47409 * 270.00483 * 3 2 1 5 5 H 1.48503 * 109.47293 * 30.00738 * 3 2 1 6 6 H 1.48499 * 109.46935 * 150.00092 * 3 2 1 7 7 C 1.38813 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00249 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00121 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47159 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.46737 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.89419 * 57.42731 * 12 11 10 14 14 C 1.55161 * 111.00093 * 181.35170 * 12 11 10 15 15 C 1.54331 * 103.02266 * 153.37997 * 14 12 11 16 16 N 1.47025 * 107.26386 * 338.14028 * 15 14 12 17 17 C 1.34783 * 125.64664 * 178.85172 * 16 15 14 18 18 O 1.21573 * 119.99586 * 184.99317 * 17 16 15 19 19 C 1.47629 * 120.00220 * 4.99078 * 17 16 15 20 20 C 1.39704 * 120.15157 * 44.29786 * 19 17 16 21 21 C 1.37792 * 119.89009 * 179.97438 * 20 19 17 22 22 C 1.38617 * 120.20584 * 0.03027 * 21 20 19 23 23 Cl 1.73595 * 119.84454 * 179.97438 * 22 21 20 24 24 C 1.38355 * 120.30975 * 0.02562 * 22 21 20 25 25 C 1.38256 * 120.10377 * 359.95438 * 24 22 21 26 26 F 1.35101 * 120.10085 * 180.02562 * 25 24 22 27 27 C 1.47425 * 108.70184 * 358.58620 * 16 15 14 28 28 H 0.97002 * 119.99660 * 359.97438 * 1 2 3 29 29 H 0.97008 * 120.00327 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46965 * 59.99430 * 10 9 7 31 31 H 1.08995 * 109.46810 * 299.99422 * 10 9 7 32 32 H 1.08995 * 109.46888 * 59.99973 * 11 10 9 33 33 H 1.09004 * 109.46905 * 299.99811 * 11 10 9 34 34 H 1.09004 * 110.71650 * 271.93663 * 14 12 11 35 35 H 1.08997 * 110.72293 * 35.02921 * 14 12 11 36 36 H 1.08993 * 109.99270 * 218.66506 * 15 14 12 37 37 H 1.09002 * 109.78210 * 97.49039 * 15 14 12 38 38 H 1.08000 * 120.05304 * 0.02562 * 20 19 17 39 39 H 1.07998 * 119.89467 * 180.30443 * 21 20 19 40 40 H 1.08000 * 119.94410 * 179.97438 * 24 22 21 41 41 H 1.08995 * 110.36407 * 143.20338 * 27 16 15 42 42 H 1.09001 * 110.36141 * 265.40549 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8198 -0.0031 12 6 1.8289 -6.1447 -0.0037 13 1 2.4981 -6.2075 0.8544 14 6 0.8528 -7.3504 -0.0383 15 6 1.6924 -8.4583 -0.7085 16 7 2.7626 -7.7956 -1.4683 17 6 3.7234 -8.4190 -2.1787 18 8 4.6137 -7.7721 -2.6954 19 6 3.6949 -9.8873 -2.3295 20 6 2.4951 -10.5391 -2.6253 21 6 2.4748 -11.9097 -2.7654 22 6 3.6407 -12.6437 -2.6130 23 17 3.6042 -14.3702 -2.7908 24 6 4.8333 -12.0070 -2.3188 25 6 4.8685 -10.6323 -2.1759 26 9 6.0331 -10.0105 -1.8892 27 6 2.6067 -6.3362 -1.3295 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6849 -3.7153 0.8872 31 1 2.6847 -3.7138 -0.8928 32 1 0.4369 -4.7614 -0.8928 33 1 0.4375 -4.7626 0.8872 34 1 0.5627 -7.6407 0.9716 35 1 -0.0266 -7.1176 -0.6387 36 1 1.0670 -9.0435 -1.3826 37 1 2.1255 -9.1055 0.0542 38 1 1.5854 -9.9695 -2.7449 39 1 1.5483 -12.4132 -2.9989 40 1 5.7381 -12.5847 -2.2009 41 1 3.5826 -5.8545 -1.2699 42 1 2.0367 -5.9343 -2.1672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569991815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -69.598760 kcal Electronic energy + Delta-G solvation = -26134.639347 eV Core-core repulsion = 22054.241730 eV Total energy + Delta-G solvation = -4080.397617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.19102 -41.55854 -39.90953 -38.86366 -37.55449 -36.87062 -34.65394 -33.03925 -32.13304 -31.74916 -30.73577 -28.57178 -26.36054 -25.14213 -24.13345 -23.87943 -22.69824 -21.32729 -20.92430 -19.16879 -18.99294 -18.53838 -18.03883 -17.25215 -16.97260 -16.78141 -16.64872 -16.36073 -16.02248 -15.38364 -15.34835 -15.19572 -14.90744 -14.77662 -14.36920 -14.34689 -14.07485 -13.90462 -13.53025 -13.35050 -13.02442 -12.98787 -12.84561 -12.72933 -12.50542 -12.29647 -12.18977 -12.09684 -12.00496 -11.71001 -11.53247 -11.42101 -11.25610 -10.94130 -10.25141 -9.98171 -9.74403 -9.01452 -7.97508 -5.26095 -0.58798 -0.11363 0.84351 1.38108 1.45698 1.47453 1.55950 1.73892 2.26474 2.54334 2.94708 3.16772 3.35798 3.42834 3.59747 3.62924 3.78901 3.80678 3.89627 4.15715 4.18498 4.31355 4.33129 4.48661 4.50552 4.56920 4.61309 4.73996 4.76705 4.84051 4.85473 4.89558 4.92334 4.97711 5.11377 5.16273 5.28675 5.37826 5.40728 5.46303 5.48501 6.25900 6.31164 6.86095 7.31945 8.08147 8.32062 9.25795 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.001871 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.385115 B =14959.228661 C =15640.975907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.746 5.746 10 C 0.146 3.854 11 C -0.098 4.098 12 C -0.086 4.086 13 H 0.085 0.915 14 C -0.118 4.118 15 C 0.090 3.910 16 N -0.608 5.608 17 C 0.565 3.435 18 O -0.578 6.578 19 C -0.170 4.170 20 C -0.037 4.037 21 C -0.108 4.108 22 C 0.011 3.989 23 Cl -0.040 7.040 24 C -0.149 4.149 25 C 0.136 3.864 26 F -0.138 7.138 27 C 0.107 3.893 28 H 0.253 0.747 29 H 0.376 0.624 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.165 0.835 41 H 0.052 0.948 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -35.105 -3.374 35.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.389 5.389 10 C 0.020 3.980 11 C -0.137 4.137 12 C -0.106 4.106 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.030 4.030 16 N -0.340 5.340 17 C 0.355 3.645 18 O -0.459 6.459 19 C -0.174 4.174 20 C -0.055 4.055 21 C -0.126 4.126 22 C -0.017 4.017 23 Cl -0.010 7.010 24 C -0.168 4.168 25 C 0.116 3.884 26 F -0.117 7.117 27 C -0.015 4.015 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.193 0.807 39 H 0.199 0.801 40 H 0.183 0.817 41 H 0.071 0.929 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.578 -34.843 -3.669 35.072 hybrid contribution 0.849 1.524 -0.052 1.745 sum 2.427 -33.319 -3.721 33.614 Atomic orbital electron populations 1.69804 1.06428 1.26153 1.59326 1.25563 0.96504 1.01039 1.03575 0.85150 0.77695 0.79517 0.77467 1.21425 1.21701 1.19710 1.19618 0.91387 0.85665 1.41509 0.91197 1.42573 1.05720 1.01227 1.89412 1.20879 0.94535 0.85442 0.97133 1.21514 0.97439 0.91780 1.02918 1.22203 0.97373 0.94938 0.96065 0.89686 1.22754 0.97391 0.92072 1.03293 1.22586 0.88270 0.96358 0.95835 1.48494 1.28827 1.07974 1.48663 1.18111 0.80581 0.87512 0.78328 1.90832 1.36858 1.68053 1.50150 1.20014 0.95261 0.92334 1.09769 1.21502 0.96092 0.94298 0.93648 1.21434 0.98662 0.92822 0.99675 1.20963 0.94372 0.86414 0.99907 1.98425 1.98724 1.08387 1.95492 1.21048 1.00348 0.91445 1.03974 1.17704 0.80611 0.90674 0.99435 1.91550 1.46497 1.83155 1.90466 1.22362 1.00324 0.80060 0.98770 0.93869 0.79197 0.96714 0.96987 0.91394 0.90594 0.87398 0.88932 0.87778 0.89790 0.80740 0.80050 0.81734 0.92906 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.75 -38.71 5.60 -343.44 -1.92 -40.63 16 10 C 0.15 5.90 6.11 86.38 0.53 6.42 16 11 C -0.10 -2.81 4.84 30.59 0.15 -2.66 16 12 C -0.09 -1.87 3.08 -9.40 -0.03 -1.90 16 13 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 14 C -0.12 -1.51 6.42 31.79 0.20 -1.30 16 15 C 0.09 1.09 5.90 86.73 0.51 1.61 16 16 N -0.61 -13.42 3.33 -815.43 -2.71 -16.13 16 17 C 0.57 15.28 7.22 86.72 0.63 15.91 16 18 O -0.58 -21.78 16.68 -3.95 -0.07 -21.85 16 19 C -0.17 -3.26 5.40 -20.05 -0.11 -3.37 16 20 C -0.04 -0.37 8.43 22.52 0.19 -0.18 16 21 C -0.11 -0.74 9.81 22.25 0.22 -0.52 16 22 C 0.01 0.11 6.32 22.39 0.14 0.25 16 23 Cl -0.04 -0.35 28.94 -2.72 -0.08 -0.43 16 24 C -0.15 -2.03 9.79 22.30 0.22 -1.81 16 25 C 0.14 2.76 7.25 22.67 0.16 2.92 16 26 F -0.14 -3.70 16.37 44.97 0.74 -2.97 16 27 C 0.11 2.79 5.59 86.85 0.49 3.28 16 28 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.38 20.25 7.67 -92.70 -0.71 19.54 16 30 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.01 0.51 7.46 -2.39 -0.02 0.49 16 32 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.09 1.06 8.04 -2.39 -0.02 1.04 16 36 H 0.10 0.61 5.70 -2.39 -0.01 0.60 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.18 0.87 6.09 -2.91 -0.02 0.86 16 39 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 40 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.05 1.69 7.92 -2.39 -0.02 1.67 16 42 H 0.07 1.91 8.01 -2.39 -0.02 1.89 16 Total: -1.00 -78.00 368.45 3.22 -74.78 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.35 Total: 16.15 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 4.60 Total: 1.15 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -4.35 Total: -115.99 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.07 Total: -21.85 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.74 Total: -2.97 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -78.00 3.22 -74.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569991815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.185 kcal (2) G-P(sol) polarization free energy of solvation -78.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds