Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 120.00152 * 2 1 4 4 H 1.48496 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 300.00564 * 3 2 1 6 6 H 1.48500 * 109.46981 * 59.99948 * 3 2 1 7 7 C 1.38798 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99988 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99986 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00433 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99930 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46674 * 179.97438 * 14 13 11 16 16 N 1.46505 * 109.46668 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99553 * 180.02562 * 16 15 14 18 18 O 1.21552 * 120.00298 * 0.02562 * 17 16 15 19 19 C 1.47845 * 120.00012 * 179.97438 * 17 16 15 20 20 C 1.39571 * 120.14594 * 179.97438 * 19 17 16 21 21 C 1.37956 * 119.85308 * 180.02562 * 20 19 17 22 22 C 1.38361 * 120.14496 * 0.02562 * 21 20 19 23 23 C 1.50706 * 119.85111 * 179.97438 * 22 21 20 24 24 F 1.39903 * 109.46746 * 90.00273 * 23 22 21 25 25 C 1.38356 * 120.29417 * 0.23278 * 22 21 20 26 26 C 1.37960 * 120.14290 * 359.48864 * 25 22 21 27 27 H 0.97006 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47265 * 60.00074 * 10 9 7 29 29 H 1.09005 * 109.47155 * 300.00059 * 10 9 7 30 30 H 0.96997 * 119.99553 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.47273 * 59.99927 * 14 13 11 32 32 H 1.08992 * 109.47518 * 299.99625 * 14 13 11 33 33 H 1.08996 * 109.46625 * 60.00276 * 15 14 13 34 34 H 1.08992 * 109.47107 * 300.00201 * 15 14 13 35 35 H 0.96997 * 120.00523 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.07690 * 0.02562 * 20 19 17 37 37 H 1.08001 * 119.92660 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.46646 * 209.99569 * 23 22 21 39 39 H 1.09000 * 109.47248 * 330.00286 * 23 22 21 40 40 H 1.07994 * 119.92715 * 179.74290 * 25 22 21 41 41 H 1.07998 * 120.07313 * 180.24959 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0008 14 6 2.3303 -7.7150 -0.0008 15 6 3.5025 -8.6985 -0.0009 16 7 2.9886 -10.0705 -0.0004 17 6 3.8454 -11.1109 0.0002 18 8 5.0444 -10.9109 0.0006 19 6 3.3270 -12.4954 0.0013 20 6 4.2115 -13.5751 0.0013 21 6 3.7212 -14.8646 0.0018 22 6 2.3558 -15.0888 0.0018 23 6 1.8274 -16.5001 0.0018 24 9 1.6639 -16.9368 1.3209 25 6 1.4736 -14.0230 -0.0036 26 6 1.9508 -12.7286 0.0017 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8894 29 1 3.1244 -3.7313 -0.8906 30 1 3.8009 -6.1835 -0.0004 31 1 1.7220 -7.8752 -0.8910 32 1 1.7215 -7.8750 0.8889 33 1 4.1110 -8.5384 0.8890 34 1 4.1110 -8.5383 -0.8909 35 1 2.0319 -10.2301 0.0004 36 1 5.2775 -13.4015 0.0009 37 1 4.4045 -15.7009 0.0023 38 1 0.8665 -16.5282 -0.5119 39 1 2.5335 -17.1525 -0.5119 40 1 0.4091 -14.2048 -0.0077 41 1 1.2611 -11.8975 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574894082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -130.114469 kcal Electronic energy + Delta-G solvation = -24384.297762 eV Core-core repulsion = 20303.319694 eV Total energy + Delta-G solvation = -4080.978068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.60713 -41.37732 -40.62048 -39.49860 -37.03365 -35.18521 -34.58131 -33.50666 -32.12981 -31.54401 -29.45231 -27.76228 -27.50495 -24.31570 -23.78976 -23.15333 -21.97498 -21.33273 -19.90152 -19.20462 -17.96645 -17.54524 -17.18534 -17.12726 -17.02877 -16.87437 -16.78268 -16.58256 -16.31719 -15.91094 -15.69025 -15.30173 -15.24842 -14.99654 -14.70857 -14.46664 -14.39725 -13.97079 -13.78344 -13.49892 -13.15596 -12.93781 -12.93259 -12.84477 -12.59061 -12.31180 -12.12247 -11.84356 -11.71441 -11.27397 -11.15593 -10.99880 -10.40381 -10.27285 -10.19067 -10.04775 -9.97708 -8.65953 -8.34773 -6.12344 -0.35015 0.31983 1.24536 1.41644 1.44663 1.56382 1.58200 1.68243 1.81632 2.27231 2.50362 2.73571 2.99833 3.31826 3.39852 3.54898 3.67299 3.74570 3.90355 3.98438 3.99880 4.11251 4.12809 4.31462 4.34367 4.36235 4.51749 4.53045 4.65027 4.78766 4.79308 4.82749 4.96530 5.14005 5.18523 5.26133 5.35791 5.38852 5.42953 5.78559 6.20429 6.33223 6.44076 7.02135 7.07212 7.19015 8.74636 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.037488 B = 0.001383 C = 0.001341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.730935 B =20234.811186 C =20872.511756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.131 4.131 11 C 0.538 3.462 12 O -0.562 6.562 13 N -0.712 5.712 14 C 0.115 3.885 15 C 0.119 3.881 16 N -0.710 5.710 17 C 0.558 3.442 18 O -0.575 6.575 19 C -0.143 4.143 20 C -0.077 4.077 21 C -0.109 4.109 22 C -0.115 4.115 23 C 0.098 3.902 24 F -0.229 7.229 25 C -0.107 4.107 26 C -0.085 4.085 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.419 0.581 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.416 0.584 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.157 0.843 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.444 -33.947 -1.656 34.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.009 4.009 15 C -0.005 4.005 16 N -0.364 5.364 17 C 0.347 3.653 18 O -0.455 6.455 19 C -0.146 4.146 20 C -0.096 4.096 21 C -0.127 4.127 22 C -0.116 4.116 23 C 0.044 3.956 24 F -0.210 7.210 25 C -0.125 4.125 26 C -0.104 4.104 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.256 0.744 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.175 0.825 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.147 -34.048 -1.628 34.636 hybrid contribution 1.640 1.467 0.126 2.204 sum 7.788 -32.581 -1.502 33.532 Atomic orbital electron populations 1.70180 1.07939 1.28539 1.48081 1.26094 0.95936 1.03238 0.93739 0.84923 0.78628 0.76451 0.78056 1.18086 1.19964 1.19973 1.23248 0.95379 0.92054 1.58759 0.89910 1.85540 1.10469 0.99191 1.97059 1.23380 1.03644 0.94231 1.07008 1.19999 0.86127 0.86533 0.74985 1.90701 1.17251 1.86024 1.49967 1.45502 1.10616 1.04652 1.75930 1.21380 0.96057 0.80102 1.03396 1.21343 0.95579 0.79876 1.03747 1.45592 1.10954 1.05121 1.74701 1.18550 0.85664 0.85609 0.75486 1.90774 1.16767 1.86453 1.51549 1.19977 0.95205 0.92210 1.07211 1.21366 1.00339 0.91946 0.95908 1.21306 0.95395 0.97012 0.98977 1.20786 0.94195 0.96871 0.99767 1.21139 1.04730 0.90744 0.78994 1.92795 1.97290 1.90717 1.40201 1.21382 1.01338 0.91399 0.98406 1.21596 0.93474 0.98727 0.96601 0.91991 0.87069 0.87047 0.74417 0.90678 0.90760 0.90315 0.90196 0.74555 0.85137 0.83098 0.87163 0.87480 0.82490 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.24 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.14 20.57 -56.49 -1.16 -9.30 16 10 C -0.13 -4.98 6.16 71.23 0.44 -4.54 16 11 C 0.54 18.52 7.85 87.65 0.69 19.21 16 12 O -0.56 -24.47 15.86 -3.06 -0.05 -24.52 16 13 N -0.71 -15.89 5.56 -463.06 -2.57 -18.46 16 14 C 0.12 2.07 5.79 86.38 0.50 2.57 16 15 C 0.12 1.78 5.79 86.38 0.50 2.28 16 16 N -0.71 -9.94 5.51 -465.96 -2.57 -12.50 16 17 C 0.56 10.66 7.77 86.79 0.67 11.33 16 18 O -0.57 -15.42 16.35 -3.88 -0.06 -15.49 16 19 C -0.14 -2.17 5.87 -20.09 -0.12 -2.29 16 20 C -0.08 -1.14 9.60 22.52 0.22 -0.92 16 21 C -0.11 -1.14 9.68 22.23 0.22 -0.93 16 22 C -0.12 -1.02 5.60 -19.80 -0.11 -1.14 16 23 C 0.10 0.51 7.67 71.24 0.55 1.05 16 24 F -0.23 -2.89 17.34 44.97 0.78 -2.11 16 25 C -0.11 -0.87 9.68 22.23 0.22 -0.66 16 26 C -0.09 -0.84 9.54 22.53 0.21 -0.63 16 27 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 28 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.42 6.69 8.47 -92.71 -0.79 5.91 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.42 3.60 6.51 -92.71 -0.60 2.99 16 36 H 0.13 2.09 7.65 -2.91 -0.02 2.07 16 37 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.11 0.07 8.08 -2.39 -0.02 0.05 16 39 H 0.11 0.11 8.08 -2.39 -0.02 0.09 16 40 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.15 0.71 6.41 -2.91 -0.02 0.69 16 Total: -1.00 -84.00 377.55 1.47 -82.53 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.30 Total: 13.26 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 5.09 Total: -3.54 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -4.85 Total: -86.09 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.11 Total: -40.01 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -84.00 1.47 -82.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574894082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.582 kcal (2) G-P(sol) polarization free energy of solvation -84.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds