Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86790 * 120.00581 * 2 1 4 4 H 1.48503 * 109.47494 * 274.66413 * 3 2 1 5 5 H 1.48497 * 109.47112 * 34.66679 * 3 2 1 6 6 H 1.48500 * 109.47249 * 154.66236 * 3 2 1 7 7 C 1.39953 * 119.99398 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99703 * 162.22772 * 7 2 1 9 9 C 1.41391 * 120.00145 * 342.23491 * 7 2 1 10 10 C 1.40714 * 120.24613 * 155.28802 * 9 7 2 11 11 C 1.37620 * 119.74662 * 180.02562 * 10 9 7 12 12 C 1.38628 * 120.25035 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75190 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46790 * 89.99711 * 13 12 11 15 15 C 1.35768 * 119.98434 * 270.01965 * 14 13 12 16 16 O 1.34858 * 119.18578 * 359.97438 * 15 14 13 17 17 N 1.31574 * 121.63275 * 180.02562 * 15 14 13 18 18 C 1.33011 * 121.53299 * 359.68599 * 17 15 14 19 19 C 1.38574 * 119.78540 * 0.57219 * 18 17 15 20 20 C 1.48236 * 120.76543 * 179.73985 * 19 18 17 21 21 N 1.33742 * 126.32244 * 179.40985 * 20 19 18 22 22 N 1.28569 * 109.84609 * 180.26617 * 21 20 19 23 23 N 1.28923 * 109.74169 * 359.97438 * 22 21 20 24 24 H 0.97001 * 126.42521 * 180.02562 * 23 22 21 25 25 N 1.32073 * 126.31627 * 359.72026 * 20 19 18 26 26 C 1.35019 * 119.98640 * 90.00438 * 14 13 12 27 27 O 1.21929 * 120.72634 * 359.97438 * 26 14 13 28 28 C 1.38641 * 120.49683 * 0.24620 * 12 11 10 29 29 C 1.37611 * 120.25084 * 359.45249 * 28 12 11 30 30 H 0.97009 * 119.99278 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.12492 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.87633 * 179.97438 * 11 10 9 33 33 H 1.08995 * 109.47162 * 329.99918 * 13 12 11 34 34 H 1.09005 * 109.46945 * 209.99364 * 13 12 11 35 35 H 0.96701 * 116.99972 * 179.97438 * 16 15 14 36 36 H 1.07999 * 120.10891 * 180.28945 * 18 17 15 37 37 H 1.08002 * 119.87163 * 179.70983 * 28 12 11 38 38 H 1.08005 * 120.12962 * 180.27246 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3914 2.1032 -1.3954 5 1 1.4927 2.6220 0.7963 6 1 3.5857 1.4134 0.5992 7 6 2.0079 -1.2121 0.0005 8 1 3.0492 -1.2346 -0.2849 9 6 1.3514 -2.4072 0.3747 10 6 1.8215 -3.6494 -0.0899 11 6 1.1743 -4.8062 0.2803 12 6 0.0630 -4.7508 1.1071 13 6 -0.6374 -6.0244 1.5050 14 7 -0.0455 -6.5414 2.7413 15 6 1.0023 -7.4028 2.6834 16 8 1.4846 -7.7718 1.4793 17 7 1.5583 -7.8874 3.7731 18 6 1.1237 -7.5512 4.9844 19 6 0.0537 -6.6802 5.1146 20 6 -0.4521 -6.2953 6.4538 21 7 -1.4647 -5.4595 6.7080 22 7 -1.6306 -5.3483 7.9781 23 7 -0.7668 -6.0794 8.5957 24 1 -0.6758 -6.1758 9.5566 25 7 0.0178 -6.7102 7.6163 26 6 -0.5420 -6.1608 3.9378 27 8 -1.4822 -5.3873 4.0046 28 6 -0.4123 -3.5320 1.5662 29 6 0.2227 -2.3630 1.2139 30 1 -0.4849 0.8402 0.0004 31 1 2.6864 -3.6948 -0.7352 32 1 1.5331 -5.7607 -0.0754 33 1 -0.5255 -6.7636 0.7118 34 1 -1.6962 -5.8217 1.6661 35 1 2.2314 -8.3861 1.4750 36 1 1.6001 -7.9592 5.8635 37 1 -1.2817 -3.5002 2.2062 38 1 -0.1466 -1.4150 1.5763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581859507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = 91.200128 kcal Electronic energy + Delta-G solvation = -28427.499569 eV Core-core repulsion = 24272.887183 eV Total energy + Delta-G solvation = -4154.612386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.16603 -42.90968 -39.74380 -39.49966 -37.87969 -36.74852 -35.49111 -34.65727 -33.96306 -32.31628 -31.19431 -31.16030 -29.08147 -26.64374 -25.91060 -25.45700 -24.39511 -23.17232 -22.86836 -21.84860 -20.49880 -20.12568 -19.27509 -19.20487 -18.13963 -17.92871 -17.42789 -17.12754 -16.86755 -16.15551 -15.84229 -15.73753 -15.59477 -15.46784 -15.21934 -15.03449 -14.38835 -14.30337 -13.81952 -13.53229 -13.35224 -13.17317 -13.16081 -12.99708 -12.72842 -12.56958 -12.35371 -12.16342 -11.95114 -11.80197 -11.73031 -11.57828 -11.32575 -11.20806 -11.03173 -10.95266 -9.40784 -9.32967 -9.29345 -8.69552 -6.40104 -0.71257 0.01523 0.59195 0.78998 1.05955 1.14222 1.27622 1.32173 1.35242 1.47339 1.52049 2.16505 2.33914 2.56465 2.69675 2.73271 3.19057 3.30320 3.46857 3.71664 4.00991 4.19432 4.25478 4.33376 4.49893 4.51687 4.59152 4.68859 4.69569 5.00274 5.03964 5.11070 5.30236 5.39403 5.44073 5.67635 5.77160 5.89668 6.06743 6.12512 6.18795 6.33395 6.66481 6.72591 6.76235 6.88441 6.99142 7.16395 8.26964 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.003345 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.157387 B = 8369.237929 C = 9840.144426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.081 0.919 9 C 0.089 3.911 10 C -0.246 4.246 11 C -0.054 4.054 12 C -0.241 4.241 13 C 0.160 3.840 14 N -0.503 5.503 15 C 0.624 3.376 16 O -0.434 6.434 17 N -0.587 5.587 18 C 0.278 3.722 19 C -0.280 4.280 20 C 0.278 3.722 21 N -0.321 5.321 22 N -0.007 5.007 23 N -0.272 5.272 24 H 0.488 0.512 25 N -0.297 5.297 26 C 0.541 3.459 27 O -0.530 6.530 28 C -0.080 4.080 29 C -0.201 4.201 30 H 0.288 0.712 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.463 0.537 36 H 0.211 0.789 37 H 0.085 0.915 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -17.953 9.407 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.086 3.914 10 C -0.265 4.265 11 C -0.072 4.072 12 C -0.243 4.243 13 C 0.041 3.959 14 N -0.229 5.229 15 C 0.326 3.674 16 O -0.234 6.234 17 N -0.328 5.328 18 C 0.128 3.872 19 C -0.293 4.293 20 C -0.003 4.003 21 N -0.198 5.198 22 N -0.003 5.003 23 N -0.124 5.124 24 H 0.347 0.653 25 N -0.143 5.143 26 C 0.340 3.660 27 O -0.406 6.406 28 C -0.099 4.099 29 C -0.220 4.220 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.329 0.671 36 H 0.228 0.772 37 H 0.103 0.897 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.595 -17.218 9.452 19.968 hybrid contribution 0.010 1.259 0.462 1.341 sum 3.605 -15.959 9.915 19.131 Atomic orbital electron populations 1.69902 1.09246 1.30662 1.34866 1.26847 0.95444 1.04845 0.91143 0.85199 0.79186 0.75826 0.79588 1.18194 1.19462 1.18031 1.19938 0.98525 0.92521 1.41547 0.90056 1.18015 0.91205 0.93680 0.88452 1.21220 1.04792 0.92894 1.07606 1.20777 0.93459 0.97590 0.95371 1.19316 1.02610 0.92825 1.09508 1.20679 0.97299 0.94601 0.83369 1.46965 1.27588 1.37313 1.11008 1.20533 0.80079 0.79913 0.86830 1.84303 1.53263 1.64301 1.21509 1.68706 1.33448 1.33788 0.96893 1.23186 0.85305 0.83514 0.95150 1.18664 1.08366 1.14962 0.87267 1.22766 0.91466 0.92939 0.93089 1.75830 1.19052 1.19932 1.04947 1.78350 1.11040 1.10136 1.00783 1.50969 1.19901 1.28770 1.12738 0.65338 1.78692 1.18210 1.21768 0.95652 1.16957 0.84401 0.82280 0.82400 1.90998 1.29158 1.35433 1.84977 1.20776 0.97937 0.93367 0.97832 1.21207 1.00981 0.96676 1.03184 0.90128 0.87633 0.84357 0.85067 0.89543 0.67067 0.77209 0.89680 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.58 10.97 21.83 0.24 -44.34 16 2 C 0.03 1.69 5.14 85.26 0.44 2.13 16 3 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -26.96 9.05 23.46 0.21 -26.75 16 8 H 0.08 4.19 7.91 -2.91 -0.02 4.16 16 9 C 0.09 4.85 5.57 -21.29 -0.12 4.73 16 10 C -0.25 -11.45 9.80 22.73 0.22 -11.23 16 11 C -0.05 -2.09 9.66 22.22 0.21 -1.88 16 12 C -0.24 -9.82 5.48 -19.67 -0.11 -9.93 16 13 C 0.16 5.04 5.25 85.63 0.45 5.49 16 14 N -0.50 -14.93 2.58 -770.14 -1.99 -16.92 16 15 C 0.62 13.35 8.60 179.72 1.55 14.90 16 16 O -0.43 -5.75 11.46 -81.25 -0.93 -6.68 16 17 N -0.59 -11.29 10.32 -312.14 -3.22 -14.51 16 18 C 0.28 5.83 10.92 84.59 0.92 6.75 16 19 C -0.28 -8.36 5.93 -19.67 -0.12 -8.47 16 20 C 0.28 8.72 7.91 137.32 1.09 9.81 16 21 N -0.32 -11.67 11.10 -52.36 -0.58 -12.25 16 22 N -0.01 -0.20 13.42 37.02 0.50 0.30 16 23 N -0.27 -5.41 8.44 37.02 0.31 -5.10 16 24 H 0.49 4.24 8.96 -340.34 -3.05 1.19 16 25 N -0.30 -7.16 12.61 -52.32 -0.66 -7.82 16 26 C 0.54 19.34 7.46 85.07 0.63 19.98 16 27 O -0.53 -23.52 14.92 -5.08 -0.08 -23.60 16 28 C -0.08 -4.00 9.67 22.22 0.21 -3.79 16 29 C -0.20 -11.21 8.70 22.73 0.20 -11.01 16 30 H 0.29 14.20 8.30 -92.70 -0.77 13.43 16 31 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.14 4.11 7.31 -2.91 -0.02 4.09 16 33 H 0.13 3.10 7.29 -2.39 -0.02 3.09 16 34 H 0.09 2.96 7.39 -2.38 -0.02 2.94 16 35 H 0.46 0.70 9.09 -74.06 -0.67 0.03 16 36 H 0.21 2.92 7.90 -2.91 -0.02 2.90 16 37 H 0.08 4.37 7.61 -2.91 -0.02 4.35 16 38 H 0.09 5.38 6.18 -2.91 -0.02 5.36 16 Total: -1.00 -79.90 341.85 -1.12 -81.01 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -2.54 Total: 18.25 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.80 Total: -9.28 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.40 Total: -100.63 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.01 Total: -30.28 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -79.90 -1.12 -81.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.213 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds