Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86792 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47385 * 240.00003 * 3 2 1 5 5 H 1.48504 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47345 * 119.99839 * 3 2 1 7 7 C 1.38800 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99917 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00124 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99997 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47273 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99815 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00093 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99693 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47118 * 180.02562 * 14 13 11 16 16 C 1.53495 * 114.21060 * 185.00115 * 15 14 13 17 17 N 1.47069 * 87.98587 * 220.15085 * 16 15 14 18 18 C 1.34784 * 136.05474 * 207.08488 * 17 16 15 19 19 O 1.21274 * 119.99897 * 359.72586 * 18 17 16 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 16 21 21 N 1.46506 * 109.46874 * 180.02562 * 20 18 17 22 22 C 1.34596 * 126.43736 * 125.00225 * 21 20 18 23 23 N 1.31075 * 106.67478 * 179.97438 * 22 21 20 24 24 N 1.28837 * 107.99153 * 0.02562 * 23 22 21 25 25 N 1.28741 * 109.40052 * 359.72729 * 24 23 22 26 26 C 1.47068 * 87.88651 * 27.34115 * 17 16 15 27 27 H 0.96996 * 119.99603 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47308 * 59.99940 * 10 9 7 29 29 H 1.09005 * 109.47270 * 300.00340 * 10 9 7 30 30 H 0.96994 * 119.99792 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47359 * 60.00228 * 14 13 11 32 32 H 1.09005 * 109.47599 * 300.00126 * 14 13 11 33 33 H 1.09005 * 113.28452 * 318.07032 * 15 14 13 34 34 H 1.08994 * 113.47293 * 105.36921 * 16 15 14 35 35 H 1.08999 * 113.52128 * 334.93541 * 16 15 14 36 36 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 37 37 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 38 38 H 1.07996 * 126.66140 * 359.96514 * 22 21 20 39 39 H 1.08999 * 113.46642 * 87.43975 * 26 17 16 40 40 H 1.09001 * 113.46436 * 217.87945 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3432 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 6 3.5022 -8.6986 -0.0020 16 6 3.0879 -10.1715 -0.1241 17 7 4.1287 -10.4924 0.8642 18 6 4.8935 -11.5634 1.1553 19 8 4.7812 -12.5826 0.5077 20 6 5.8840 -11.4962 2.2890 21 7 6.5862 -12.7771 2.4005 22 6 7.9192 -12.9626 2.3795 23 7 8.1217 -14.2512 2.5074 24 7 6.9731 -14.8272 2.6015 25 7 6.0431 -13.9388 2.5427 26 6 3.9632 -9.1325 1.3993 27 1 -0.4849 0.8400 0.0004 28 1 3.1244 -3.7314 0.8894 29 1 3.1245 -3.7314 -0.8905 30 1 3.8008 -6.1836 -0.0015 31 1 1.7212 -7.8750 -0.8916 32 1 1.7220 -7.8754 0.8884 33 1 4.3111 -8.4050 -0.6711 34 1 3.2794 -10.5961 -1.1095 35 1 2.0765 -10.3698 0.2308 36 1 6.6054 -10.7025 2.0947 37 1 5.3569 -11.2881 3.2202 38 1 8.6750 -12.1980 2.2769 39 1 3.1825 -9.0559 2.1561 40 1 4.9004 -8.6719 1.7116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582132072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = 100.872536 kcal Electronic energy + Delta-G solvation = -25057.474593 eV Core-core repulsion = 21038.725585 eV Total energy + Delta-G solvation = -4018.749008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.63066 -41.26421 -39.41963 -38.67145 -35.93332 -34.72777 -32.92529 -32.49886 -31.73930 -30.09135 -28.86189 -26.75573 -26.07166 -25.46313 -24.31087 -23.72936 -21.62229 -20.61692 -19.85036 -18.47847 -18.27120 -17.91627 -17.21738 -16.88757 -16.64448 -16.37591 -16.06330 -15.95834 -15.38373 -14.91916 -14.86395 -14.23802 -14.15239 -13.77225 -13.66838 -13.30661 -13.23410 -13.05303 -12.83910 -12.60554 -12.57514 -12.00959 -11.91188 -11.67863 -11.58912 -11.28996 -11.12120 -11.09885 -10.90032 -10.83479 -10.52183 -9.90283 -9.59357 -9.48087 -9.14622 -9.07689 -8.32984 -6.58513 -6.28625 -4.00113 0.71797 1.21005 1.69566 1.84256 2.05050 2.86216 2.94515 3.17737 3.19526 3.23503 3.26224 3.46469 3.59010 3.69794 3.70925 4.00372 4.13438 4.17973 4.24487 4.34388 4.58266 4.64762 4.72401 4.90237 4.92295 4.99862 5.04252 5.06677 5.18031 5.25633 5.41285 5.52250 5.53304 5.69532 5.77506 6.02502 6.39910 6.85074 7.24097 7.50415 7.52597 8.16050 8.27596 8.45030 9.16659 10.78691 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029174 B = 0.001508 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.513505 B =18563.704679 C =19294.109428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.740 5.740 14 C 0.133 3.867 15 C -0.134 4.134 16 C 0.118 3.882 17 N -0.646 5.646 18 C 0.531 3.469 19 O -0.508 6.508 20 C 0.103 3.897 21 N -0.303 5.303 22 C 0.162 3.838 23 N -0.305 5.305 24 N -0.076 5.076 25 N -0.064 5.064 26 C 0.098 3.902 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.087 -18.817 4.471 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.395 5.395 14 C 0.008 3.992 15 C -0.154 4.154 16 C -0.004 4.004 17 N -0.383 5.383 18 C 0.318 3.682 19 O -0.381 6.381 20 C -0.022 4.022 21 N -0.106 5.106 22 C -0.137 4.137 23 N -0.152 5.152 24 N -0.070 5.070 25 N -0.050 5.050 26 C -0.025 4.025 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.253 0.747 39 H 0.117 0.883 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.588 -21.184 4.329 25.019 hybrid contribution 2.643 2.550 -0.081 3.674 sum 15.232 -18.634 4.248 24.439 Atomic orbital electron populations 1.70003 1.05961 1.27653 1.46582 1.24990 0.95027 0.99039 0.94450 0.86224 0.79250 0.81234 0.78791 1.19929 1.20778 1.19945 1.22817 0.94854 0.91638 1.59317 0.90957 1.85425 1.04794 0.96369 1.96741 1.23532 1.06677 0.95309 1.04941 1.20333 0.86499 0.86293 0.75056 1.90721 1.15381 1.85567 1.47192 1.45963 1.09981 1.05185 1.78386 1.21130 0.94392 0.80349 1.03338 1.23280 0.99861 0.94609 0.97616 1.23012 0.92049 0.91605 0.93776 1.49451 1.38870 1.13457 1.36503 1.19606 0.81831 0.82053 0.84754 1.90884 1.67904 1.28686 1.50675 1.21878 0.97424 0.81411 1.01533 1.48171 1.06637 1.08261 1.47507 1.27784 0.85767 0.97580 1.02538 1.75017 1.19089 1.03274 1.17852 1.78703 0.91899 1.21221 1.15194 1.79041 1.22954 0.87423 1.15619 1.23444 1.02499 0.79220 0.97293 0.92065 0.89189 0.89190 0.76747 0.90575 0.90815 0.86657 0.89548 0.88576 0.83809 0.84529 0.74725 0.88315 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.25 13.22 55.49 0.73 -24.52 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -14.59 9.50 30.94 0.29 -14.30 16 8 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.74 6.16 36.01 0.22 -2.52 16 11 C 0.53 8.36 7.85 -10.98 -0.09 8.28 16 12 O -0.51 -10.40 15.86 5.56 0.09 -10.31 16 13 N -0.74 -6.86 5.56 -60.30 -0.33 -7.20 16 14 C 0.13 0.92 5.59 -4.05 -0.02 0.90 16 15 C -0.13 -0.45 4.11 -89.97 -0.37 -0.82 16 16 C 0.12 0.55 8.19 -8.50 -0.07 0.48 16 17 N -0.65 -3.01 3.69 -185.02 -0.68 -3.70 16 18 C 0.53 3.58 8.10 -10.98 -0.09 3.49 16 19 O -0.51 -6.23 16.48 5.56 0.09 -6.14 16 20 C 0.10 0.27 6.79 -5.19 -0.04 0.23 16 21 N -0.30 -2.07 3.19 -63.73 -0.20 -2.28 16 22 C 0.16 0.91 12.79 -90.39 -1.16 -0.25 16 23 N -0.31 -3.16 12.36 29.59 0.37 -2.79 16 24 N -0.08 -0.96 13.43 60.35 0.81 -0.15 16 25 N -0.06 -0.73 12.30 60.35 0.74 0.01 16 26 C 0.10 0.20 8.00 -8.36 -0.07 0.13 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 29 H 0.09 1.47 8.14 -51.91 -0.42 1.05 16 30 H 0.40 2.41 8.47 -40.82 -0.35 2.07 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.55 7.81 -51.93 -0.41 0.14 16 33 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.14 -0.30 8.08 -51.93 -0.42 -0.72 16 37 H 0.14 0.05 8.14 -51.93 -0.42 -0.38 16 38 H 0.24 -0.11 8.06 -52.49 -0.42 -0.53 16 39 H 0.10 0.18 7.88 -51.93 -0.41 -0.23 16 40 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -42.17 371.61 -6.43 -48.59 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -4.93 Total: -6.43 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.48 Total: -2.43 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 1.43 Total: -40.62 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.18 Total: -16.45 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -42.17 -6.43 -48.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582132072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.466 kcal (2) G-P(sol) polarization free energy of solvation -42.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds