Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33641 * 125.67137 * 2 1 4 4 C 1.34560 * 110.87287 * 180.02562 * 3 2 1 5 5 C 1.47939 * 125.57885 * 180.02562 * 4 3 2 6 6 N 1.34195 * 126.70572 * 180.02562 * 5 4 3 7 7 N 1.28974 * 107.25425 * 179.97438 * 6 5 4 8 8 N 1.28723 * 108.99407 * 0.02562 * 7 6 5 9 9 H 0.97002 * 125.32158 * 179.97438 * 8 7 6 10 10 N 1.28870 * 109.35919 * 359.74297 * 8 7 6 11 11 C 1.35550 * 108.84927 * 359.71416 * 4 3 2 12 12 C 1.36591 * 125.67282 * 180.02562 * 2 1 3 13 13 C 1.47384 * 127.11595 * 359.97438 * 12 2 1 14 14 O 1.21605 * 119.99955 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00063 * 180.02562 * 13 12 2 16 16 C 1.39174 * 120.00373 * 183.70864 * 15 13 12 17 17 C 1.39707 * 119.57205 * 338.99411 * 16 15 13 18 18 C 1.38643 * 119.48798 * 179.97438 * 17 16 15 19 19 C 1.38351 * 118.67906 * 0.02562 * 18 17 16 20 20 C 1.40571 * 119.12980 * 359.97438 * 19 18 17 21 21 C 1.41338 * 119.78498 * 180.02562 * 20 19 18 22 22 H 1.07994 * 119.99985 * 5.13460 * 21 20 19 23 23 C 1.40026 * 119.99815 * 185.13164 * 21 20 19 24 24 N 1.30750 * 119.99895 * 184.82802 * 23 21 20 25 25 Si 1.86801 * 120.00339 * 4.82618 * 23 21 20 26 26 H 1.48502 * 109.47064 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46895 * 300.00213 * 25 23 21 28 28 H 1.48492 * 109.46973 * 59.99903 * 25 23 21 29 29 N 1.31919 * 119.58160 * 159.24965 * 16 15 13 30 30 H 1.08994 * 109.47219 * 269.97325 * 1 2 3 31 31 H 1.09001 * 109.46822 * 29.97883 * 1 2 3 32 32 H 1.09003 * 109.46511 * 149.97387 * 1 2 3 33 33 H 1.08004 * 127.07873 * 180.26624 * 11 4 3 34 34 H 0.97004 * 119.99809 * 3.70254 * 15 13 12 35 35 H 1.07998 * 120.25595 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.65635 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.43466 * 180.02562 * 19 18 17 38 38 H 0.96995 * 119.99555 * 354.98480 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2864 1.0857 0.0000 4 6 3.5874 0.7420 -0.0006 5 6 4.7269 1.6854 -0.0002 6 7 6.0308 1.3682 -0.0012 7 7 6.6937 2.4746 -0.0010 8 7 5.8649 3.4596 0.0007 9 1 6.1093 4.3983 0.0016 10 7 4.6595 3.0036 -0.0039 11 6 3.6831 -0.6101 0.0054 12 6 2.3036 -1.1096 -0.0005 13 6 1.8675 -2.5175 -0.0006 14 8 0.6817 -2.7866 0.0003 15 7 2.7831 -3.5066 -0.0006 16 6 2.3732 -4.8343 -0.0787 17 6 1.0668 -5.1748 0.2806 18 6 0.6601 -6.4979 0.2017 19 6 1.5682 -7.4468 -0.2333 20 6 2.8685 -7.0410 -0.5804 21 6 3.8072 -7.9987 -1.0269 22 1 3.5021 -9.0233 -1.1799 23 6 5.1327 -7.6189 -1.2710 24 7 5.9777 -8.4809 -1.7734 25 14 5.6937 -5.8808 -0.8789 26 1 7.1301 -5.7342 -1.2260 27 1 4.8917 -4.9119 -1.6684 28 1 5.5054 -5.6149 0.5698 29 7 3.2247 -5.7558 -0.4860 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8898 -0.5143 33 1 4.5886 -1.1988 0.0107 34 1 3.7278 -3.2930 0.0537 35 1 0.3787 -4.4132 0.6164 36 1 -0.3453 -6.7823 0.4751 37 1 1.2815 -8.4855 -0.3059 38 1 5.7073 -9.4024 -1.9092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592503865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = 141.058031 kcal Electronic energy + Delta-G solvation = -27809.891323 eV Core-core repulsion = 23657.440938 eV Total energy + Delta-G solvation = -4152.450385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.89924 -42.92713 -40.02396 -38.09497 -34.98805 -34.65934 -33.99465 -33.64367 -33.21834 -31.81339 -31.09921 -29.60836 -27.72952 -25.48250 -25.07067 -24.38029 -23.52766 -22.17500 -21.73546 -20.65599 -19.79539 -19.54884 -18.45045 -17.92590 -17.67256 -16.79245 -16.65236 -16.12826 -15.34974 -15.10386 -14.92712 -14.52027 -14.32507 -13.91206 -13.62835 -13.40503 -13.32748 -13.22143 -12.87860 -12.77316 -12.73795 -12.22514 -12.10427 -11.86562 -11.85960 -11.57508 -11.54333 -11.20441 -10.83721 -10.31626 -10.05496 -10.01418 -9.66106 -9.27719 -9.14574 -8.74065 -8.55277 -7.73402 -7.47784 -7.20952 -4.77307 0.42523 0.85463 1.23164 1.63167 2.08885 2.25590 2.49656 2.65003 3.15473 3.36248 3.43644 3.56635 3.67426 3.92603 3.99728 4.34645 4.40980 4.53670 4.59596 4.65786 4.90090 5.02455 5.20638 5.29853 5.36410 5.45586 5.52757 5.81644 5.86375 5.91821 5.93739 6.08706 6.44106 6.52042 6.56260 6.61888 7.11924 7.18783 7.44233 7.55773 7.62607 7.68308 7.75958 8.11482 8.26699 8.41937 8.65294 9.40282 10.00945 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.003305 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.157486 B = 8469.332574 C =10656.950923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.111 3.889 3 O -0.157 6.157 4 C 0.046 3.954 5 C 0.256 3.744 6 N -0.248 5.248 7 N -0.039 5.039 8 N -0.224 5.224 9 H 0.478 0.522 10 N -0.283 5.283 11 C -0.102 4.102 12 C -0.241 4.241 13 C 0.596 3.404 14 O -0.512 6.512 15 N -0.644 5.644 16 C 0.386 3.614 17 C -0.312 4.312 18 C -0.036 4.036 19 C -0.276 4.276 20 C 0.273 3.727 21 C -0.475 4.475 22 H 0.083 0.917 23 C 0.043 3.957 24 N -0.805 5.805 25 Si 1.150 2.850 26 H -0.331 1.331 27 H -0.278 1.278 28 H -0.293 1.293 29 N -0.598 5.598 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.174 0.826 34 H 0.408 0.592 35 H 0.147 0.853 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 23.369 4.040 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.056 3.944 3 O -0.052 6.052 4 C -0.005 4.005 5 C -0.024 4.024 6 N -0.122 5.122 7 N -0.034 5.034 8 N -0.070 5.070 9 H 0.333 0.667 10 N -0.135 5.135 11 C -0.124 4.124 12 C -0.245 4.245 13 C 0.384 3.616 14 O -0.390 6.390 15 N -0.287 5.287 16 C 0.155 3.845 17 C -0.337 4.337 18 C -0.060 4.060 19 C -0.298 4.298 20 C 0.149 3.851 21 C -0.508 4.508 22 H 0.101 0.899 23 C -0.178 4.178 24 N -0.427 5.427 25 Si 0.986 3.014 26 H -0.264 1.264 27 H -0.206 1.206 28 H -0.222 1.222 29 N -0.323 5.323 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.192 0.808 34 H 0.243 0.757 35 H 0.164 0.836 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.787 24.764 3.658 25.096 hybrid contribution -1.739 -1.078 0.228 2.058 sum -3.525 23.686 3.886 24.261 Atomic orbital electron populations 1.20767 0.82658 1.05707 1.05001 1.23011 0.94101 0.82191 0.95057 1.83744 1.15043 1.34814 1.71607 1.17382 0.79648 0.89725 1.13760 1.21836 0.90736 0.86746 1.03033 1.76226 1.01118 1.17463 1.17406 1.78999 1.19847 0.90173 1.14411 1.47718 1.00895 1.12685 1.45726 0.66696 1.75146 1.05195 1.11653 1.21509 1.23025 0.97669 0.92078 0.99665 1.21050 0.92573 0.94036 1.16891 1.16925 0.85390 0.83038 0.76265 1.90651 1.16341 1.82817 1.49171 1.42993 1.10598 1.04515 1.70638 1.18065 0.90789 0.82655 0.92981 1.21738 0.96984 0.97615 1.17355 1.20954 0.97520 0.92803 0.94738 1.21617 0.95689 0.98833 1.13666 1.18265 0.91522 0.87138 0.88197 1.20729 0.95097 0.96523 1.38403 0.89854 1.27781 0.92748 1.08193 0.89061 1.70651 1.38781 1.05767 1.27503 0.81908 0.70321 0.71749 0.77455 1.26444 1.20620 1.22162 1.66003 1.35732 1.02386 1.28205 0.88622 0.89985 0.86483 0.80828 0.75684 0.83604 0.87562 0.87688 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.88 36.01 0.36 -0.40 16 2 C 0.11 1.29 7.37 -34.90 -0.26 1.03 16 3 O -0.16 -1.83 10.54 6.74 0.07 -1.76 16 4 C 0.05 0.55 7.22 -36.57 -0.26 0.29 16 5 C 0.26 2.95 8.20 -156.25 -1.28 1.67 16 6 N -0.25 -2.93 12.52 32.09 0.40 -2.53 16 7 N -0.04 -0.37 13.46 60.35 0.81 0.44 16 8 N -0.22 -1.47 7.90 60.35 0.48 -1.00 16 9 H 0.48 0.66 8.96 -340.33 -3.05 -2.39 16 10 N -0.28 -2.72 12.41 32.10 0.40 -2.33 16 11 C -0.10 -1.25 10.51 -37.12 -0.39 -1.64 16 12 C -0.24 -3.26 6.30 -103.35 -0.65 -3.91 16 13 C 0.60 9.99 7.71 -12.54 -0.10 9.90 16 14 O -0.51 -9.30 11.48 5.27 0.06 -9.24 16 15 N -0.64 -12.13 5.40 -12.39 -0.07 -12.20 16 16 C 0.39 8.80 7.51 -155.04 -1.16 7.64 16 17 C -0.31 -6.88 8.90 -38.88 -0.35 -7.23 16 18 C -0.04 -0.78 10.15 -39.39 -0.40 -1.17 16 19 C -0.28 -6.54 9.83 -38.66 -0.38 -6.92 16 20 C 0.27 7.17 6.40 -85.00 -0.54 6.62 16 21 C -0.48 -12.98 9.57 -37.73 -0.36 -13.34 16 22 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 23 C 0.04 1.18 5.52 -17.34 -0.10 1.09 16 24 N -0.81 -22.02 13.65 55.55 0.76 -21.26 16 25 Si 1.15 27.97 25.61 -169.99 -4.35 23.61 16 26 H -0.33 -7.98 7.11 56.52 0.40 -7.58 16 27 H -0.28 -6.65 6.61 56.52 0.37 -6.28 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 N -0.60 -15.15 4.54 -10.27 -0.05 -15.20 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.12 1.21 6.47 -51.93 -0.34 0.88 16 33 H 0.17 1.89 7.73 -52.48 -0.41 1.49 16 34 H 0.41 6.90 7.99 -40.82 -0.33 6.57 16 35 H 0.15 3.07 5.16 -52.93 -0.27 2.80 16 36 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.28 7.39 8.72 -40.82 -0.36 7.04 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -33.21 338.87 -7.94 -41.15 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.69 Total: 1.57 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -5.87 Total: -6.37 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 2.73 Total: -54.07 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.13 Total: -11.01 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.35 Total: 23.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.21 -7.94 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592503865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.211 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds