Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33641 * 125.67137 * 2 1 4 4 C 1.34560 * 110.87287 * 180.02562 * 3 2 1 5 5 C 1.47939 * 125.57885 * 180.02562 * 4 3 2 6 6 N 1.34195 * 126.70572 * 180.02562 * 5 4 3 7 7 N 1.28974 * 107.25425 * 179.97438 * 6 5 4 8 8 N 1.28723 * 108.99407 * 0.02562 * 7 6 5 9 9 H 0.97002 * 125.32158 * 179.97438 * 8 7 6 10 10 N 1.28870 * 109.35919 * 359.74297 * 8 7 6 11 11 C 1.35550 * 108.84927 * 359.71416 * 4 3 2 12 12 C 1.36591 * 125.67282 * 180.02562 * 2 1 3 13 13 C 1.47384 * 127.11595 * 359.97438 * 12 2 1 14 14 O 1.21605 * 119.99955 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00063 * 180.02562 * 13 12 2 16 16 C 1.39174 * 120.00373 * 183.70864 * 15 13 12 17 17 C 1.39707 * 119.57205 * 338.99411 * 16 15 13 18 18 C 1.38643 * 119.48798 * 179.97438 * 17 16 15 19 19 C 1.38351 * 118.67906 * 0.02562 * 18 17 16 20 20 C 1.40571 * 119.12980 * 359.97438 * 19 18 17 21 21 C 1.41338 * 119.78498 * 180.02562 * 20 19 18 22 22 H 1.07994 * 119.99985 * 5.13460 * 21 20 19 23 23 C 1.40026 * 119.99815 * 185.13164 * 21 20 19 24 24 N 1.30750 * 119.99895 * 184.82802 * 23 21 20 25 25 Si 1.86801 * 120.00339 * 4.82618 * 23 21 20 26 26 H 1.48502 * 109.47064 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46895 * 300.00213 * 25 23 21 28 28 H 1.48492 * 109.46973 * 59.99903 * 25 23 21 29 29 N 1.31919 * 119.58160 * 159.24965 * 16 15 13 30 30 H 1.08994 * 109.47219 * 269.97325 * 1 2 3 31 31 H 1.09001 * 109.46822 * 29.97883 * 1 2 3 32 32 H 1.09003 * 109.46511 * 149.97387 * 1 2 3 33 33 H 1.08004 * 127.07873 * 180.26624 * 11 4 3 34 34 H 0.97004 * 119.99809 * 3.70254 * 15 13 12 35 35 H 1.07998 * 120.25595 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.65635 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.43466 * 180.02562 * 19 18 17 38 38 H 0.96995 * 119.99555 * 354.98480 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2864 1.0857 0.0000 4 6 3.5874 0.7420 -0.0006 5 6 4.7269 1.6854 -0.0002 6 7 6.0308 1.3682 -0.0012 7 7 6.6937 2.4746 -0.0010 8 7 5.8649 3.4596 0.0007 9 1 6.1093 4.3983 0.0016 10 7 4.6595 3.0036 -0.0039 11 6 3.6831 -0.6101 0.0054 12 6 2.3036 -1.1096 -0.0005 13 6 1.8675 -2.5175 -0.0006 14 8 0.6817 -2.7866 0.0003 15 7 2.7831 -3.5066 -0.0006 16 6 2.3732 -4.8343 -0.0787 17 6 1.0668 -5.1748 0.2806 18 6 0.6601 -6.4979 0.2017 19 6 1.5682 -7.4468 -0.2333 20 6 2.8685 -7.0410 -0.5804 21 6 3.8072 -7.9987 -1.0269 22 1 3.5021 -9.0233 -1.1799 23 6 5.1327 -7.6189 -1.2710 24 7 5.9777 -8.4809 -1.7734 25 14 5.6937 -5.8808 -0.8789 26 1 7.1301 -5.7342 -1.2260 27 1 4.8917 -4.9119 -1.6684 28 1 5.5054 -5.6149 0.5698 29 7 3.2247 -5.7558 -0.4860 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8898 -0.5143 33 1 4.5886 -1.1988 0.0107 34 1 3.7278 -3.2930 0.0537 35 1 0.3787 -4.4132 0.6164 36 1 -0.3453 -6.7823 0.4751 37 1 1.2815 -8.4855 -0.3059 38 1 5.7073 -9.4024 -1.9092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592503865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = 118.534006 kcal Electronic energy + Delta-G solvation = -27810.868038 eV Core-core repulsion = 23657.440938 eV Total energy + Delta-G solvation = -4153.427100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.64082 -43.86860 -41.56698 -39.78601 -36.32012 -35.72909 -35.39283 -34.78493 -34.32759 -32.98343 -32.61422 -31.35068 -28.64290 -27.31223 -25.93097 -25.47968 -24.51921 -23.63932 -23.27820 -21.93459 -21.10792 -20.43807 -20.17934 -19.10468 -18.43258 -18.32656 -17.56121 -17.45067 -16.92163 -16.53845 -16.26121 -15.97000 -15.46765 -15.32484 -15.17238 -14.67113 -14.62449 -14.31943 -14.18268 -14.12884 -13.86584 -13.70631 -13.49758 -13.00353 -12.77825 -12.73051 -12.61245 -12.35138 -12.31294 -12.20600 -11.72337 -11.63768 -11.13098 -11.03913 -10.75900 -10.38270 -9.68331 -9.65369 -9.32891 -9.14977 -6.80216 -0.36910 0.01080 0.16355 0.71798 0.80502 0.89256 1.40700 1.42268 1.57724 1.71109 1.79676 2.08065 2.12972 2.46724 2.52163 2.69453 3.12661 3.41188 3.48606 3.57981 3.64132 4.06050 4.11162 4.17310 4.35665 4.44068 4.49488 4.64038 4.66791 4.70090 4.72582 4.82955 4.95385 5.20798 5.36669 5.41031 5.44533 5.49210 5.67889 5.76583 5.83999 5.95074 6.28277 6.42859 6.66555 6.92980 6.97259 7.51439 7.96938 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.003305 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.157486 B = 8469.332574 C =10656.950923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.132 3.868 3 O -0.153 6.153 4 C 0.045 3.955 5 C 0.241 3.759 6 N -0.274 5.274 7 N -0.043 5.043 8 N -0.190 5.190 9 H 0.499 0.501 10 N -0.282 5.282 11 C -0.105 4.105 12 C -0.265 4.265 13 C 0.601 3.399 14 O -0.527 6.527 15 N -0.647 5.647 16 C 0.374 3.626 17 C -0.304 4.304 18 C -0.027 4.027 19 C -0.291 4.291 20 C 0.257 3.743 21 C -0.508 4.508 22 H 0.069 0.931 23 C 0.015 3.985 24 N -0.831 5.831 25 Si 1.181 2.819 26 H -0.330 1.330 27 H -0.275 1.275 28 H -0.290 1.290 29 N -0.613 5.613 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.415 0.585 35 H 0.162 0.838 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 26.658 4.850 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 O -0.048 6.048 4 C -0.006 4.006 5 C -0.038 4.038 6 N -0.148 5.148 7 N -0.038 5.038 8 N -0.042 5.042 9 H 0.359 0.641 10 N -0.135 5.135 11 C -0.127 4.127 12 C -0.270 4.270 13 C 0.391 3.609 14 O -0.405 6.405 15 N -0.292 5.292 16 C 0.144 3.856 17 C -0.328 4.328 18 C -0.051 4.051 19 C -0.313 4.313 20 C 0.132 3.868 21 C -0.541 4.541 22 H 0.087 0.913 23 C -0.202 4.202 24 N -0.454 5.454 25 Si 1.014 2.986 26 H -0.264 1.264 27 H -0.203 1.203 28 H -0.218 1.218 29 N -0.339 5.339 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.199 0.801 34 H 0.252 0.748 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.323 28.102 4.474 28.649 hybrid contribution -1.463 -1.830 0.048 2.344 sum -4.787 26.272 4.521 27.084 Atomic orbital electron populations 1.20920 0.80575 1.06379 1.06282 1.23485 0.95057 0.81516 0.92273 1.83776 1.15012 1.34633 1.71376 1.17452 0.79868 0.89783 1.13522 1.21803 0.90568 0.87263 1.04170 1.76216 1.01430 1.18593 1.18514 1.78946 1.19875 0.90291 1.14664 1.47782 0.99809 1.13472 1.43168 0.64104 1.75104 1.06187 1.10951 1.21271 1.23103 0.97514 0.92418 0.99692 1.20747 0.93687 0.92587 1.19964 1.17265 0.84859 0.83715 0.75034 1.90610 1.16826 1.83252 1.49807 1.43069 1.11574 1.03408 1.71123 1.18428 0.91036 0.83810 0.92359 1.22150 0.96821 0.98299 1.15569 1.21392 0.98885 0.92027 0.92793 1.21791 0.95256 1.00046 1.14238 1.18447 0.92467 0.87540 0.88341 1.20712 0.95892 0.96431 1.41088 0.91306 1.28523 0.92968 1.09909 0.88754 1.70673 1.39110 1.05932 1.29702 0.81513 0.69982 0.69724 0.77426 1.26379 1.20279 1.21824 1.65958 1.36776 1.02510 1.28642 0.86826 0.87231 0.87798 0.80124 0.74816 0.82062 0.83504 0.86724 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.88 71.24 0.70 -0.54 16 2 C 0.13 2.73 7.37 25.30 0.19 2.91 16 3 O -0.15 -3.20 10.54 1.20 0.01 -3.19 16 4 C 0.04 0.99 7.22 24.22 0.17 1.17 16 5 C 0.24 5.15 8.20 137.12 1.12 6.27 16 6 N -0.27 -6.12 12.52 -52.40 -0.66 -6.77 16 7 N -0.04 -0.73 13.46 37.02 0.50 -0.24 16 8 N -0.19 -2.05 7.90 37.02 0.29 -1.75 16 9 H 0.50 -0.02 8.96 -347.51 -3.12 -3.14 16 10 N -0.28 -4.78 12.41 -52.35 -0.65 -5.43 16 11 C -0.10 -2.43 10.51 23.86 0.25 -2.17 16 12 C -0.27 -6.70 6.30 -19.04 -0.12 -6.82 16 13 C 0.60 19.14 7.71 86.65 0.67 19.81 16 14 O -0.53 -17.98 11.48 -4.05 -0.05 -18.02 16 15 N -0.65 -23.56 5.40 -311.36 -1.68 -25.25 16 16 C 0.37 16.61 7.51 133.29 1.00 17.61 16 17 C -0.30 -12.70 8.90 22.72 0.20 -12.50 16 18 C -0.03 -1.09 10.15 22.39 0.23 -0.86 16 19 C -0.29 -13.57 9.83 22.87 0.22 -13.34 16 20 C 0.26 13.61 6.40 40.19 0.26 13.86 16 21 C -0.51 -28.66 9.57 23.47 0.22 -28.44 16 22 H 0.07 3.93 8.05 -2.91 -0.02 3.91 16 23 C 0.01 0.83 5.52 85.29 0.47 1.31 16 24 N -0.83 -46.95 13.65 21.84 0.30 -46.65 16 25 Si 1.18 57.49 25.61 68.60 1.76 59.24 16 26 H -0.33 -15.80 7.11 99.48 0.71 -15.10 16 27 H -0.28 -13.06 6.61 99.48 0.66 -12.41 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 N -0.61 -30.86 4.54 -186.40 -0.85 -31.71 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.88 6.47 -2.39 -0.02 1.87 16 33 H 0.18 3.79 7.73 -2.91 -0.02 3.77 16 34 H 0.41 13.67 7.99 -92.71 -0.74 12.93 16 35 H 0.16 6.30 5.16 -9.91 -0.05 6.25 16 36 H 0.15 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.28 15.33 8.72 -92.71 -0.81 14.52 16 Total: -1.00 -71.77 338.87 1.78 -69.99 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -2.79 Total: 11.51 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.59 Total: -1.73 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -2.75 Total: -117.80 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.03 Total: -21.21 kcal Atomic # 14 Polarization: 57.49 SS G_CDS: 1.76 Total: 59.24 kcal Total: -71.77 1.78 -69.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592503865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.524 kcal (2) G-P(sol) polarization free energy of solvation -71.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds