Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38301 * 120.07047 * 0.57451 * 12 11 10 14 14 C 1.50707 * 119.93198 * 179.70343 * 13 12 11 15 15 O 1.42907 * 109.46636 * 269.97738 * 14 13 12 16 16 C 1.35910 * 116.99591 * 179.97438 * 15 14 13 17 17 C 1.39195 * 120.77807 * 359.72748 * 16 15 14 18 18 N 1.32145 * 119.11931 * 179.74040 * 17 16 15 19 19 C 1.32549 * 120.80253 * 0.56331 * 18 17 16 20 20 C 1.48403 * 119.14840 * 179.70502 * 19 18 17 21 21 N 1.34063 * 126.68121 * 179.97438 * 20 19 18 22 22 N 1.28985 * 107.26924 * 180.02562 * 21 20 19 23 23 N 1.28727 * 108.94834 * 0.02562 * 22 21 20 24 24 H 0.96999 * 125.33891 * 179.97438 * 23 22 21 25 25 N 1.28879 * 109.32306 * 359.72851 * 23 22 21 26 26 N 1.32558 * 121.70635 * 359.67893 * 19 18 17 27 27 C 1.32137 * 120.80342 * 0.03018 * 26 19 18 28 28 C 1.38302 * 120.13771 * 359.68122 * 13 12 11 29 29 C 1.38101 * 120.06877 * 0.04228 * 28 13 12 30 30 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 33 33 H 1.09002 * 109.47040 * 29.97463 * 14 13 12 34 34 H 1.08995 * 109.46954 * 149.97923 * 14 13 12 35 35 H 1.08002 * 120.44135 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.43892 * 179.97438 * 27 26 19 37 37 H 1.07999 * 119.96521 * 180.02562 * 28 13 12 38 38 H 1.07997 * 120.03156 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 8 6.2455 -6.6813 -0.8592 16 6 6.8729 -7.8848 -0.9306 17 6 7.1761 -8.5996 0.2247 18 7 7.7821 -9.7689 0.1170 19 6 8.1103 -10.2565 -1.0711 20 6 8.7958 -11.5704 -1.1490 21 7 9.1931 -12.2015 -2.2630 22 7 9.7436 -13.3099 -1.8995 23 7 9.7053 -13.3943 -0.6156 24 1 10.0535 -14.1323 -0.0912 25 7 9.1364 -12.3420 -0.1359 26 7 7.8415 -9.6011 -2.1915 27 6 7.2324 -8.4289 -2.1603 28 6 3.8530 -4.7987 0.2042 29 6 3.2232 -3.5745 0.0950 30 1 -0.4849 0.8401 0.0004 31 1 5.9419 -1.5655 0.2316 32 1 7.0534 -3.7517 0.4353 33 1 6.8234 -6.0908 1.0345 34 1 5.2448 -6.9070 0.9342 35 1 6.9162 -8.2054 1.1961 36 1 7.0166 -7.8998 -3.0767 37 1 3.2703 -5.7079 0.1942 38 1 2.1486 -3.5262 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = 150.133982 kcal Electronic energy + Delta-G solvation = -26275.101520 eV Core-core repulsion = 22123.044698 eV Total energy + Delta-G solvation = -4152.056822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.85427 -41.60295 -39.56367 -38.78904 -36.78887 -34.79623 -34.29247 -33.79080 -32.60292 -31.53639 -30.48062 -30.24511 -26.79972 -25.79866 -25.46315 -24.75106 -24.07288 -22.70526 -22.28929 -20.78078 -19.78369 -18.57811 -18.19350 -18.03770 -17.69824 -17.57475 -17.36168 -16.31443 -15.26052 -15.11044 -14.86746 -14.61664 -14.37610 -14.26611 -14.07577 -13.92834 -13.85594 -13.24190 -12.86497 -12.69694 -12.58790 -12.34049 -12.00068 -11.83282 -11.66720 -11.55968 -11.49854 -11.33910 -11.07813 -11.02739 -10.90269 -10.80202 -10.26788 -9.62430 -9.54581 -9.01098 -8.89644 -8.45467 -7.58570 -6.55318 -4.22332 0.09796 0.61033 0.77470 1.71318 1.78434 1.79666 1.96506 2.75247 3.00097 3.15354 3.17765 3.31026 3.37617 3.40394 3.86495 4.12292 4.24490 4.30871 4.36310 4.44020 4.66305 4.83565 4.86702 4.90048 4.97663 5.07270 5.18645 5.37802 5.45188 5.55470 5.67313 5.95538 5.95869 6.12685 6.35597 6.36662 6.58772 6.78138 6.90188 7.00379 7.10074 7.41670 7.50083 7.64420 7.78613 7.88027 8.78703 9.38200 10.51481 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.001587 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.258205 B =17643.085276 C =17695.072688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.209 6.209 10 C 0.171 3.829 11 C -0.196 4.196 12 C -0.048 4.048 13 C -0.200 4.200 14 C 0.111 3.889 15 O -0.286 6.286 16 C 0.059 3.941 17 C 0.063 3.937 18 N -0.446 5.446 19 C 0.338 3.662 20 C 0.240 3.760 21 N -0.234 5.234 22 N -0.052 5.052 23 N -0.227 5.227 24 H 0.478 0.522 25 N -0.256 5.256 26 N -0.440 5.440 27 C 0.125 3.875 28 C -0.044 4.044 29 C -0.226 4.226 30 H 0.282 0.718 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.112 0.888 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.780 -20.889 1.512 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.113 6.113 10 C 0.117 3.883 11 C -0.215 4.215 12 C -0.067 4.067 13 C -0.201 4.201 14 C 0.038 3.962 15 O -0.196 6.196 16 C 0.006 3.994 17 C -0.105 4.105 18 N -0.162 5.162 19 C 0.070 3.930 20 C -0.042 4.042 21 N -0.109 5.109 22 N -0.047 5.047 23 N -0.074 5.074 24 H 0.332 0.668 25 N -0.110 5.110 26 N -0.154 5.154 27 C -0.045 4.045 28 C -0.062 4.062 29 C -0.245 4.245 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.198 0.802 36 H 0.205 0.795 37 H 0.130 0.870 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.282 -21.696 0.988 27.755 hybrid contribution -0.380 1.353 0.859 1.647 sum 16.902 -20.343 1.847 26.513 Atomic orbital electron populations 1.69641 1.05622 1.28786 1.46831 1.24502 0.95060 0.98984 0.95340 0.86166 0.80326 0.81246 0.79119 1.19725 1.20646 1.18276 1.20808 0.76679 0.96801 1.52510 0.87398 1.83571 1.22867 1.25860 1.78999 1.19204 0.91756 0.85508 0.91801 1.20194 0.91984 0.97919 1.11439 1.20496 0.98346 0.91206 0.96615 1.18771 0.93546 0.91811 1.15990 1.21704 0.98956 0.94111 0.81449 1.86387 1.70253 1.29549 1.33418 1.21202 0.93453 0.88112 0.96649 1.23469 0.97390 0.90601 0.99051 1.68005 1.09321 1.11975 1.26849 1.18464 0.98540 0.91110 0.84841 1.22131 1.01746 0.95392 0.84956 1.76257 1.11013 0.99508 1.24123 1.79011 1.15683 1.14602 0.95407 1.47857 1.37658 1.16366 1.05490 0.66762 1.75106 1.13467 0.96691 1.25724 1.68211 1.10184 1.06623 1.30406 1.22829 0.94208 0.90461 0.96953 1.20666 0.93201 0.97017 0.95346 1.21266 1.01369 0.91667 1.10187 0.90812 0.86148 0.86647 0.91194 0.91169 0.80208 0.79503 0.86969 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.17 13.96 55.48 0.77 -23.39 16 2 C 0.07 1.76 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 20.70 28.62 -169.99 -4.86 15.84 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.52 9.95 30.89 0.31 -10.21 16 8 H 0.11 2.94 5.44 -52.48 -0.29 2.65 16 9 O -0.21 -5.21 8.59 0.05 0.00 -5.21 16 10 C 0.17 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.20 -3.53 9.99 -39.39 -0.39 -3.93 16 12 C -0.05 -0.72 9.69 -39.61 -0.38 -1.10 16 13 C -0.20 -2.87 5.51 -104.57 -0.58 -3.45 16 14 C 0.11 1.16 4.89 36.01 0.18 1.34 16 15 O -0.29 -3.23 10.14 -19.46 -0.20 -3.43 16 16 C 0.06 0.60 6.73 -38.87 -0.26 0.34 16 17 C 0.06 0.60 10.30 -17.06 -0.18 0.43 16 18 N -0.45 -5.15 10.33 -11.01 -0.11 -5.26 16 19 C 0.34 4.16 7.59 -156.97 -1.19 2.97 16 20 C 0.24 2.85 8.13 -156.30 -1.27 1.58 16 21 N -0.23 -2.81 12.51 32.15 0.40 -2.41 16 22 N -0.05 -0.48 13.47 60.35 0.81 0.33 16 23 N -0.23 -1.46 7.90 60.35 0.48 -0.99 16 24 H 0.48 0.56 8.96 -340.37 -3.05 -2.49 16 25 N -0.26 -2.50 12.37 32.16 0.40 -2.10 16 26 N -0.44 -5.28 10.34 -11.02 -0.11 -5.39 16 27 C 0.12 1.27 11.27 -17.07 -0.19 1.07 16 28 C -0.04 -0.71 9.69 -39.61 -0.38 -1.09 16 29 C -0.23 -4.47 9.17 -39.40 -0.36 -4.83 16 30 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.07 0.58 7.64 -51.93 -0.40 0.18 16 34 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 35 H 0.18 1.23 6.46 -52.49 -0.34 0.90 16 36 H 0.19 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.14 2.84 5.64 -52.49 -0.30 2.55 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -32.23 346.94 -7.85 -40.08 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.59 Total: -1.48 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -5.06 Total: -11.82 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 2.64 Total: -39.21 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.20 Total: -8.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.86 Total: 15.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.23 -7.85 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.215 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds