Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38301 * 120.07047 * 0.57451 * 12 11 10 14 14 C 1.50707 * 119.93198 * 179.70343 * 13 12 11 15 15 O 1.42907 * 109.46636 * 269.97738 * 14 13 12 16 16 C 1.35910 * 116.99591 * 179.97438 * 15 14 13 17 17 C 1.39195 * 120.77807 * 359.72748 * 16 15 14 18 18 N 1.32145 * 119.11931 * 179.74040 * 17 16 15 19 19 C 1.32549 * 120.80253 * 0.56331 * 18 17 16 20 20 C 1.48403 * 119.14840 * 179.70502 * 19 18 17 21 21 N 1.34063 * 126.68121 * 179.97438 * 20 19 18 22 22 N 1.28985 * 107.26924 * 180.02562 * 21 20 19 23 23 N 1.28727 * 108.94834 * 0.02562 * 22 21 20 24 24 H 0.96999 * 125.33891 * 179.97438 * 23 22 21 25 25 N 1.28879 * 109.32306 * 359.72851 * 23 22 21 26 26 N 1.32558 * 121.70635 * 359.67893 * 19 18 17 27 27 C 1.32137 * 120.80342 * 0.03018 * 26 19 18 28 28 C 1.38302 * 120.13771 * 359.68122 * 13 12 11 29 29 C 1.38101 * 120.06877 * 0.04228 * 28 13 12 30 30 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 33 33 H 1.09002 * 109.47040 * 29.97463 * 14 13 12 34 34 H 1.08995 * 109.46954 * 149.97923 * 14 13 12 35 35 H 1.08002 * 120.44135 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.43892 * 179.97438 * 27 26 19 37 37 H 1.07999 * 119.96521 * 180.02562 * 28 13 12 38 38 H 1.07997 * 120.03156 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 8 6.2455 -6.6813 -0.8592 16 6 6.8729 -7.8848 -0.9306 17 6 7.1761 -8.5996 0.2247 18 7 7.7821 -9.7689 0.1170 19 6 8.1103 -10.2565 -1.0711 20 6 8.7958 -11.5704 -1.1490 21 7 9.1931 -12.2015 -2.2630 22 7 9.7436 -13.3099 -1.8995 23 7 9.7053 -13.3943 -0.6156 24 1 10.0535 -14.1323 -0.0912 25 7 9.1364 -12.3420 -0.1359 26 7 7.8415 -9.6011 -2.1915 27 6 7.2324 -8.4289 -2.1603 28 6 3.8530 -4.7987 0.2042 29 6 3.2232 -3.5745 0.0950 30 1 -0.4849 0.8401 0.0004 31 1 5.9419 -1.5655 0.2316 32 1 7.0534 -3.7517 0.4353 33 1 6.8234 -6.0908 1.0345 34 1 5.2448 -6.9070 0.9342 35 1 6.9162 -8.2054 1.1961 36 1 7.0166 -7.8998 -3.0767 37 1 3.2703 -5.7079 0.1942 38 1 2.1486 -3.5262 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = 126.847803 kcal Electronic energy + Delta-G solvation = -26276.111285 eV Core-core repulsion = 22123.044698 eV Total energy + Delta-G solvation = -4153.066587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.57536 -42.38943 -40.97428 -39.83787 -38.23684 -35.53294 -35.07494 -34.56709 -34.47743 -32.61335 -31.85341 -31.27591 -28.09383 -26.86615 -26.54881 -25.68290 -24.97039 -23.73940 -23.48935 -22.12683 -20.48551 -19.86427 -19.37807 -19.17027 -18.88490 -18.37326 -18.29481 -17.21651 -16.64875 -16.38297 -15.87342 -15.70912 -15.61024 -15.44525 -15.32614 -15.04138 -15.00626 -14.39896 -14.20441 -14.14541 -13.96911 -13.44309 -13.11711 -12.90408 -12.70227 -12.56455 -12.47981 -12.37506 -12.26345 -12.17466 -12.14145 -11.92184 -11.78669 -11.28928 -10.92822 -10.40867 -9.83171 -9.66511 -9.12528 -8.51157 -6.24340 -0.69158 -0.12347 0.06456 0.42412 0.56036 0.99576 1.21831 1.32761 1.36056 1.51911 1.96100 2.16359 2.27346 2.61524 2.63550 2.79674 3.02648 3.11899 3.20953 3.51083 3.59882 3.63358 3.95144 3.97402 4.06655 4.14385 4.31057 4.33959 4.37469 4.55936 4.68585 4.75778 4.92764 4.93960 5.21498 5.33039 5.53083 5.54502 5.61193 5.67501 5.78028 5.88175 6.08290 6.19792 6.72900 6.82883 7.04333 7.55514 8.59951 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.045946 B = 0.001587 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.258205 B =17643.085276 C =17695.072688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.401 4.401 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.130 3.870 11 C -0.198 4.198 12 C -0.041 4.041 13 C -0.171 4.171 14 C 0.107 3.893 15 O -0.297 6.297 16 C 0.062 3.938 17 C 0.071 3.929 18 N -0.460 5.460 19 C 0.326 3.674 20 C 0.222 3.778 21 N -0.265 5.265 22 N -0.053 5.053 23 N -0.194 5.194 24 H 0.498 0.502 25 N -0.258 5.258 26 N -0.460 5.460 27 C 0.122 3.878 28 C -0.046 4.046 29 C -0.244 4.244 30 H 0.285 0.715 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.212 0.788 36 H 0.205 0.795 37 H 0.139 0.861 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.965 -22.766 2.546 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.101 0.899 9 O -0.149 6.149 10 C 0.080 3.920 11 C -0.217 4.217 12 C -0.058 4.058 13 C -0.172 4.172 14 C 0.033 3.967 15 O -0.207 6.207 16 C 0.009 3.991 17 C -0.097 4.097 18 N -0.175 5.175 19 C 0.059 3.941 20 C -0.060 4.060 21 N -0.138 5.138 22 N -0.048 5.048 23 N -0.046 5.046 24 H 0.358 0.642 25 N -0.113 5.113 26 N -0.175 5.175 27 C -0.047 4.047 28 C -0.064 4.064 29 C -0.263 4.263 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.178 0.822 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.228 0.772 36 H 0.222 0.778 37 H 0.157 0.843 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 20.515 -23.641 2.020 31.366 hybrid contribution -1.087 1.469 0.592 1.920 sum 19.428 -22.172 2.612 29.595 Atomic orbital electron populations 1.69727 1.06925 1.29658 1.49757 1.25285 0.95865 1.02179 0.95414 0.85224 0.78877 0.77424 0.79266 1.19178 1.19340 1.18472 1.20720 0.78018 0.96189 1.52766 0.89921 1.83518 1.21336 1.27613 1.82427 1.19800 0.93371 0.85088 0.93701 1.20544 0.90480 1.00038 1.10598 1.21025 1.00557 0.89881 0.94386 1.19273 0.92790 0.94107 1.11032 1.21847 1.00895 0.92177 0.81734 1.86310 1.70737 1.30109 1.33533 1.21091 0.93538 0.87686 0.96811 1.23959 0.95931 0.89709 1.00093 1.68061 1.10104 1.12860 1.26498 1.18641 0.98821 0.91441 0.85240 1.22268 1.02577 0.95900 0.85288 1.76234 1.12206 1.00427 1.24970 1.78940 1.15579 1.13965 0.96280 1.47906 1.35691 1.16041 1.04989 0.64182 1.75055 1.13644 0.97158 1.25471 1.68239 1.11137 1.07451 1.30677 1.23158 0.93487 0.90009 0.98008 1.20994 0.94641 0.96359 0.94450 1.21289 1.00399 0.93194 1.11461 0.90536 0.85110 0.82243 0.87667 0.88593 0.77151 0.77811 0.84282 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.77 13.96 21.61 0.30 -53.47 16 2 C 0.01 0.65 5.49 84.83 0.47 1.11 16 3 Si 0.97 44.12 28.62 68.60 1.96 46.09 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.40 -22.87 9.95 67.92 0.68 -22.19 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -12.60 8.59 -22.72 -0.20 -12.80 16 10 C 0.13 5.68 6.65 22.58 0.15 5.84 16 11 C -0.20 -6.78 9.99 22.39 0.22 -6.55 16 12 C -0.04 -1.04 9.69 22.25 0.22 -0.82 16 13 C -0.17 -4.15 5.51 -19.83 -0.11 -4.26 16 14 C 0.11 1.58 4.89 71.24 0.35 1.93 16 15 O -0.30 -5.24 10.14 -92.53 -0.94 -6.17 16 16 C 0.06 1.01 6.73 22.73 0.15 1.16 16 17 C 0.07 1.06 10.30 84.88 0.87 1.93 16 18 N -0.46 -9.33 10.33 -188.76 -1.95 -11.28 16 19 C 0.33 7.48 7.59 137.59 1.04 8.52 16 20 C 0.22 4.99 8.13 137.35 1.12 6.11 16 21 N -0.26 -6.12 12.51 -52.21 -0.65 -6.78 16 22 N -0.05 -0.90 13.47 37.02 0.50 -0.40 16 23 N -0.19 -2.12 7.90 37.02 0.29 -1.83 16 24 H 0.50 -0.04 8.96 -347.54 -3.12 -3.15 16 25 N -0.26 -4.58 12.37 -52.15 -0.65 -5.22 16 26 N -0.46 -10.34 10.34 -188.77 -1.95 -12.29 16 27 C 0.12 2.17 11.27 84.88 0.96 3.12 16 28 C -0.05 -1.39 9.69 22.25 0.22 -1.18 16 29 C -0.24 -9.91 9.17 22.39 0.21 -9.71 16 30 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 32 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.11 0.94 7.64 -2.39 -0.02 0.92 16 34 H 0.10 1.03 7.66 -2.39 -0.02 1.01 16 35 H 0.21 1.65 6.46 -2.91 -0.02 1.63 16 36 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.11 4.96 5.64 -2.91 -0.02 4.95 16 Total: -1.00 -75.60 346.94 1.31 -74.29 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -1.95 Total: 4.84 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 6.54 Total: -14.98 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -4.11 Total: -91.27 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.13 Total: -18.97 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.96 Total: 46.09 kcal Total: -75.60 1.31 -74.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.138 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds