Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33650 * 125.68452 * 2 1 4 4 C 1.34569 * 110.88622 * 180.02562 * 3 2 1 5 5 C 1.47932 * 125.56844 * 179.97438 * 4 3 2 6 6 N 1.34204 * 126.70003 * 184.39558 * 5 4 3 7 7 N 1.28975 * 107.24957 * 179.97438 * 6 5 4 8 8 N 1.28719 * 108.99827 * 359.97438 * 7 6 5 9 9 H 0.96997 * 125.32083 * 179.97438 * 8 7 6 10 10 N 1.28868 * 109.35768 * 359.77000 * 8 7 6 11 11 C 1.35545 * 108.86011 * 359.71734 * 4 3 2 12 12 C 1.36682 * 125.68283 * 180.02562 * 2 1 3 13 13 C 1.47290 * 127.12103 * 359.97438 * 12 2 1 14 14 O 1.21620 * 120.00284 * 37.67002 * 13 12 2 15 15 N 1.34775 * 119.99823 * 217.66959 * 13 12 2 16 16 C 1.37078 * 119.99963 * 185.19079 * 15 13 12 17 17 H 1.07998 * 120.00241 * 231.41950 * 16 15 13 18 18 C 1.38920 * 120.00050 * 51.42205 * 16 15 13 19 19 N 1.31415 * 119.99996 * 44.79664 * 18 16 15 20 20 Si 1.86806 * 119.99920 * 224.79914 * 18 16 15 21 21 H 1.48502 * 109.46725 * 64.97686 * 20 18 16 22 22 H 1.48497 * 109.46944 * 184.97325 * 20 18 16 23 23 H 1.48496 * 109.47307 * 304.97812 * 20 18 16 24 24 C 1.39340 * 120.00333 * 5.18855 * 15 13 12 25 25 C 1.39091 * 119.69621 * 40.56828 * 24 15 13 26 26 C 1.38366 * 119.09740 * 179.74514 * 25 24 15 27 27 C 1.38840 * 118.49346 * 0.47547 * 26 25 24 28 28 C 1.38138 * 119.31151 * 359.50436 * 27 26 25 29 29 N 1.31886 * 120.86055 * 0.27257 * 28 27 26 30 30 H 1.09005 * 109.46994 * 269.97093 * 1 2 3 31 31 H 1.09001 * 109.47372 * 29.97138 * 1 2 3 32 32 H 1.09004 * 109.47597 * 149.97307 * 1 2 3 33 33 H 1.08000 * 127.06979 * 180.30298 * 11 4 3 34 34 H 0.96998 * 120.00039 * 184.72712 * 19 18 16 35 35 H 1.08004 * 120.45165 * 359.97438 * 25 24 15 36 36 H 1.08005 * 120.75741 * 180.22821 * 26 25 24 37 37 H 1.07997 * 120.34231 * 179.78003 * 27 26 25 38 38 H 1.08009 * 119.57302 * 180.25767 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2866 1.0856 0.0000 4 6 3.5876 0.7418 -0.0006 5 6 4.7269 1.6855 -0.0013 6 7 6.0289 1.3708 -0.0843 7 7 6.6923 2.4764 -0.0524 8 7 5.8659 3.4583 0.0456 9 1 6.1114 4.3957 0.0885 10 7 4.6612 3.0016 0.0733 11 6 3.6836 -0.6102 0.0054 12 6 2.3042 -1.1102 -0.0005 13 6 1.8688 -2.5173 -0.0006 14 8 0.8923 -2.8516 -0.6440 15 7 2.5524 -3.4343 0.7123 16 6 2.2129 -4.7597 0.6286 17 1 2.0374 -5.3300 1.5288 18 6 2.0947 -5.3694 -0.6140 19 7 3.0062 -5.1610 -1.5375 20 14 0.6401 -6.4854 -0.9723 21 1 -0.6128 -5.6887 -0.9472 22 1 0.8078 -7.1022 -2.3126 23 1 0.5690 -7.5522 0.0582 24 6 3.6043 -3.0351 1.5343 25 6 3.4853 -1.8740 2.2908 26 6 4.5354 -1.4920 3.1068 27 6 5.6768 -2.2820 3.1309 28 6 5.7262 -3.4228 2.3535 29 7 4.7078 -3.7647 1.5884 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 4.5893 -1.1985 0.0111 34 1 2.8891 -5.5307 -2.4266 35 1 2.5840 -1.2806 2.2446 36 1 4.4702 -0.5974 3.7084 37 1 6.5156 -2.0099 3.7544 38 1 6.6105 -4.0427 2.3722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606165165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = 177.721009 kcal Electronic energy + Delta-G solvation = -29590.607087 eV Core-core repulsion = 25439.746528 eV Total energy + Delta-G solvation = -4150.860559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.59347 -42.40633 -39.80987 -38.05824 -34.68926 -34.58449 -33.65818 -33.12858 -32.04024 -31.65532 -31.24436 -29.13045 -27.47153 -25.43728 -24.71789 -23.67215 -23.12529 -22.54386 -21.91155 -20.85575 -19.49209 -18.88863 -17.62247 -17.61045 -17.35166 -16.20107 -15.87596 -15.64698 -15.30120 -14.88600 -14.64253 -14.26278 -14.11683 -13.84441 -13.58708 -13.15391 -12.91058 -12.82011 -12.67491 -12.46381 -12.43433 -12.42092 -11.77651 -11.62269 -11.55632 -11.46955 -11.26440 -11.20861 -11.03565 -10.65544 -10.35153 -9.56757 -9.29676 -8.99563 -8.82371 -8.50689 -8.35809 -8.18238 -7.31183 -6.44361 -4.05377 0.76510 1.21948 1.70445 1.96991 1.98779 2.14614 2.52261 2.78982 3.30542 3.39323 3.50404 3.69097 3.97545 4.06093 4.30366 4.51044 4.66545 4.83938 4.90196 5.12175 5.18442 5.27479 5.35810 5.39979 5.49206 5.64757 5.71008 5.74117 5.79119 5.87811 5.94663 6.18091 6.20690 6.31013 6.34998 6.49876 6.67294 6.81277 7.14728 7.29481 7.52100 7.99094 8.06229 8.43048 8.74958 9.03537 9.32800 9.77375 10.53910 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.004561 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.783810 B = 6137.571785 C = 7271.873167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.070 3.930 3 O -0.163 6.163 4 C 0.026 3.974 5 C 0.267 3.733 6 N -0.248 5.248 7 N -0.046 5.046 8 N -0.229 5.229 9 H 0.476 0.524 10 N -0.289 5.289 11 C -0.077 4.077 12 C -0.213 4.213 13 C 0.566 3.434 14 O -0.523 6.523 15 N -0.368 5.368 16 C -0.370 4.370 17 H 0.090 0.910 18 C 0.104 3.896 19 N -0.793 5.793 20 Si 0.896 3.104 21 H -0.263 1.263 22 H -0.288 1.288 23 H -0.273 1.273 24 C 0.360 3.640 25 C -0.208 4.208 26 C -0.060 4.060 27 C -0.227 4.227 28 C 0.122 3.878 29 N -0.475 5.475 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.162 0.838 34 H 0.270 0.730 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 16.049 5.485 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.016 3.984 3 O -0.060 6.060 4 C -0.025 4.025 5 C -0.012 4.012 6 N -0.122 5.122 7 N -0.041 5.041 8 N -0.075 5.075 9 H 0.330 0.670 10 N -0.141 5.141 11 C -0.100 4.100 12 C -0.218 4.218 13 C 0.355 3.645 14 O -0.400 6.400 15 N -0.080 5.080 16 C -0.493 4.493 17 H 0.108 0.892 18 C -0.113 4.113 19 N -0.421 5.421 20 Si 0.720 3.280 21 H -0.188 1.188 22 H -0.214 1.214 23 H -0.199 1.199 24 C 0.132 3.868 25 C -0.231 4.231 26 C -0.086 4.086 27 C -0.249 4.249 28 C -0.038 4.038 29 N -0.189 5.189 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.180 0.820 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.460 15.470 4.351 16.438 hybrid contribution -0.457 0.700 0.274 0.879 sum 3.003 16.170 4.625 17.084 Atomic orbital electron populations 1.20609 0.83422 1.05493 1.04196 1.22769 0.93746 0.82316 0.99571 1.83659 1.14736 1.34799 1.72804 1.17314 0.79794 0.89560 1.15809 1.21861 0.90771 0.86622 1.01923 1.76242 1.01420 1.17100 1.17486 1.78954 1.20112 0.90401 1.14634 1.47676 1.01163 1.12618 1.46006 0.67016 1.75144 1.04940 1.11764 1.22249 1.22965 0.97766 0.91525 0.97755 1.21532 0.92229 0.95560 1.12452 1.17145 0.82963 0.82163 0.82221 1.90630 1.26582 1.80119 1.42711 1.41031 1.22047 1.07310 1.37616 1.18752 1.52148 0.84727 0.93715 0.89214 1.25275 0.94449 0.95398 0.96172 1.70396 1.27270 1.39658 1.04757 0.86552 0.84739 0.79573 0.77128 1.18807 1.21417 1.19856 1.19311 0.87116 0.88416 0.91984 1.21778 1.01147 0.99698 1.00523 1.21124 0.92928 0.98261 0.96330 1.21771 0.99434 0.98547 1.05098 1.22526 0.96168 0.93974 0.91172 1.67485 0.98960 1.33084 1.19350 0.89514 0.90278 0.86881 0.82049 0.91965 0.85929 0.86335 0.86157 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.22 36.00 0.37 -0.73 16 2 C 0.07 1.18 7.37 -34.87 -0.26 0.92 16 3 O -0.16 -2.68 10.54 6.69 0.07 -2.61 16 4 C 0.03 0.45 7.22 -36.57 -0.26 0.18 16 5 C 0.27 4.11 8.20 -156.25 -1.28 2.83 16 6 N -0.25 -3.82 12.52 32.09 0.40 -3.41 16 7 N -0.05 -0.56 13.46 60.35 0.81 0.26 16 8 N -0.23 -2.11 7.90 60.35 0.48 -1.63 16 9 H 0.48 1.77 8.96 -340.34 -3.05 -1.28 16 10 N -0.29 -3.67 12.41 32.10 0.40 -3.27 16 11 C -0.08 -1.47 7.81 -37.12 -0.29 -1.76 16 12 C -0.21 -4.31 3.81 -103.35 -0.39 -4.71 16 13 C 0.57 13.86 6.99 -12.58 -0.09 13.77 16 14 O -0.52 -13.88 14.65 5.26 0.08 -13.80 16 15 N -0.37 -9.41 2.74 -61.88 -0.17 -9.58 16 16 C -0.37 -10.25 8.45 -14.95 -0.13 -10.38 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.10 2.88 3.98 -17.48 -0.07 2.81 16 19 N -0.79 -22.75 13.91 55.49 0.77 -21.98 16 20 Si 0.90 21.52 29.69 -169.99 -5.05 16.48 16 21 H -0.26 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.36 8.21 5.34 -154.71 -0.83 7.39 16 25 C -0.21 -3.95 6.38 -39.22 -0.25 -4.20 16 26 C -0.06 -0.97 10.17 -39.31 -0.40 -1.37 16 27 C -0.23 -3.54 10.11 -39.40 -0.40 -3.94 16 28 C 0.12 2.21 11.18 -17.56 -0.20 2.01 16 29 N -0.48 -10.89 9.97 -12.35 -0.12 -11.01 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 1.76 6.61 -51.93 -0.34 1.42 16 33 H 0.16 3.31 7.35 -52.49 -0.39 2.92 16 34 H 0.27 7.30 8.32 -40.82 -0.34 6.96 16 35 H 0.12 2.26 6.40 -52.48 -0.34 1.92 16 36 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.15 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -34.52 342.48 -7.43 -41.95 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.79 Total: 0.62 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -4.47 Total: 2.84 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 2.57 Total: -50.63 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.15 Total: -16.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.05 Total: 16.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.52 -7.43 -41.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606165165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.667 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds