Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48505 * 109.47002 * 269.99623 * 3 2 1 5 5 H 1.48498 * 109.46836 * 29.99653 * 3 2 1 6 6 H 1.48497 * 109.47059 * 149.99641 * 3 2 1 7 7 C 1.37880 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00294 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46873 * 179.97438 * 9 7 2 11 11 C 1.34785 * 119.99377 * 106.28340 * 10 9 7 12 12 O 1.21607 * 119.99207 * 177.83952 * 11 10 9 13 13 C 1.47555 * 120.00486 * 357.56034 * 11 10 9 14 14 C 1.41525 * 120.56493 * 331.86174 * 13 11 10 15 15 N 1.30903 * 120.16616 * 180.02562 * 14 13 11 16 16 C 1.34264 * 121.27304 * 359.97438 * 15 14 13 17 17 N 1.32428 * 131.63329 * 179.97438 * 16 15 14 18 18 C 1.33701 * 109.32510 * 180.02562 * 17 16 15 19 19 C 1.34910 * 108.65504 * 0.02562 * 18 17 16 20 20 N 1.37007 * 107.05680 * 359.97438 * 19 18 17 21 21 C 1.35970 * 132.54721 * 180.28990 * 20 19 18 22 22 C 1.39959 * 120.00367 * 286.27726 * 10 9 7 23 23 C 1.38870 * 120.04229 * 352.17587 * 22 10 9 24 24 C 1.38117 * 119.94936 * 179.79184 * 23 22 10 25 25 C 1.38473 * 120.04729 * 0.47850 * 24 23 22 26 26 F 1.35098 * 119.95444 * 179.72777 * 25 24 23 27 27 C 1.38483 * 120.09255 * 359.74475 * 25 24 23 28 28 C 1.38110 * 120.04753 * 0.02562 * 27 25 24 29 29 H 0.96997 * 119.99738 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47271 * 59.99281 * 9 7 2 31 31 H 1.09008 * 109.46561 * 299.99429 * 9 7 2 32 32 H 1.07998 * 119.92121 * 359.97438 * 14 13 11 33 33 H 1.07992 * 125.66927 * 180.02562 * 18 17 16 34 34 H 1.07998 * 126.46895 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.58104 * 359.96447 * 21 20 19 36 36 H 1.08002 * 120.02667 * 359.97438 * 23 22 10 37 37 H 1.07996 * 119.97287 * 180.20680 * 24 23 22 38 38 H 1.08000 * 119.97660 * 179.97438 * 27 25 24 39 39 H 1.07993 * 120.02203 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.5334 -3.1023 -1.1177 12 8 4.9745 -4.2355 -1.1060 13 6 4.5768 -2.3065 -2.3595 14 6 3.6092 -1.3035 -2.6057 15 7 3.6547 -0.6024 -3.7102 16 6 4.6100 -0.8123 -4.6300 17 7 4.8483 -0.2360 -5.7983 18 6 5.9268 -0.7958 -6.3560 19 6 6.3924 -1.7540 -5.5283 20 7 5.5689 -1.7743 -4.4336 21 6 5.5656 -2.5242 -3.2993 22 6 3.9123 -3.3476 1.1662 23 6 3.5157 -2.7618 2.3611 24 6 3.4258 -3.5266 3.5076 25 6 3.7405 -4.8745 3.4683 26 9 3.6573 -5.6197 4.5921 27 6 4.1408 -5.4597 2.2788 28 6 4.2274 -4.6996 1.1289 29 1 -0.4849 0.8400 -0.0004 30 1 3.8746 -0.6800 0.8910 31 1 3.8752 -0.6805 -0.8890 32 1 2.8307 -1.1165 -1.8808 33 1 6.3541 -0.5258 -7.3103 34 1 7.2520 -2.3858 -5.6969 35 1 6.3204 -3.2796 -3.1378 36 1 3.2747 -1.7094 2.3932 37 1 3.1141 -3.0721 4.4364 38 1 4.3862 -6.5111 2.2503 39 1 4.5400 -5.1562 0.2016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632640660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = 104.183339 kcal Electronic energy + Delta-G solvation = -28826.030724 eV Core-core repulsion = 24652.061371 eV Total energy + Delta-G solvation = -4173.969353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.55735 -43.01521 -40.82857 -38.45125 -37.52155 -35.87144 -34.50513 -32.97947 -31.59420 -30.79548 -29.56957 -29.02060 -28.19619 -25.09755 -23.97402 -23.48155 -22.54958 -21.99782 -21.75077 -19.96304 -18.69599 -17.73287 -17.45449 -17.39761 -16.93512 -16.42878 -16.28790 -16.00540 -15.32364 -15.22338 -14.99591 -14.55099 -14.29300 -14.11045 -13.99204 -13.83037 -13.62222 -13.22465 -12.91859 -12.77179 -12.54903 -12.41387 -12.17207 -11.84383 -11.47948 -11.36797 -10.97584 -10.81189 -10.67760 -10.41554 -10.00155 -9.84679 -9.48993 -9.28217 -9.17605 -9.00267 -8.76087 -8.18836 -7.46256 -6.54203 -4.64475 0.29100 0.89771 1.44230 1.59667 2.19725 2.48922 2.96818 3.01963 3.06901 3.10540 3.18989 3.64689 3.72708 4.01439 4.03894 4.19567 4.28356 4.55974 4.64977 4.69374 4.82146 5.06586 5.15028 5.17402 5.23024 5.33898 5.58326 5.62098 5.71954 5.80165 6.00663 6.18584 6.24212 6.29546 6.44256 6.48470 6.50646 6.53984 6.60510 6.79325 6.96669 7.35804 7.48097 7.55774 7.98060 8.00564 8.12818 8.53281 8.98286 10.55464 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010766 B = 0.004400 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.086320 B = 6362.549599 C = 8581.942287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.094 3.906 3 Si 0.852 3.148 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.565 4.565 8 H 0.091 0.909 9 C 0.177 3.823 10 N -0.515 5.515 11 C 0.578 3.422 12 O -0.529 6.529 13 C -0.215 4.215 14 C 0.184 3.816 15 N -0.443 5.443 16 C 0.392 3.608 17 N -0.480 5.480 18 C 0.048 3.952 19 C -0.107 4.107 20 N -0.404 5.404 21 C 0.172 3.828 22 C 0.161 3.839 23 C -0.103 4.103 24 C -0.134 4.134 25 C 0.060 3.940 26 F -0.150 7.150 27 C -0.138 4.138 28 C -0.143 4.143 29 H 0.275 0.725 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.239 0.761 33 H 0.187 0.813 34 H 0.186 0.814 35 H 0.185 0.815 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 -4.974 -2.019 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.115 4.115 3 Si 0.676 3.324 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.602 4.602 8 H 0.109 0.891 9 C 0.057 3.943 10 N -0.232 5.232 11 C 0.367 3.633 12 O -0.410 6.410 13 C -0.224 4.224 14 C -0.001 4.001 15 N -0.154 5.154 16 C 0.043 3.957 17 N -0.202 5.202 18 C -0.103 4.103 19 C -0.236 4.236 20 N -0.082 5.082 21 C 0.037 3.963 22 C 0.066 3.934 23 C -0.123 4.123 24 C -0.154 4.154 25 C 0.040 3.960 26 F -0.129 7.129 27 C -0.158 4.158 28 C -0.162 4.162 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.254 0.746 33 H 0.204 0.796 34 H 0.204 0.796 35 H 0.202 0.798 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 11.377 -4.027 -2.847 12.400 hybrid contribution 1.272 -0.381 0.749 1.524 sum 12.649 -4.408 -2.098 13.558 Atomic orbital electron populations 1.69839 1.06265 1.28220 1.45013 1.24844 0.94796 0.98857 0.93003 0.87191 0.80698 0.84074 0.80447 1.18128 1.19981 1.18525 1.21162 0.87711 0.96012 1.55283 0.89060 1.20818 0.97176 0.76815 0.99506 1.45392 1.54609 1.15129 1.08089 1.17528 0.77883 0.85490 0.82368 1.90439 1.48528 1.18021 1.83986 1.20664 1.00257 1.03735 0.97716 1.25868 0.96515 0.85547 0.92170 1.68223 1.18756 1.27057 1.01408 1.22594 0.88824 0.88894 0.95341 1.70746 1.17680 1.27276 1.04475 1.22619 0.93250 0.94195 1.00209 1.22629 1.02417 1.09283 0.89300 1.44058 1.23475 1.26463 1.14194 1.22425 0.98024 0.92818 0.83030 1.17867 0.99021 0.90585 0.85915 1.20906 0.99956 1.01478 0.89948 1.20873 1.02829 0.92095 0.99567 1.17746 1.05547 0.89885 0.82793 1.91438 1.94470 1.76646 1.50350 1.21031 1.02711 1.00623 0.91422 1.22437 1.00750 0.92101 1.00938 0.91434 0.93382 0.93162 0.74619 0.79575 0.79648 0.79754 0.83502 0.84844 0.85164 0.79966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.46 13.96 55.43 0.77 -21.69 16 2 C 0.09 2.25 5.43 -17.82 -0.10 2.15 16 3 Si 0.85 17.81 27.47 -169.99 -4.67 13.14 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 7 C -0.56 -12.76 7.23 -34.44 -0.25 -13.01 16 8 H 0.09 2.34 8.06 -52.48 -0.42 1.92 16 9 C 0.18 3.36 3.10 -5.19 -0.02 3.35 16 10 N -0.51 -9.22 2.75 -115.86 -0.32 -9.54 16 11 C 0.58 9.80 7.40 -12.46 -0.09 9.71 16 12 O -0.53 -9.04 13.15 5.27 0.07 -8.97 16 13 C -0.21 -3.46 5.49 -104.88 -0.58 -4.04 16 14 C 0.18 3.41 8.67 -16.70 -0.14 3.27 16 15 N -0.44 -8.81 10.45 -13.37 -0.14 -8.95 16 16 C 0.39 7.12 8.91 -322.24 -2.87 4.25 16 17 N -0.48 -8.38 11.31 -14.41 -0.16 -8.55 16 18 C 0.05 0.60 11.82 -17.92 -0.21 0.39 16 19 C -0.11 -1.19 11.76 -16.42 -0.19 -1.39 16 20 N -0.40 -5.85 2.94 -63.76 -0.19 -6.04 16 21 C 0.17 2.31 10.66 -15.75 -0.17 2.14 16 22 C 0.16 2.83 6.32 -83.68 -0.53 2.30 16 23 C -0.10 -1.72 8.97 -39.39 -0.35 -2.07 16 24 C -0.13 -2.04 10.02 -39.54 -0.40 -2.44 16 25 C 0.06 0.93 7.30 -39.40 -0.29 0.64 16 26 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 27 C -0.14 -2.07 10.02 -39.54 -0.40 -2.46 16 28 C -0.14 -2.35 9.00 -39.40 -0.35 -2.70 16 29 H 0.28 6.78 8.31 -40.82 -0.34 6.45 16 30 H 0.05 0.89 5.90 -51.93 -0.31 0.58 16 31 H 0.05 0.95 3.56 -51.92 -0.18 0.77 16 32 H 0.24 4.80 3.51 -52.49 -0.18 4.62 16 33 H 0.19 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.19 1.83 7.93 -52.49 -0.42 1.41 16 36 H 0.15 2.48 6.18 -52.49 -0.32 2.15 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.18 3.05 4.63 -55.74 -0.26 2.79 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -28.36 332.46 -9.48 -37.84 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -2.95 Total: 9.89 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -6.94 Total: 0.09 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.03 Total: -54.76 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -4.67 Total: 13.14 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.36 -9.48 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632640660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.020 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds