Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35100 * 119.30486 * 2 1 4 4 N 1.36494 * 119.82209 * 179.97438 * 3 2 1 5 5 N 1.39705 * 134.40642 * 180.02562 * 4 3 2 6 6 N 1.28770 * 109.12484 * 179.75240 * 5 4 3 7 7 C 1.33850 * 110.36902 * 0.39086 * 6 5 4 8 8 C 1.46984 * 126.08996 * 179.87236 * 7 6 5 9 9 O 1.21658 * 120.00345 * 179.68804 * 8 7 6 10 10 N 1.34786 * 119.99406 * 359.69395 * 8 7 6 11 11 C 1.39152 * 119.99124 * 183.69803 * 10 8 7 12 12 C 1.39697 * 119.58468 * 338.96571 * 11 10 8 13 13 C 1.38643 * 119.49998 * 180.02562 * 12 11 10 14 14 C 1.38356 * 118.66933 * 359.97438 * 13 12 11 15 15 C 1.40584 * 119.13631 * 0.02562 * 14 13 12 16 16 C 1.41332 * 119.78649 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00041 * 5.12640 * 16 15 14 18 18 C 1.40020 * 119.99675 * 185.12955 * 16 15 14 19 19 N 1.30746 * 119.99867 * 184.82601 * 18 16 15 20 20 Si 1.86798 * 120.00423 * 4.82367 * 18 16 15 21 21 H 1.48502 * 109.47537 * 180.02562 * 20 18 16 22 22 H 1.48509 * 109.46972 * 300.00111 * 20 18 16 23 23 H 1.48498 * 109.47206 * 59.99980 * 20 18 16 24 24 N 1.31931 * 119.57178 * 159.26315 * 11 10 8 25 25 C 1.36991 * 119.02539 * 0.04255 * 4 3 2 26 26 C 1.40885 * 119.20836 * 359.97438 * 25 4 3 27 27 O 1.35535 * 120.29068 * 180.02562 * 26 25 4 28 28 N 1.31829 * 119.42296 * 359.97438 * 26 25 4 29 29 H 1.09002 * 109.47507 * 269.98339 * 1 2 3 30 30 H 1.09005 * 109.47022 * 29.98238 * 1 2 3 31 31 H 1.08998 * 109.47291 * 149.97796 * 1 2 3 32 32 H 1.08004 * 120.09183 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00389 * 3.70011 * 10 8 7 34 34 H 1.08008 * 120.25440 * 0.04215 * 12 11 10 35 35 H 1.07991 * 120.66852 * 179.97438 * 13 12 11 36 36 H 1.07994 * 120.43430 * 180.02562 * 14 13 12 37 37 H 0.96997 * 120.00188 * 354.98441 * 19 18 16 38 38 H 0.96707 * 114.00086 * 89.99302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1682 1.1781 0.0000 4 7 3.5331 1.1904 0.0005 5 7 4.5016 2.1973 0.0011 6 7 5.6709 1.6579 0.0067 7 6 5.5683 0.3233 0.0015 8 6 6.6863 -0.6310 0.0027 9 8 6.4650 -1.8273 0.0032 10 7 7.9567 -0.1806 0.0033 11 6 9.0142 -1.0817 -0.0733 12 6 8.8109 -2.4160 0.2872 13 6 9.8659 -3.3122 0.2108 14 6 11.0965 -2.8533 -0.2242 15 6 11.2377 -1.4986 -0.5728 16 6 12.4887 -1.0150 -1.0183 17 1 13.3098 -1.7000 -1.1693 18 6 12.6635 0.3524 -1.2639 19 7 13.7897 0.7877 -1.7654 20 14 11.2877 1.5546 -0.8750 21 1 11.7200 2.9316 -1.2243 22 1 10.0818 1.1994 -1.6657 23 1 10.9671 1.4884 0.5734 24 7 10.1976 -0.6637 -0.4799 25 6 4.2085 -0.0014 0.0002 26 6 3.4777 -1.2058 -0.0002 27 8 4.1236 -2.3974 0.0000 28 7 2.1601 -1.1638 0.0003 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6184 2.1077 0.0004 33 1 8.1337 0.7716 0.0572 34 1 7.8391 -2.7470 0.6228 35 1 9.7299 -4.3478 0.4852 36 1 11.9377 -3.5268 -0.2951 37 1 14.5298 0.1753 -1.8994 38 1 4.3108 -2.7432 0.8835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644420680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = 106.035034 kcal Electronic energy + Delta-G solvation = -28408.118063 eV Core-core repulsion = 24254.148967 eV Total energy + Delta-G solvation = -4153.969096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.43302 -40.25520 -39.82321 -38.24406 -37.69745 -34.75009 -34.37810 -33.48428 -32.85135 -31.20569 -31.11774 -29.50502 -27.99277 -25.73520 -25.23736 -24.19892 -23.50689 -22.07771 -21.72692 -20.29961 -19.31896 -19.22937 -18.35350 -17.85721 -17.63690 -17.13770 -16.36413 -15.66011 -15.47611 -15.17925 -15.01687 -14.67587 -14.47089 -14.11205 -13.90814 -13.59738 -13.16669 -12.98720 -12.93989 -12.80611 -12.61635 -12.23093 -12.13528 -11.93336 -11.87050 -11.73861 -11.25441 -10.82664 -10.53230 -10.44659 -10.30277 -10.03299 -9.66900 -9.36450 -9.15056 -8.63316 -8.55993 -7.72475 -7.48960 -7.20864 -4.77556 -0.30659 -0.03012 1.24515 1.35191 2.33522 2.51166 2.64523 2.74987 2.94985 3.32323 3.40263 3.55272 3.59954 3.69154 3.86426 4.00851 4.18361 4.29208 4.42979 4.48950 4.63444 4.65855 4.93077 5.03268 5.17736 5.23263 5.42908 5.52114 5.76920 5.85625 6.05248 6.42200 6.49882 6.52474 6.83606 7.08116 7.12906 7.14565 7.36520 7.45031 7.56157 7.61296 7.74246 8.10308 8.21784 8.37996 8.64646 9.39904 10.01262 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.003142 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.319192 B = 8909.949523 C =10178.654434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.112 3.888 3 C 0.027 3.973 4 N -0.242 5.242 5 N -0.075 5.075 6 N -0.177 5.177 7 C -0.042 4.042 8 C 0.604 3.396 9 O -0.490 6.490 10 N -0.635 5.635 11 C 0.385 3.615 12 C -0.311 4.311 13 C -0.036 4.036 14 C -0.274 4.274 15 C 0.273 3.727 16 C -0.474 4.474 17 H 0.084 0.916 18 C 0.044 3.956 19 N -0.804 5.804 20 Si 1.150 2.850 21 H -0.331 1.331 22 H -0.278 1.278 23 H -0.293 1.293 24 N -0.596 5.596 25 C 0.031 3.969 26 C 0.413 3.587 27 O -0.429 6.429 28 N -0.469 5.469 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.193 0.807 33 H 0.414 0.586 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.283 0.717 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.027 -0.031 5.798 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.013 4.013 3 C -0.102 4.102 4 N -0.015 5.015 5 N -0.052 5.052 6 N -0.041 5.041 7 C -0.194 4.194 8 C 0.387 3.613 9 O -0.363 6.363 10 N -0.279 5.279 11 C 0.155 3.845 12 C -0.335 4.335 13 C -0.060 4.060 14 C -0.296 4.296 15 C 0.149 3.851 16 C -0.506 4.506 17 H 0.102 0.898 18 C -0.178 4.178 19 N -0.426 5.426 20 Si 0.985 3.015 21 H -0.265 1.265 22 H -0.206 1.206 23 H -0.221 1.221 24 N -0.322 5.322 25 C -0.100 4.100 26 C 0.211 3.789 27 O -0.236 6.236 28 N -0.194 5.194 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.209 0.791 33 H 0.250 0.750 34 H 0.164 0.836 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -26.526 2.471 4.837 27.076 hybrid contribution 1.024 -2.322 0.617 2.612 sum -25.501 0.149 5.455 26.079 Atomic orbital electron populations 1.20721 0.85471 1.04852 1.04276 1.20798 0.98341 0.85354 0.96768 1.22483 0.78819 1.02651 1.06197 1.48029 1.07442 1.06804 1.39222 1.82340 0.88056 1.06054 1.28707 1.74250 1.15649 1.06906 1.07246 1.21366 0.91619 0.90289 1.16105 1.16307 0.80908 0.86511 0.77542 1.90739 1.83462 1.13795 1.48296 1.42928 1.04034 1.11217 1.69771 1.18029 0.85905 0.87357 0.93223 1.21692 1.01899 0.92540 1.17403 1.20943 0.92531 0.97737 0.94760 1.21629 0.97619 0.96908 1.13486 1.18272 0.90344 0.88284 0.88237 1.20730 0.95882 0.95698 1.38324 0.89806 1.27778 1.01508 0.99439 0.89028 1.70650 1.03533 1.40975 1.27460 0.81905 0.72391 0.69595 0.77582 1.26471 1.20615 1.22107 1.66012 1.00060 1.38026 1.28081 1.20893 0.93486 0.88960 1.06623 1.18696 0.85449 0.84708 0.90056 1.84863 1.74305 1.30140 1.34303 1.67961 1.07974 1.29327 1.14143 0.89232 0.89584 0.89099 0.79050 0.74974 0.83636 0.87489 0.87642 0.90584 0.72047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 10.14 36.00 0.37 0.10 16 2 C 0.11 0.77 6.71 -83.00 -0.56 0.21 16 3 C 0.03 0.19 10.83 -16.59 -0.18 0.01 16 4 N -0.24 -2.77 3.98 -10.48 -0.04 -2.81 16 5 N -0.07 -1.03 13.83 60.35 0.83 -0.20 16 6 N -0.18 -2.75 11.97 33.24 0.40 -2.35 16 7 C -0.04 -0.65 7.08 -82.86 -0.59 -1.24 16 8 C 0.60 10.60 7.69 -12.71 -0.10 10.50 16 9 O -0.49 -8.76 10.67 -17.86 -0.19 -8.95 16 10 N -0.64 -12.60 5.41 -12.50 -0.07 -12.67 16 11 C 0.39 8.91 7.50 -155.06 -1.16 7.74 16 12 C -0.31 -6.76 8.89 -38.89 -0.35 -7.11 16 13 C -0.04 -0.76 10.15 -39.39 -0.40 -1.16 16 14 C -0.27 -6.48 9.83 -38.65 -0.38 -6.86 16 15 C 0.27 7.20 6.40 -85.00 -0.54 6.66 16 16 C -0.47 -13.02 9.57 -37.74 -0.36 -13.38 16 17 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 18 C 0.04 1.21 5.52 -17.35 -0.10 1.11 16 19 N -0.80 -22.17 13.65 55.55 0.76 -21.41 16 20 Si 1.15 28.70 25.61 -169.99 -4.35 24.34 16 21 H -0.33 -8.19 7.11 56.52 0.40 -7.79 16 22 H -0.28 -6.93 6.61 56.52 0.37 -6.56 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 N -0.60 -15.35 4.54 -10.27 -0.05 -15.40 16 25 C 0.03 0.41 6.81 -83.97 -0.57 -0.17 16 26 C 0.41 4.71 7.84 -16.55 -0.13 4.58 16 27 O -0.43 -4.92 10.81 -41.38 -0.45 -5.36 16 28 N -0.47 -4.55 10.38 -9.55 -0.10 -4.65 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.05 8.06 -51.93 -0.42 -0.37 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.19 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.41 7.84 8.52 -40.82 -0.35 7.49 16 34 H 0.15 2.95 5.17 -52.92 -0.27 2.67 16 35 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 37 H 0.28 7.43 8.72 -40.82 -0.36 7.08 16 38 H 0.42 3.06 8.91 45.56 0.41 3.47 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -33.59 334.53 -5.61 -39.21 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.35 Total: 4.21 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -5.05 Total: 1.00 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 1.74 Total: -59.48 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.64 Total: -14.32 kcal Atomic # 14 Polarization: 28.70 SS G_CDS: -4.35 Total: 24.34 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.59 -5.61 -39.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644420680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.241 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds