Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08996 * 110.88681 * 302.57294 * 11 10 9 13 13 C 1.55159 * 111.00328 * 66.45684 * 11 10 9 14 14 C 1.54324 * 102.94333 * 153.57938 * 13 11 10 15 15 N 1.47024 * 107.26681 * 337.80338 * 14 13 11 16 16 C 1.34776 * 125.64363 * 178.89761 * 15 14 13 17 17 O 1.21283 * 119.99935 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00330 * 0.02562 * 16 15 14 19 19 C 1.50695 * 109.47421 * 180.02562 * 18 16 15 20 20 C 1.38239 * 120.00972 * 99.99667 * 19 18 16 21 21 C 1.38216 * 120.04954 * 180.02562 * 20 19 18 22 22 C 1.38256 * 120.06620 * 0.02562 * 21 20 19 23 23 C 1.38285 * 120.00914 * 359.97347 * 22 21 20 24 24 Cl 1.73596 * 120.02486 * 179.97438 * 23 22 21 25 25 C 1.38401 * 120.00696 * 279.72546 * 19 18 16 26 26 F 1.35102 * 120.02893 * 359.97438 * 25 19 18 27 27 C 1.47419 * 108.70634 * 358.94381 * 15 14 13 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 32 32 H 1.09004 * 110.71465 * 271.93928 * 13 11 10 33 33 H 1.08996 * 110.72622 * 35.20996 * 13 11 10 34 34 H 1.09003 * 109.88379 * 97.22077 * 14 13 11 35 35 H 1.08996 * 109.87998 * 218.22956 * 14 13 11 36 36 H 1.09011 * 109.46588 * 299.99852 * 18 16 15 37 37 H 1.08997 * 109.47150 * 59.99502 * 18 16 15 38 38 H 1.07998 * 119.97579 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.97057 * 179.97438 * 21 20 19 40 40 H 1.07996 * 119.99856 * 179.97438 * 22 21 20 41 41 H 1.09005 * 110.36514 * 265.28744 * 27 15 14 42 42 H 1.08998 * 110.36722 * 142.96943 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3942 -4.7628 0.8474 13 6 0.2630 -4.8603 -1.3392 14 6 -0.1197 -6.3499 -1.4668 15 7 0.8349 -7.1169 -0.6532 16 6 0.8267 -8.4541 -0.4851 17 8 1.6665 -8.9828 0.2122 18 6 -0.2259 -9.2925 -1.1635 19 6 -0.0141 -10.7433 -0.8151 20 6 -0.7839 -11.3380 0.1670 21 6 -0.5900 -12.6685 0.4875 22 6 0.3744 -13.4066 -0.1731 23 6 1.1459 -12.8143 -1.1561 24 17 2.3574 -13.7406 -1.9854 25 6 0.9473 -11.4821 -1.4824 26 9 1.6961 -10.9034 -2.4467 27 6 1.8017 -6.1811 -0.0509 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6849 -3.7105 -0.8952 31 1 2.6843 -3.7187 0.8848 32 1 -0.6290 -4.2374 -1.2709 33 1 0.8883 -4.5497 -2.1762 34 1 -1.1326 -6.5056 -1.0952 35 1 -0.0557 -6.6610 -2.5094 36 1 -1.2137 -8.9786 -0.8258 37 1 -0.1530 -9.1633 -2.2433 38 1 -1.5368 -10.7625 0.6849 39 1 -1.1918 -13.1317 1.2554 40 1 0.5253 -14.4460 0.0785 41 1 2.6963 -6.1096 -0.6696 42 1 2.0618 -6.5015 0.9579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662691210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -51.071312 kcal Electronic energy + Delta-G solvation = -26212.791499 eV Core-core repulsion = 22133.197293 eV Total energy + Delta-G solvation = -4079.594206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.23883 -40.35689 -39.35271 -37.67080 -36.88516 -34.71445 -33.34184 -32.20766 -30.82066 -30.28568 -29.25820 -28.05784 -25.29843 -23.35955 -23.21365 -22.48555 -22.14487 -20.05586 -19.32090 -18.03925 -17.40711 -17.21434 -16.99436 -16.62892 -16.09684 -15.97541 -15.33271 -14.91247 -14.74595 -14.35886 -13.96813 -13.75274 -13.67824 -13.49917 -13.33826 -13.15760 -12.98825 -12.72802 -12.49534 -12.48242 -12.02353 -11.84278 -11.80885 -11.66523 -11.29516 -11.20553 -10.86490 -10.70062 -10.53126 -10.41653 -10.12001 -9.99454 -9.71642 -9.23756 -9.05464 -8.89932 -8.67357 -6.95647 -5.79576 -3.08203 0.57459 0.63800 1.63439 2.51987 2.79279 3.13799 3.42974 3.47419 3.48291 3.71729 4.03107 4.31218 4.38432 4.56767 4.58888 4.66365 4.71585 4.81154 4.90868 5.02376 5.07263 5.22901 5.27367 5.41909 5.46645 5.54158 5.54374 5.61719 5.69789 5.85550 5.86570 6.00220 6.00840 6.09107 6.16664 6.26649 6.36160 6.41165 6.69358 6.81538 7.45037 7.67582 8.05379 8.39486 9.50877 10.07445 10.42513 11.43246 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.031551 B = 0.001868 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.243129 B =14982.035941 C =15333.796192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.120 4.120 14 C 0.096 3.904 15 N -0.615 5.615 16 C 0.530 3.470 17 O -0.537 6.537 18 C -0.099 4.099 19 C -0.088 4.088 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.085 4.085 23 C -0.074 4.074 24 Cl -0.052 7.052 25 C 0.128 3.872 26 F -0.123 7.123 27 C 0.113 3.887 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.070 0.930 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 -28.584 -3.123 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.158 4.158 14 C -0.026 4.026 15 N -0.349 5.349 16 C 0.317 3.683 17 O -0.414 6.414 18 C -0.139 4.139 19 C -0.089 4.089 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.103 4.103 23 C -0.101 4.101 24 Cl -0.023 7.023 25 C 0.108 3.892 26 F -0.101 7.101 27 C -0.009 4.009 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.089 0.911 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.229 -28.881 -2.863 29.330 hybrid contribution 0.386 1.046 -0.314 1.159 sum -3.843 -27.835 -3.177 28.278 Atomic orbital electron populations 1.69645 1.05094 1.25788 1.57755 1.24737 0.95552 0.97707 1.02984 0.86252 0.78513 0.83448 0.77879 1.21265 1.21697 1.21256 1.19185 0.91043 0.84113 1.42763 0.91208 1.42289 1.05836 0.99794 1.89572 1.20550 0.92764 0.84888 0.98212 1.22565 0.98095 0.93683 0.98131 0.89740 1.22641 1.01692 0.93010 0.98492 1.22193 0.92644 0.92869 0.94933 1.48517 1.31677 1.05407 1.49324 1.19950 0.85810 0.80913 0.81576 1.90735 1.39615 1.71324 1.39676 1.20596 1.00219 0.90047 1.03009 1.19333 0.96680 0.95028 0.97871 1.21050 0.98413 0.95020 0.94865 1.21137 0.98226 0.94014 1.00157 1.20986 0.94473 1.00886 0.93988 1.20954 0.97386 0.91517 1.00280 1.98390 1.54039 1.72474 1.77381 1.17183 0.92463 0.89762 0.89833 1.91542 1.74294 1.84265 1.60026 1.22272 0.91863 0.87867 0.98926 0.93468 0.78240 0.95961 0.95986 0.89366 0.90119 0.91363 0.91415 0.86983 0.87386 0.84272 0.84180 0.83979 0.91136 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.81 5.45 -59.90 -0.33 -18.13 16 10 C 0.16 3.15 5.71 -4.04 -0.02 3.13 16 11 C -0.11 -1.59 3.10 -88.47 -0.27 -1.87 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.12 -1.60 6.13 -24.90 -0.15 -1.75 16 14 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 15 N -0.62 -7.84 3.33 -170.52 -0.57 -8.40 16 16 C 0.53 6.99 7.84 -10.98 -0.09 6.91 16 17 O -0.54 -9.15 16.21 5.56 0.09 -9.05 16 18 C -0.10 -0.91 4.75 -29.04 -0.14 -1.04 16 19 C -0.09 -0.87 4.43 -104.56 -0.46 -1.33 16 20 C -0.08 -0.58 9.67 -39.59 -0.38 -0.96 16 21 C -0.12 -0.77 10.04 -39.58 -0.40 -1.17 16 22 C -0.08 -0.64 9.83 -39.56 -0.39 -1.03 16 23 C -0.07 -0.74 6.33 -39.43 -0.25 -0.99 16 24 Cl -0.05 -0.51 28.62 -51.86 -1.48 -2.00 16 25 C 0.13 1.46 7.11 -39.39 -0.28 1.18 16 26 F -0.12 -1.59 16.23 2.25 0.04 -1.55 16 27 C 0.11 1.60 6.38 -2.53 -0.02 1.58 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.38 9.70 7.53 -40.82 -0.31 9.40 16 30 H 0.02 0.43 8.11 -51.92 -0.42 0.01 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.70 8.00 -51.92 -0.42 0.29 16 37 H 0.11 0.86 7.94 -51.93 -0.41 0.45 16 38 H 0.14 0.74 8.04 -52.49 -0.42 0.32 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 42 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -33.39 373.72 -9.77 -43.16 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.73 Total: 3.71 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.12 Total: -3.59 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.17 Total: -53.44 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.39 -9.77 -43.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662691210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.916 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds