Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08996 * 110.88681 * 302.57294 * 11 10 9 13 13 C 1.55159 * 111.00328 * 66.45684 * 11 10 9 14 14 C 1.54324 * 102.94333 * 153.57938 * 13 11 10 15 15 N 1.47024 * 107.26681 * 337.80338 * 14 13 11 16 16 C 1.34776 * 125.64363 * 178.89761 * 15 14 13 17 17 O 1.21283 * 119.99935 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00330 * 0.02562 * 16 15 14 19 19 C 1.50695 * 109.47421 * 180.02562 * 18 16 15 20 20 C 1.38239 * 120.00972 * 99.99667 * 19 18 16 21 21 C 1.38216 * 120.04954 * 180.02562 * 20 19 18 22 22 C 1.38256 * 120.06620 * 0.02562 * 21 20 19 23 23 C 1.38285 * 120.00914 * 359.97347 * 22 21 20 24 24 Cl 1.73596 * 120.02486 * 179.97438 * 23 22 21 25 25 C 1.38401 * 120.00696 * 279.72546 * 19 18 16 26 26 F 1.35102 * 120.02893 * 359.97438 * 25 19 18 27 27 C 1.47419 * 108.70634 * 358.94381 * 15 14 13 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 32 32 H 1.09004 * 110.71465 * 271.93928 * 13 11 10 33 33 H 1.08996 * 110.72622 * 35.20996 * 13 11 10 34 34 H 1.09003 * 109.88379 * 97.22077 * 14 13 11 35 35 H 1.08996 * 109.87998 * 218.22956 * 14 13 11 36 36 H 1.09011 * 109.46588 * 299.99852 * 18 16 15 37 37 H 1.08997 * 109.47150 * 59.99502 * 18 16 15 38 38 H 1.07998 * 119.97579 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.97057 * 179.97438 * 21 20 19 40 40 H 1.07996 * 119.99856 * 179.97438 * 22 21 20 41 41 H 1.09005 * 110.36514 * 265.28744 * 27 15 14 42 42 H 1.08998 * 110.36722 * 142.96943 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3942 -4.7628 0.8474 13 6 0.2630 -4.8603 -1.3392 14 6 -0.1197 -6.3499 -1.4668 15 7 0.8349 -7.1169 -0.6532 16 6 0.8267 -8.4541 -0.4851 17 8 1.6665 -8.9828 0.2122 18 6 -0.2259 -9.2925 -1.1635 19 6 -0.0141 -10.7433 -0.8151 20 6 -0.7839 -11.3380 0.1670 21 6 -0.5900 -12.6685 0.4875 22 6 0.3744 -13.4066 -0.1731 23 6 1.1459 -12.8143 -1.1561 24 17 2.3574 -13.7406 -1.9854 25 6 0.9473 -11.4821 -1.4824 26 9 1.6961 -10.9034 -2.4467 27 6 1.8017 -6.1811 -0.0509 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6849 -3.7105 -0.8952 31 1 2.6843 -3.7187 0.8848 32 1 -0.6290 -4.2374 -1.2709 33 1 0.8883 -4.5497 -2.1762 34 1 -1.1326 -6.5056 -1.0952 35 1 -0.0557 -6.6610 -2.5094 36 1 -1.2137 -8.9786 -0.8258 37 1 -0.1530 -9.1633 -2.2433 38 1 -1.5368 -10.7625 0.6849 39 1 -1.1918 -13.1317 1.2554 40 1 0.5253 -14.4460 0.0785 41 1 2.6963 -6.1096 -0.6696 42 1 2.0618 -6.5015 0.9579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662691210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -70.617645 kcal Electronic energy + Delta-G solvation = -26213.639092 eV Core-core repulsion = 22133.197293 eV Total energy + Delta-G solvation = -4080.441799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.06412 -41.30483 -40.08625 -38.79234 -37.60827 -36.43476 -34.22187 -33.69485 -31.85675 -31.42763 -30.35055 -28.98215 -26.87915 -24.65132 -23.93505 -23.86364 -22.95399 -21.35841 -20.27375 -19.15917 -18.74806 -18.26115 -17.91173 -17.49361 -17.04653 -16.82395 -16.53964 -16.24592 -15.64551 -15.47954 -15.35522 -14.98898 -14.78751 -14.53205 -14.44039 -14.08778 -14.02217 -13.88597 -13.75239 -13.34678 -13.01690 -12.93529 -12.73234 -12.70866 -12.49197 -12.42997 -12.24927 -12.13316 -11.98214 -11.78186 -11.67222 -11.60410 -11.07040 -10.91760 -9.88624 -9.72392 -9.69733 -8.98739 -7.94453 -5.22598 -0.04389 0.00003 0.94690 1.48796 1.51041 1.55001 1.57150 1.90268 2.46219 2.56947 3.05859 3.35272 3.38172 3.41549 3.65355 3.77524 3.79270 3.90675 3.99674 4.16058 4.26578 4.29190 4.31885 4.43445 4.46491 4.56665 4.62973 4.64678 4.80545 4.84381 4.89603 4.93745 5.02101 5.07601 5.15883 5.22418 5.26483 5.28915 5.41490 5.50699 5.69974 6.28069 6.47777 7.06412 7.35375 8.09730 8.34975 9.28534 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.031551 B = 0.001868 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.243129 B =14982.035941 C =15333.796192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.740 5.740 10 C 0.163 3.837 11 C -0.095 4.095 12 H 0.081 0.919 13 C -0.118 4.118 14 C 0.102 3.898 15 N -0.616 5.616 16 C 0.525 3.475 17 O -0.582 6.582 18 C -0.092 4.092 19 C -0.103 4.103 20 C -0.076 4.076 21 C -0.108 4.108 22 C -0.085 4.085 23 C -0.092 4.092 24 Cl -0.062 7.062 25 C 0.094 3.906 26 F -0.142 7.142 27 C 0.119 3.881 28 H 0.252 0.748 29 H 0.377 0.623 30 H 0.024 0.976 31 H 0.017 0.983 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.165 0.835 41 H 0.066 0.934 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -29.715 -2.855 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.383 5.383 10 C 0.037 3.963 11 C -0.115 4.115 12 H 0.099 0.901 13 C -0.156 4.156 14 C -0.019 4.019 15 N -0.349 5.349 16 C 0.315 3.685 17 O -0.463 6.463 18 C -0.131 4.131 19 C -0.105 4.105 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.104 4.104 23 C -0.119 4.119 24 Cl -0.033 7.033 25 C 0.074 3.926 26 F -0.121 7.121 27 C -0.005 4.005 28 H 0.061 0.939 29 H 0.210 0.790 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.185 0.815 39 H 0.194 0.806 40 H 0.182 0.818 41 H 0.084 0.916 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.655 -30.034 -2.614 30.673 hybrid contribution 0.858 1.326 -0.344 1.617 sum -4.797 -28.707 -2.959 29.255 Atomic orbital electron populations 1.69787 1.06382 1.26155 1.59284 1.25517 0.96442 1.00900 1.03645 0.85245 0.77249 0.79361 0.78089 1.20484 1.22026 1.20654 1.19565 0.91446 0.85426 1.41487 0.90969 1.42436 1.05713 1.00741 1.89409 1.20644 0.93456 0.84503 0.97746 1.22337 0.97335 0.92516 0.99283 0.90095 1.22579 1.00933 0.95310 0.96757 1.22291 0.93284 0.90205 0.96149 1.48592 1.31622 1.05484 1.49247 1.20698 0.85993 0.80845 0.80916 1.90712 1.41603 1.72087 1.41859 1.20661 1.00219 0.88931 1.03262 1.19568 0.96938 0.95377 0.98570 1.21476 0.98287 0.95751 0.93883 1.21603 0.97474 0.93609 0.99917 1.21363 0.93943 1.02082 0.92965 1.21216 0.98007 0.91405 1.01288 1.98377 1.54623 1.72531 1.77773 1.17598 0.93622 0.90699 0.90693 1.91479 1.75016 1.84647 1.60930 1.22056 0.92137 0.87666 0.98596 0.93938 0.79015 0.95856 0.96477 0.89801 0.91106 0.88447 0.89083 0.83398 0.86239 0.81531 0.80644 0.81780 0.91559 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.55 13.06 21.65 0.28 -57.27 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -36.34 5.45 -343.44 -1.87 -38.21 16 10 C 0.16 6.32 5.71 86.38 0.49 6.81 16 11 C -0.10 -2.84 3.10 -9.40 -0.03 -2.87 16 12 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 13 C -0.12 -2.99 6.13 31.78 0.19 -2.79 16 14 C 0.10 1.86 6.49 86.73 0.56 2.42 16 15 N -0.62 -14.70 3.33 -811.80 -2.70 -17.40 16 16 C 0.53 13.13 7.84 87.66 0.69 13.82 16 17 O -0.58 -19.79 16.21 -3.04 -0.05 -19.84 16 18 C -0.09 -1.44 4.75 29.10 0.14 -1.30 16 19 C -0.10 -1.86 4.43 -19.83 -0.09 -1.95 16 20 C -0.08 -0.93 9.67 22.26 0.22 -0.71 16 21 C -0.11 -1.06 10.04 22.27 0.22 -0.84 16 22 C -0.09 -1.11 9.83 22.29 0.22 -0.90 16 23 C -0.09 -1.80 6.33 22.37 0.14 -1.66 16 24 Cl -0.06 -1.24 28.62 -2.72 -0.08 -1.31 16 25 C 0.09 2.11 7.11 22.39 0.16 2.27 16 26 F -0.14 -3.77 16.23 44.97 0.73 -3.04 16 27 C 0.12 3.31 6.38 86.86 0.55 3.87 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.38 19.30 7.53 -92.71 -0.70 18.60 16 30 H 0.02 0.91 8.11 -2.38 -0.02 0.89 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 1.94 8.01 -2.39 -0.02 1.92 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.15 1.20 8.00 -2.38 -0.02 1.18 16 37 H 0.12 1.61 7.94 -2.39 -0.02 1.59 16 38 H 0.17 1.03 8.04 -2.91 -0.02 1.01 16 39 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 40 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.07 1.89 8.04 -2.38 -0.02 1.87 16 42 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -73.97 373.72 3.46 -70.51 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.35 Total: 19.20 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 4.78 Total: -0.25 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -4.29 Total: -112.88 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.73 Total: -3.04 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.31 kcal Total: -73.97 3.46 -70.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662691210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.106 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds