Wall clock time and date at job start Sat Apr 11 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.02125 * 54.29171 * 11 10 9 13 13 C 1.54269 * 110.03237 * 292.90530 * 11 10 9 14 14 C 1.54959 * 104.16159 * 217.13569 * 13 11 10 15 15 C 1.54884 * 102.77908 * 37.88734 * 14 13 11 16 16 C 1.53878 * 110.03499 * 175.69033 * 11 10 9 17 17 H 1.08998 * 110.03110 * 238.56874 * 16 11 10 18 18 N 1.46495 * 110.03040 * 359.97438 * 16 11 10 19 19 C 1.34777 * 120.00028 * 205.00017 * 18 16 11 20 20 O 1.21567 * 119.99921 * 0.02562 * 19 18 16 21 21 C 1.47698 * 120.00078 * 180.02562 * 19 18 16 22 22 C 1.39660 * 120.15755 * 359.72709 * 21 19 18 23 23 C 1.37968 * 119.86078 * 179.69724 * 22 21 19 24 24 Cl 1.73597 * 119.90365 * 180.27322 * 23 22 21 25 25 C 1.38568 * 120.19013 * 0.60263 * 23 22 21 26 26 C 1.38195 * 120.32894 * 359.67203 * 25 23 22 27 27 C 1.38314 * 120.12974 * 0.02562 * 26 25 23 28 28 F 1.35102 * 120.10006 * 179.97438 * 27 26 25 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 32 32 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 33 33 H 1.09003 * 110.48786 * 335.78526 * 13 11 10 34 34 H 1.09006 * 110.48690 * 98.42359 * 13 11 10 35 35 H 1.08998 * 110.72192 * 279.57517 * 14 13 11 36 36 H 1.09002 * 110.76852 * 156.22186 * 14 13 11 37 37 H 1.09004 * 110.48973 * 203.40665 * 15 14 13 38 38 H 1.09009 * 110.48946 * 80.76307 * 15 14 13 39 39 H 0.97000 * 120.00258 * 25.00429 * 18 16 11 40 40 H 1.07998 * 120.06845 * 359.97438 * 22 21 19 41 41 H 1.08003 * 119.83444 * 179.69729 * 25 23 22 42 42 H 1.07994 * 119.93472 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8741 -1.5353 0.8326 13 6 6.0329 -1.5400 -1.3340 14 6 7.4235 -2.1528 -1.6372 15 6 7.2625 -3.6187 -1.1636 16 6 6.3981 -3.5121 0.1097 17 1 7.0357 -3.4970 0.9936 18 7 5.4677 -4.6414 0.1812 19 6 5.8500 -5.7936 0.7666 20 8 6.9668 -5.8956 1.2358 21 6 4.9121 -6.9323 0.8382 22 6 3.6263 -6.8168 0.3053 23 6 2.7573 -7.8865 0.3700 24 17 1.1613 -7.7465 -0.2983 25 6 3.1525 -9.0699 0.9728 26 6 4.4210 -9.1909 1.5077 27 6 5.3052 -8.1292 1.4448 28 9 6.5450 -8.2479 1.9684 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8486 -3.0425 0.8909 32 1 3.8493 -3.0422 -0.8891 33 1 5.3235 -1.7960 -2.1210 34 1 6.1077 -0.4581 -1.2238 35 1 8.2012 -1.6457 -1.0662 36 1 7.6388 -2.1133 -2.7050 37 1 8.2345 -4.0529 -0.9295 38 1 6.7518 -4.2111 -1.9229 39 1 4.5764 -4.5599 -0.1929 40 1 3.3145 -5.8936 -0.1603 41 1 2.4659 -9.9020 1.0246 42 1 4.7225 -10.1163 1.9757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667738728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:18 Heat of formation + Delta-G solvation = -48.298840 kcal Electronic energy + Delta-G solvation = -27208.497825 eV Core-core repulsion = 23129.023842 eV Total energy + Delta-G solvation = -4079.473983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.12684 -40.54154 -39.17953 -37.93870 -36.64146 -34.60044 -33.90143 -31.82502 -31.60660 -30.60616 -29.07749 -27.67393 -24.85092 -24.44497 -23.03818 -22.23643 -21.07670 -20.58790 -19.31517 -18.59147 -17.62618 -17.52652 -16.89431 -16.14560 -16.01695 -15.73510 -15.24054 -14.94583 -14.89302 -14.44175 -14.25542 -13.95254 -13.73353 -13.68204 -13.51170 -13.27726 -12.89862 -12.71070 -12.35222 -11.97794 -11.91116 -11.68240 -11.51750 -11.30032 -11.03599 -11.00136 -10.94169 -10.57989 -10.55124 -10.39953 -10.11853 -10.02569 -9.69061 -9.64297 -9.11419 -8.96180 -8.89803 -7.30358 -5.82019 -3.18317 0.23805 0.58237 1.76283 2.48158 2.98113 3.29454 3.33566 3.36574 3.42194 3.76173 4.14349 4.23774 4.51380 4.54811 4.62266 4.67764 4.71622 4.94648 5.04221 5.20104 5.25910 5.42193 5.45887 5.50497 5.51947 5.54046 5.59194 5.65011 5.70837 5.73501 5.83224 5.94742 6.01861 6.14171 6.18230 6.26172 6.38385 6.44654 6.53717 6.62310 7.39185 7.92099 8.07580 8.36519 9.15031 9.87467 10.06828 11.36070 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.003794 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.986748 B = 7378.261803 C = 9649.817201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.160 3.840 11 C -0.113 4.113 12 H 0.083 0.917 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.150 3.850 17 H 0.093 0.907 18 N -0.713 5.713 19 C 0.558 3.442 20 O -0.527 6.527 21 C -0.159 4.159 22 C -0.047 4.047 23 C -0.056 4.056 24 Cl -0.048 7.048 25 C -0.057 4.057 26 C -0.153 4.153 27 C 0.163 3.837 28 F -0.110 7.110 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.030 0.970 32 H 0.024 0.976 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.407 0.593 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.009 -17.768 -1.032 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.397 5.397 10 C 0.032 3.968 11 C -0.132 4.132 12 H 0.102 0.898 13 C -0.153 4.153 14 C -0.162 4.162 15 C -0.171 4.171 16 C 0.046 3.954 17 H 0.111 0.889 18 N -0.368 5.368 19 C 0.344 3.656 20 O -0.404 6.404 21 C -0.163 4.163 22 C -0.066 4.066 23 C -0.082 4.082 24 Cl -0.018 7.018 25 C -0.076 4.076 26 C -0.172 4.172 27 C 0.142 3.858 28 F -0.088 7.088 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.247 0.753 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.463 -17.883 -0.736 21.254 hybrid contribution 0.010 1.295 -0.115 1.300 sum 11.473 -16.588 -0.852 20.188 Atomic orbital electron populations 1.69701 1.05109 1.25891 1.57253 1.24658 0.95206 0.97204 1.01814 0.86569 0.79257 0.85006 0.77825 1.21067 1.20244 1.21704 1.19027 0.80522 0.94749 1.43447 0.89214 1.42655 1.04007 1.01989 1.91021 1.20674 0.88123 0.89909 0.98053 1.22286 0.96562 0.95216 0.99150 0.89818 1.22422 0.96132 0.99940 0.96826 1.22490 0.97679 0.95116 1.00874 1.22775 0.99952 0.97375 0.96983 1.21678 0.90308 0.84266 0.99194 0.88882 1.46298 1.18572 1.12704 1.59183 1.17865 0.86600 0.82488 0.78606 1.90828 1.20361 1.82353 1.46845 1.20056 0.95696 0.95103 1.05473 1.21219 0.90770 0.98613 0.95996 1.20836 0.88848 0.95833 1.02732 1.98428 1.21577 1.98072 1.83770 1.21115 0.95611 0.96581 0.94277 1.21108 0.93356 0.99162 1.03606 1.17729 0.80923 0.93227 0.93924 1.91618 1.38137 1.96037 1.83006 0.93009 0.80504 0.95267 0.95792 0.90688 0.91463 0.91473 0.91446 0.91237 0.91141 0.75349 0.83283 0.83348 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.97 55.49 0.78 -27.91 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.25 -6.75 10.47 -15.06 -0.16 -6.91 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 9 N -0.75 -16.92 5.24 -59.91 -0.31 -17.23 16 10 C 0.16 2.82 4.18 -4.05 -0.02 2.80 16 11 C -0.11 -1.62 2.97 -89.50 -0.27 -1.88 16 12 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.12 -1.54 6.05 -25.03 -0.15 -1.70 16 14 C -0.12 -1.36 6.91 -24.70 -0.17 -1.53 16 15 C -0.13 -1.54 6.53 -25.08 -0.16 -1.70 16 16 C 0.15 1.97 3.22 -66.81 -0.22 1.75 16 17 H 0.09 1.30 7.56 -51.93 -0.39 0.90 16 18 N -0.71 -9.28 4.35 -53.71 -0.23 -9.52 16 19 C 0.56 7.91 7.77 -12.40 -0.10 7.81 16 20 O -0.53 -8.99 14.99 5.31 0.08 -8.92 16 21 C -0.16 -1.92 5.88 -104.91 -0.62 -2.54 16 22 C -0.05 -0.50 9.31 -39.15 -0.36 -0.86 16 23 C -0.06 -0.54 6.31 -39.56 -0.25 -0.79 16 24 Cl -0.05 -0.49 28.95 -51.86 -1.50 -1.99 16 25 C -0.06 -0.44 9.82 -39.48 -0.39 -0.83 16 26 C -0.15 -1.25 10.01 -39.57 -0.40 -1.64 16 27 C 0.16 1.85 7.28 -38.96 -0.28 1.57 16 28 F -0.11 -1.47 15.55 2.25 0.04 -1.44 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.36 8.03 5.39 -40.82 -0.22 7.81 16 31 H 0.03 0.53 7.46 -51.93 -0.39 0.14 16 32 H 0.02 0.41 7.08 -51.93 -0.37 0.05 16 33 H 0.07 1.08 7.77 -51.93 -0.40 0.68 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.81 8.05 -51.92 -0.42 0.39 16 39 H 0.41 5.00 3.92 -40.82 -0.16 4.84 16 40 H 0.15 1.52 6.40 -52.49 -0.34 1.19 16 41 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -32.60 360.59 -9.31 -41.91 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.24 Total: 9.08 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.63 Total: -6.32 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.23 Total: -54.66 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.60 -9.31 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667738728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.387 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds