Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.02125 * 54.29171 * 11 10 9 13 13 C 1.54269 * 110.03237 * 292.90530 * 11 10 9 14 14 C 1.54959 * 104.16159 * 217.13569 * 13 11 10 15 15 C 1.54884 * 102.77908 * 37.88734 * 14 13 11 16 16 C 1.53878 * 110.03499 * 175.69033 * 11 10 9 17 17 H 1.08998 * 110.03110 * 238.56874 * 16 11 10 18 18 N 1.46495 * 110.03040 * 359.97438 * 16 11 10 19 19 C 1.34777 * 120.00028 * 205.00017 * 18 16 11 20 20 O 1.21567 * 119.99921 * 0.02562 * 19 18 16 21 21 C 1.47698 * 120.00078 * 180.02562 * 19 18 16 22 22 C 1.39660 * 120.15755 * 359.72709 * 21 19 18 23 23 C 1.37968 * 119.86078 * 179.69724 * 22 21 19 24 24 Cl 1.73597 * 119.90365 * 180.27322 * 23 22 21 25 25 C 1.38568 * 120.19013 * 0.60263 * 23 22 21 26 26 C 1.38195 * 120.32894 * 359.67203 * 25 23 22 27 27 C 1.38314 * 120.12974 * 0.02562 * 26 25 23 28 28 F 1.35102 * 120.10006 * 179.97438 * 27 26 25 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 32 32 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 33 33 H 1.09003 * 110.48786 * 335.78526 * 13 11 10 34 34 H 1.09006 * 110.48690 * 98.42359 * 13 11 10 35 35 H 1.08998 * 110.72192 * 279.57517 * 14 13 11 36 36 H 1.09002 * 110.76852 * 156.22186 * 14 13 11 37 37 H 1.09004 * 110.48973 * 203.40665 * 15 14 13 38 38 H 1.09009 * 110.48946 * 80.76307 * 15 14 13 39 39 H 0.97000 * 120.00258 * 25.00429 * 18 16 11 40 40 H 1.07998 * 120.06845 * 359.97438 * 22 21 19 41 41 H 1.08003 * 119.83444 * 179.69729 * 25 23 22 42 42 H 1.07994 * 119.93472 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8741 -1.5353 0.8326 13 6 6.0329 -1.5400 -1.3340 14 6 7.4235 -2.1528 -1.6372 15 6 7.2625 -3.6187 -1.1636 16 6 6.3981 -3.5121 0.1097 17 1 7.0357 -3.4970 0.9936 18 7 5.4677 -4.6414 0.1812 19 6 5.8500 -5.7936 0.7666 20 8 6.9668 -5.8956 1.2358 21 6 4.9121 -6.9323 0.8382 22 6 3.6263 -6.8168 0.3053 23 6 2.7573 -7.8865 0.3700 24 17 1.1613 -7.7465 -0.2983 25 6 3.1525 -9.0699 0.9728 26 6 4.4210 -9.1909 1.5077 27 6 5.3052 -8.1292 1.4448 28 9 6.5450 -8.2479 1.9684 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8486 -3.0425 0.8909 32 1 3.8493 -3.0422 -0.8891 33 1 5.3235 -1.7960 -2.1210 34 1 6.1077 -0.4581 -1.2238 35 1 8.2012 -1.6457 -1.0662 36 1 7.6388 -2.1133 -2.7050 37 1 8.2345 -4.0529 -0.9295 38 1 6.7518 -4.2111 -1.9229 39 1 4.5764 -4.5599 -0.1929 40 1 3.3145 -5.8936 -0.1603 41 1 2.4659 -9.9020 1.0246 42 1 4.7225 -10.1163 1.9757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667738728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -67.749839 kcal Electronic energy + Delta-G solvation = -27209.341283 eV Core-core repulsion = 23129.023842 eV Total energy + Delta-G solvation = -4080.317442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.05128 -41.58973 -40.08993 -39.04670 -37.45488 -36.37602 -34.97471 -33.56490 -32.64731 -31.40470 -30.57964 -28.68939 -26.40042 -25.34962 -24.02857 -23.81553 -22.10100 -21.58743 -20.65552 -19.78332 -19.24679 -18.42294 -17.83735 -17.16644 -16.96089 -16.78122 -16.47197 -16.29568 -15.93668 -15.79729 -15.53915 -15.19894 -14.97759 -14.62226 -14.56360 -14.49523 -14.29797 -13.73397 -13.60030 -13.51046 -12.95344 -12.86174 -12.75272 -12.39253 -12.32880 -12.11906 -12.07600 -11.96791 -11.82242 -11.76285 -11.59489 -11.48702 -11.14294 -10.97295 -10.49426 -10.14233 -9.76118 -9.30009 -8.01538 -5.35236 -0.59099 -0.19385 0.97116 1.38741 1.41709 1.49003 1.55811 1.95864 2.38797 2.49323 2.95168 3.23386 3.30782 3.39195 3.49916 3.63510 3.75487 3.85311 3.91883 3.98468 4.27368 4.32326 4.42099 4.45200 4.48883 4.53064 4.58090 4.70002 4.73256 4.81858 4.85646 4.92709 4.94701 5.04964 5.18861 5.20404 5.29694 5.42300 5.45861 5.47053 5.76556 6.21626 6.31068 6.98922 7.08747 7.83991 8.02943 9.19567 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.003794 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.986748 B = 7378.261803 C = 9649.817201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.949 3.051 4 H -0.282 1.282 5 H -0.247 1.247 6 H -0.297 1.297 7 C -0.233 4.233 8 H 0.061 0.939 9 N -0.753 5.753 10 C 0.159 3.841 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.152 3.848 17 H 0.085 0.915 18 N -0.710 5.710 19 C 0.556 3.444 20 O -0.561 6.561 21 C -0.176 4.176 22 C -0.052 4.052 23 C -0.061 4.061 24 Cl -0.053 7.053 25 C -0.040 4.040 26 C -0.136 4.136 27 C 0.143 3.857 28 F -0.126 7.126 29 H 0.257 0.743 30 H 0.367 0.633 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.409 0.591 40 H 0.146 0.854 41 H 0.184 0.816 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.437 -18.595 -1.376 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.252 4.252 3 Si 0.777 3.223 4 H -0.208 1.208 5 H -0.171 1.171 6 H -0.224 1.224 7 C -0.364 4.364 8 H 0.079 0.921 9 N -0.399 5.399 10 C 0.032 3.968 11 C -0.124 4.124 12 H 0.102 0.898 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.047 3.953 17 H 0.103 0.897 18 N -0.363 5.363 19 C 0.344 3.656 20 O -0.442 6.442 21 C -0.181 4.181 22 C -0.071 4.071 23 C -0.088 4.088 24 Cl -0.024 7.024 25 C -0.059 4.059 26 C -0.154 4.154 27 C 0.123 3.877 28 F -0.105 7.105 29 H 0.066 0.934 30 H 0.200 0.800 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.164 0.836 41 H 0.201 0.799 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 12.932 -18.731 -1.095 22.788 hybrid contribution -0.500 1.394 0.012 1.481 sum 12.432 -17.337 -1.083 21.361 Atomic orbital electron populations 1.69879 1.07113 1.26604 1.59675 1.25452 0.96020 1.01105 1.02637 0.85489 0.78961 0.79891 0.77968 1.20827 1.17145 1.22429 1.19031 0.82576 0.93565 1.41240 0.92147 1.42648 1.02459 1.03945 1.90828 1.20822 0.90032 0.87945 0.97969 1.22203 0.94000 0.96087 1.00112 0.89751 1.22408 0.97378 1.00005 0.95558 1.22447 0.96406 0.94028 1.02081 1.22729 0.99623 0.98148 0.96020 1.21671 0.90202 0.83573 0.99849 0.89667 1.46290 1.18643 1.12595 1.58805 1.18192 0.86496 0.83046 0.77856 1.90798 1.21847 1.83029 1.48482 1.19932 0.95887 0.94962 1.07291 1.21174 0.90570 0.99110 0.96270 1.20975 0.88390 0.96370 1.03027 1.98430 1.21928 1.98134 1.83934 1.21509 0.95756 0.96533 0.92076 1.21446 0.92496 0.99196 1.02293 1.18093 0.80975 0.94063 0.94593 1.91574 1.39339 1.96140 1.83400 0.93414 0.80006 0.95779 0.94972 0.91751 0.91372 0.90229 0.89869 0.90997 0.91040 0.75059 0.83600 0.79918 0.79707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.91 13.97 21.65 0.30 -61.60 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 3 Si 0.95 44.36 27.74 68.60 1.90 46.26 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 6 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 7 C -0.23 -12.84 10.47 84.03 0.88 -11.96 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 9 N -0.75 -33.34 5.24 -343.47 -1.80 -35.14 16 10 C 0.16 5.51 4.18 86.38 0.36 5.87 16 11 C -0.10 -2.87 2.97 -10.07 -0.03 -2.90 16 12 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 13 C -0.12 -2.85 6.05 31.69 0.19 -2.66 16 14 C -0.11 -2.16 6.91 31.91 0.22 -1.94 16 15 C -0.13 -2.74 6.53 31.67 0.21 -2.54 16 16 C 0.15 3.86 3.22 45.72 0.15 4.01 16 17 H 0.09 2.34 7.56 -2.39 -0.02 2.32 16 18 N -0.71 -18.50 4.35 -442.12 -1.92 -20.42 16 19 C 0.56 16.00 7.77 86.74 0.67 16.67 16 20 O -0.56 -19.55 14.99 -3.93 -0.06 -19.61 16 21 C -0.18 -4.26 5.88 -20.05 -0.12 -4.38 16 22 C -0.05 -1.09 9.31 22.55 0.21 -0.88 16 23 C -0.06 -1.09 6.31 22.28 0.14 -0.95 16 24 Cl -0.05 -1.04 28.95 -2.72 -0.08 -1.12 16 25 C -0.04 -0.50 9.82 22.34 0.22 -0.28 16 26 C -0.14 -1.85 10.01 22.28 0.22 -1.62 16 27 C 0.14 3.15 7.28 22.67 0.17 3.31 16 28 F -0.13 -3.37 15.55 44.97 0.70 -2.67 16 29 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.37 15.55 5.39 -92.71 -0.50 15.05 16 31 H 0.02 0.88 7.46 -2.38 -0.02 0.86 16 32 H 0.03 1.09 7.08 -2.39 -0.02 1.07 16 33 H 0.06 1.73 7.77 -2.39 -0.02 1.72 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.07 1.54 8.05 -2.38 -0.02 1.52 16 39 H 0.41 10.14 3.92 -92.71 -0.36 9.78 16 40 H 0.15 3.05 6.40 -2.91 -0.02 3.03 16 41 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 42 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -71.84 360.59 3.15 -68.69 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.15 Total: 28.87 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 3.96 Total: -3.26 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -3.42 Total: -117.16 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.06 Total: -19.61 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.70 Total: -2.67 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -71.84 3.15 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667738728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.938 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds