Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48506 * 109.46679 * 239.99651 * 3 2 1 5 5 H 1.48498 * 109.47027 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47078 * 120.00089 * 3 2 1 7 7 C 1.38815 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00018 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47300 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.54271 * 307.61506 * 11 10 9 13 13 C 1.54898 * 110.48285 * 70.22596 * 11 10 9 14 14 C 1.54893 * 102.74742 * 156.62294 * 13 11 10 15 15 C 1.54270 * 104.19409 * 322.05443 * 14 13 11 16 16 C 1.53876 * 106.59613 * 23.61365 * 15 14 13 17 17 H 1.09003 * 110.03242 * 240.66160 * 16 15 14 18 18 N 1.46502 * 110.03091 * 119.28759 * 16 15 14 19 19 C 1.34775 * 120.00570 * 86.44938 * 18 16 15 20 20 O 1.21570 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.47690 * 120.00415 * 179.97438 * 19 18 16 22 22 C 1.39661 * 120.15855 * 0.02562 * 21 19 18 23 23 C 1.37964 * 119.86239 * 179.97438 * 22 21 19 24 24 Cl 1.73605 * 119.90283 * 179.97438 * 23 22 21 25 25 C 1.38565 * 120.19446 * 359.72265 * 23 22 21 26 26 C 1.38190 * 120.32267 * 0.56021 * 25 23 22 27 27 C 1.38326 * 120.13230 * 359.43865 * 26 25 23 28 28 F 1.35097 * 120.09405 * 180.30443 * 27 26 25 29 29 H 0.96997 * 119.99914 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00692 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46906 * 59.99595 * 10 9 7 32 32 H 1.09002 * 109.47028 * 299.99607 * 10 9 7 33 33 H 1.08996 * 110.75853 * 38.30438 * 13 11 10 34 34 H 1.09002 * 110.75355 * 274.93233 * 13 11 10 35 35 H 1.08998 * 110.48441 * 203.38188 * 14 13 11 36 36 H 1.08996 * 110.48809 * 80.73454 * 14 13 11 37 37 H 1.08999 * 110.03434 * 264.32687 * 15 14 13 38 38 H 1.08999 * 110.03159 * 142.89577 * 15 14 13 39 39 H 0.97005 * 119.99462 * 266.44672 * 18 16 15 40 40 H 1.07999 * 120.06354 * 359.97438 * 22 21 19 41 41 H 1.07991 * 119.83810 * 180.29294 * 25 23 22 42 42 H 1.08002 * 119.93558 * 179.72410 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3422 -4.7055 0.8099 13 6 0.3380 -4.9130 -1.3640 14 6 -0.1126 -6.3942 -1.4109 15 6 1.0593 -7.1667 -0.7707 16 6 1.8073 -6.1655 0.1271 17 1 2.8375 -6.0571 -0.2122 18 7 1.7832 -6.6240 1.5183 19 6 2.7267 -7.4774 1.9632 20 8 3.5981 -7.8664 1.2100 21 6 2.7028 -7.9391 3.3658 22 6 1.7036 -7.4938 4.2341 23 6 1.6867 -7.9294 5.5431 24 17 0.4456 -7.3761 6.6234 25 6 2.6545 -8.8113 5.9966 26 6 3.6502 -9.2524 5.1458 27 6 3.6799 -8.8243 3.8308 28 9 4.6501 -9.2608 2.9981 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7146 -0.8895 33 1 1.0236 -4.6917 -2.1820 34 1 -0.5237 -4.2461 -1.3896 35 1 -0.2628 -6.7147 -2.4418 36 1 -1.0243 -6.5342 -0.8302 37 1 1.7262 -7.5434 -1.5463 38 1 0.6783 -7.9935 -0.1713 39 1 1.0881 -6.3132 2.1194 40 1 0.9457 -6.8099 3.8815 41 1 2.6331 -9.1523 7.0210 42 1 4.4040 -9.9363 5.5071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667738731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -60.092972 kcal Electronic energy + Delta-G solvation = -26683.597770 eV Core-core repulsion = 22603.612355 eV Total energy + Delta-G solvation = -4079.985415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.18957 -40.49224 -39.14822 -37.86404 -36.79954 -34.53346 -33.78200 -31.88291 -31.40950 -30.71360 -28.61711 -27.64528 -24.87274 -24.25241 -23.14119 -22.12039 -21.27475 -20.15774 -19.83761 -18.47375 -17.53057 -17.23756 -16.91093 -16.25655 -16.03103 -15.95374 -15.14382 -14.98951 -14.63480 -14.36098 -14.32818 -13.80805 -13.68882 -13.64585 -13.43231 -13.19726 -12.98762 -12.84628 -12.14000 -12.05995 -11.85142 -11.62657 -11.48124 -11.36391 -10.96170 -10.84962 -10.77178 -10.49542 -10.40009 -10.34066 -10.06303 -9.98920 -9.78468 -9.70130 -9.12876 -8.99294 -8.86361 -6.91841 -5.76540 -3.04787 0.15073 0.47500 1.59793 2.41246 2.93684 3.23030 3.44743 3.49015 3.50095 3.67851 4.04806 4.15200 4.49601 4.54539 4.60325 4.73284 4.80770 4.94613 5.01686 5.11001 5.38749 5.41739 5.43935 5.51817 5.54557 5.61328 5.64535 5.75389 5.79907 5.89566 6.03981 6.08628 6.14603 6.19349 6.26834 6.50695 6.52192 6.54874 6.76662 6.88341 7.35902 7.70500 8.05072 8.42598 9.53950 10.11239 10.46514 11.46298 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010026 B = 0.002878 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.143031 B = 9726.858655 C =10857.288176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.147 3.853 17 H 0.095 0.905 18 N -0.710 5.710 19 C 0.557 3.443 20 O -0.521 6.521 21 C -0.157 4.157 22 C -0.048 4.048 23 C -0.057 4.057 24 Cl -0.053 7.053 25 C -0.057 4.057 26 C -0.152 4.152 27 C 0.164 3.836 28 F -0.108 7.108 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.022 0.978 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.399 0.601 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -22.282 11.099 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.042 3.958 17 H 0.113 0.887 18 N -0.362 5.362 19 C 0.343 3.657 20 O -0.398 6.398 21 C -0.162 4.162 22 C -0.067 4.067 23 C -0.084 4.084 24 Cl -0.024 7.024 25 C -0.076 4.076 26 C -0.171 4.171 27 C 0.144 3.856 28 F -0.086 7.086 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.235 0.765 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.421 -22.386 10.587 24.804 hybrid contribution -0.136 1.128 0.377 1.197 sum 1.285 -21.258 10.964 23.953 Atomic orbital electron populations 1.69644 1.05076 1.25731 1.57861 1.24718 0.95518 0.97627 1.03053 0.86275 0.78534 0.83553 0.77882 1.21268 1.21687 1.21291 1.19189 0.91019 0.84202 1.42628 0.91312 1.42305 1.05788 0.99828 1.89507 1.20687 0.92907 0.85176 0.97939 1.22436 0.97896 0.93074 0.98704 0.90220 1.22460 1.00531 0.95234 0.96592 1.22392 0.97548 0.95944 1.00386 1.22545 0.97588 0.97852 0.98990 1.21785 1.01427 0.93133 0.79435 0.88655 1.46096 1.29999 1.46669 1.13418 1.17834 0.82146 0.79606 0.86111 1.90853 1.35918 1.56354 1.56685 1.20096 0.97992 1.02309 0.95768 1.21156 0.97011 0.97463 0.91110 1.20801 0.94518 1.01149 0.91903 1.98412 1.51894 1.88532 1.63560 1.21100 0.91677 0.94178 1.00662 1.21134 1.01140 1.03319 0.91531 1.17755 0.86144 0.93651 0.88085 1.91630 1.59362 1.86865 1.70760 0.93501 0.78267 0.96478 0.96049 0.90972 0.90636 0.91745 0.91821 0.91175 0.91734 0.76508 0.83400 0.83363 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.16 5.49 -59.91 -0.33 -18.49 16 10 C 0.16 3.20 5.54 -4.04 -0.02 3.18 16 11 C -0.10 -1.55 2.58 -88.96 -0.23 -1.78 16 12 H 0.08 1.19 7.73 -51.93 -0.40 0.79 16 13 C -0.11 -1.60 6.19 -24.73 -0.15 -1.75 16 14 C -0.12 -1.45 6.83 -25.07 -0.17 -1.63 16 15 C -0.13 -1.58 6.59 -25.61 -0.17 -1.75 16 16 C 0.15 2.00 2.80 -66.81 -0.19 1.81 16 17 H 0.10 1.49 7.30 -51.93 -0.38 1.11 16 18 N -0.71 -8.68 4.94 -53.71 -0.27 -8.95 16 19 C 0.56 7.62 7.76 -12.40 -0.10 7.52 16 20 O -0.52 -8.98 15.02 5.30 0.08 -8.91 16 21 C -0.16 -1.74 5.88 -104.92 -0.62 -2.36 16 22 C -0.05 -0.42 9.31 -39.15 -0.36 -0.79 16 23 C -0.06 -0.45 6.31 -39.56 -0.25 -0.70 16 24 Cl -0.05 -0.42 28.95 -51.86 -1.50 -1.92 16 25 C -0.06 -0.37 9.82 -39.48 -0.39 -0.76 16 26 C -0.15 -1.11 10.01 -39.57 -0.40 -1.51 16 27 C 0.16 1.76 7.28 -38.96 -0.28 1.47 16 28 F -0.11 -1.42 15.55 2.25 0.04 -1.38 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.38 9.90 7.64 -40.82 -0.31 9.59 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.44 8.02 -51.93 -0.42 0.03 16 33 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 39 H 0.40 3.98 6.37 -40.82 -0.26 3.72 16 40 H 0.15 1.09 6.40 -52.49 -0.34 0.75 16 41 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -32.87 368.58 -9.73 -42.60 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.43 Total: 7.66 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.57 Total: -6.36 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.13 Total: -54.70 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.87 -9.73 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667738731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.492 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds