Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48506 * 109.46679 * 239.99651 * 3 2 1 5 5 H 1.48498 * 109.47027 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47078 * 120.00089 * 3 2 1 7 7 C 1.38815 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00018 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47300 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.54271 * 307.61506 * 11 10 9 13 13 C 1.54898 * 110.48285 * 70.22596 * 11 10 9 14 14 C 1.54893 * 102.74742 * 156.62294 * 13 11 10 15 15 C 1.54270 * 104.19409 * 322.05443 * 14 13 11 16 16 C 1.53876 * 106.59613 * 23.61365 * 15 14 13 17 17 H 1.09003 * 110.03242 * 240.66160 * 16 15 14 18 18 N 1.46502 * 110.03091 * 119.28759 * 16 15 14 19 19 C 1.34775 * 120.00570 * 86.44938 * 18 16 15 20 20 O 1.21570 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.47690 * 120.00415 * 179.97438 * 19 18 16 22 22 C 1.39661 * 120.15855 * 0.02562 * 21 19 18 23 23 C 1.37964 * 119.86239 * 179.97438 * 22 21 19 24 24 Cl 1.73605 * 119.90283 * 179.97438 * 23 22 21 25 25 C 1.38565 * 120.19446 * 359.72265 * 23 22 21 26 26 C 1.38190 * 120.32267 * 0.56021 * 25 23 22 27 27 C 1.38326 * 120.13230 * 359.43865 * 26 25 23 28 28 F 1.35097 * 120.09405 * 180.30443 * 27 26 25 29 29 H 0.96997 * 119.99914 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00692 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46906 * 59.99595 * 10 9 7 32 32 H 1.09002 * 109.47028 * 299.99607 * 10 9 7 33 33 H 1.08996 * 110.75853 * 38.30438 * 13 11 10 34 34 H 1.09002 * 110.75355 * 274.93233 * 13 11 10 35 35 H 1.08998 * 110.48441 * 203.38188 * 14 13 11 36 36 H 1.08996 * 110.48809 * 80.73454 * 14 13 11 37 37 H 1.08999 * 110.03434 * 264.32687 * 15 14 13 38 38 H 1.08999 * 110.03159 * 142.89577 * 15 14 13 39 39 H 0.97005 * 119.99462 * 266.44672 * 18 16 15 40 40 H 1.07999 * 120.06354 * 359.97438 * 22 21 19 41 41 H 1.07991 * 119.83810 * 180.29294 * 25 23 22 42 42 H 1.08002 * 119.93558 * 179.72410 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3422 -4.7055 0.8099 13 6 0.3380 -4.9130 -1.3640 14 6 -0.1126 -6.3942 -1.4109 15 6 1.0593 -7.1667 -0.7707 16 6 1.8073 -6.1655 0.1271 17 1 2.8375 -6.0571 -0.2122 18 7 1.7832 -6.6240 1.5183 19 6 2.7267 -7.4774 1.9632 20 8 3.5981 -7.8664 1.2100 21 6 2.7028 -7.9391 3.3658 22 6 1.7036 -7.4938 4.2341 23 6 1.6867 -7.9294 5.5431 24 17 0.4456 -7.3761 6.6234 25 6 2.6545 -8.8113 5.9966 26 6 3.6502 -9.2524 5.1458 27 6 3.6799 -8.8243 3.8308 28 9 4.6501 -9.2608 2.9981 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7146 -0.8895 33 1 1.0236 -4.6917 -2.1820 34 1 -0.5237 -4.2461 -1.3896 35 1 -0.2628 -6.7147 -2.4418 36 1 -1.0243 -6.5342 -0.8302 37 1 1.7262 -7.5434 -1.5463 38 1 0.6783 -7.9935 -0.1713 39 1 1.0881 -6.3132 2.1194 40 1 0.9457 -6.8099 3.8815 41 1 2.6331 -9.1523 7.0210 42 1 4.4040 -9.9363 5.5071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667738731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -79.905360 kcal Electronic energy + Delta-G solvation = -26684.456900 eV Core-core repulsion = 22603.612355 eV Total energy + Delta-G solvation = -4080.844545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.04973 -41.47934 -40.00982 -38.99135 -37.44737 -36.34254 -34.94174 -33.31769 -32.62083 -31.39709 -30.22819 -28.71469 -26.40729 -25.35135 -24.07456 -23.62742 -22.26067 -21.35830 -20.92797 -19.55071 -18.95101 -18.30714 -17.98237 -17.29623 -16.92864 -16.77606 -16.58609 -16.19625 -15.82367 -15.62190 -15.29438 -15.16153 -15.06412 -14.62230 -14.55736 -14.38731 -14.30264 -13.68657 -13.50382 -13.17139 -12.93556 -12.77984 -12.74116 -12.49865 -12.33622 -12.20930 -12.11412 -11.97727 -11.87114 -11.64941 -11.60541 -11.44182 -11.12601 -10.92783 -10.48650 -10.14235 -9.74976 -9.00543 -7.95930 -5.24287 -0.57847 -0.17802 0.96473 1.46738 1.49155 1.55443 1.57125 1.95435 2.40258 2.55111 2.97341 3.31297 3.37065 3.41866 3.52553 3.65246 3.85749 3.87469 3.95821 4.14301 4.28040 4.38961 4.45726 4.48803 4.53736 4.57892 4.63985 4.70753 4.72901 4.83641 4.92002 4.97206 4.99471 5.06827 5.16045 5.23088 5.32202 5.43029 5.45744 5.49344 5.54294 6.26339 6.36090 7.03335 7.33637 8.07774 8.33974 9.26934 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010026 B = 0.002878 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.143031 B = 9726.858655 C =10857.288176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.090 4.090 12 H 0.087 0.913 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.072 0.928 18 N -0.702 5.702 19 C 0.555 3.445 20 O -0.566 6.566 21 C -0.176 4.176 22 C -0.047 4.047 23 C -0.059 4.059 24 Cl -0.049 7.049 25 C -0.041 4.041 26 C -0.139 4.139 27 C 0.139 3.861 28 F -0.130 7.130 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.009 0.991 32 H 0.014 0.986 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.411 0.589 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 -23.373 12.797 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.109 4.109 12 H 0.105 0.895 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.090 0.910 18 N -0.354 5.354 19 C 0.343 3.657 20 O -0.446 6.446 21 C -0.180 4.180 22 C -0.066 4.066 23 C -0.086 4.086 24 Cl -0.020 7.020 25 C -0.060 4.060 26 C -0.157 4.157 27 C 0.119 3.881 28 F -0.108 7.108 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.027 0.973 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.249 0.751 40 H 0.176 0.824 41 H 0.200 0.800 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.019 -23.492 12.302 26.538 hybrid contribution 0.006 1.437 -0.071 1.438 sum 1.025 -22.055 12.231 25.240 Atomic orbital electron populations 1.69785 1.06372 1.26199 1.59145 1.25493 0.96408 1.00806 1.03463 0.85267 0.77314 0.79412 0.78098 1.20619 1.21786 1.20537 1.19547 0.91316 0.85589 1.41781 0.91339 1.42436 1.05622 1.00691 1.89333 1.20771 0.93651 0.85121 0.96961 1.22274 0.96996 0.91948 0.99724 0.89462 1.22413 0.99679 0.97304 0.95464 1.22323 0.97681 0.93208 1.01646 1.22478 0.97515 0.97561 0.98668 1.21574 1.00124 0.92841 0.80680 0.90999 1.45995 1.30114 1.46217 1.13072 1.18252 0.81389 0.79056 0.87040 1.90822 1.37583 1.58055 1.58098 1.19917 0.99623 1.03873 0.94597 1.21220 0.96565 0.97456 0.91381 1.20933 0.94892 1.01254 0.91560 1.98420 1.51825 1.88547 1.63219 1.21499 0.90106 0.92472 1.01888 1.21431 1.01634 1.02818 0.89839 1.18181 0.86086 0.94596 0.89277 1.91573 1.60258 1.87261 1.71698 0.93875 0.79005 0.97260 0.96778 0.92168 0.91814 0.90205 0.90264 0.91282 0.90710 0.75095 0.82393 0.80023 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.30 13.06 21.65 0.28 -58.02 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.25 -14.18 9.99 84.04 0.84 -13.34 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -37.34 5.49 -343.44 -1.89 -39.23 16 10 C 0.16 6.59 5.54 86.38 0.48 7.07 16 11 C -0.09 -2.75 2.58 -9.72 -0.03 -2.78 16 12 H 0.09 2.55 7.73 -2.39 -0.02 2.53 16 13 C -0.11 -3.17 6.19 31.89 0.20 -2.98 16 14 C -0.11 -2.39 6.83 31.67 0.22 -2.17 16 15 C -0.12 -2.86 6.59 31.32 0.21 -2.65 16 16 C 0.15 4.19 2.80 45.71 0.13 4.32 16 17 H 0.07 2.34 7.30 -2.39 -0.02 2.32 16 18 N -0.70 -17.08 4.94 -442.12 -2.19 -19.27 16 19 C 0.55 15.46 7.76 86.74 0.67 16.13 16 20 O -0.57 -20.29 15.02 -3.94 -0.06 -20.35 16 21 C -0.18 -3.84 5.88 -20.06 -0.12 -3.96 16 22 C -0.05 -0.76 9.31 22.55 0.21 -0.55 16 23 C -0.06 -0.80 6.31 22.28 0.14 -0.66 16 24 Cl -0.05 -0.66 28.95 -2.72 -0.08 -0.73 16 25 C -0.04 -0.40 9.82 22.34 0.22 -0.18 16 26 C -0.14 -1.68 10.01 22.28 0.22 -1.46 16 27 C 0.14 2.90 7.28 22.67 0.17 3.07 16 28 F -0.13 -3.48 15.55 44.97 0.70 -2.78 16 29 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 30 H 0.38 19.84 7.64 -92.71 -0.71 19.13 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.01 0.60 8.02 -2.39 -0.02 0.59 16 33 H 0.06 1.86 7.97 -2.39 -0.02 1.84 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 39 H 0.41 7.88 6.37 -92.70 -0.59 7.29 16 40 H 0.16 2.11 6.40 -2.91 -0.02 2.09 16 41 H 0.18 0.57 8.06 -2.92 -0.02 0.55 16 42 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -72.16 368.58 2.59 -69.57 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.23 Total: 26.12 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.02 Total: -3.64 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -3.79 Total: -116.51 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.06 Total: -20.35 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.70 Total: -2.78 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.73 kcal Total: -72.16 2.59 -69.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667738731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.336 kcal (2) G-P(sol) polarization free energy of solvation -72.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds