Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.43338 * 54.29803 * 11 10 9 13 13 C 1.54885 * 110.48653 * 291.75792 * 11 10 9 14 14 C 1.54889 * 102.74980 * 203.37789 * 13 11 10 15 15 C 1.54273 * 104.19421 * 37.93859 * 14 13 11 16 16 C 1.54083 * 106.62339 * 336.28168 * 15 14 13 17 17 H 1.08993 * 110.16120 * 240.87793 * 16 15 14 18 18 N 1.46502 * 110.00664 * 119.37872 * 16 15 14 19 19 C 1.34776 * 119.99826 * 87.97632 * 18 16 15 20 20 O 1.21583 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.47612 * 120.00052 * 179.97438 * 19 18 16 22 22 C 1.39892 * 120.17892 * 270.00311 * 21 19 18 23 23 F 1.35096 * 120.10102 * 359.97438 * 22 21 19 24 24 C 1.38245 * 119.79296 * 180.02562 * 22 21 19 25 25 C 1.38288 * 120.15564 * 359.97438 * 24 22 21 26 26 C 1.38349 * 120.36165 * 0.02562 * 25 24 22 27 27 C 1.38079 * 120.20281 * 359.72178 * 26 25 24 28 28 Cl 1.73600 * 120.07809 * 180.27730 * 27 26 25 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 32 32 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 33 33 H 1.09003 * 110.75649 * 321.68843 * 13 11 10 34 34 H 1.09000 * 110.75914 * 84.88039 * 13 11 10 35 35 H 1.08995 * 110.48930 * 156.61827 * 14 13 11 36 36 H 1.09009 * 110.48608 * 279.26622 * 14 13 11 37 37 H 1.09004 * 110.02693 * 95.67826 * 15 14 13 38 38 H 1.09003 * 110.03186 * 217.10350 * 15 14 13 39 39 H 0.97000 * 119.99898 * 267.97820 * 18 16 15 40 40 H 1.08001 * 119.91949 * 179.97438 * 24 22 21 41 41 H 1.08001 * 119.81623 * 180.02562 * 25 24 22 42 42 H 1.07994 * 119.89747 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3637 -4.7214 -0.8320 13 6 0.3022 -4.8825 1.3450 14 6 -0.1501 -6.3624 1.4133 15 6 1.0380 -7.1487 0.8216 16 6 1.8096 -6.1677 -0.0820 17 1 1.8169 -6.5302 -1.1099 18 7 3.1823 -6.0113 0.4053 19 6 4.1464 -6.8546 -0.0141 20 8 3.8770 -7.7448 -0.7971 21 6 5.5297 -6.6966 0.4765 22 6 6.4325 -5.8823 -0.2155 23 9 6.0416 -5.2373 -1.3363 24 6 7.7262 -5.7405 0.2507 25 6 8.1276 -6.4006 1.3977 26 6 7.2401 -7.2076 2.0870 27 6 5.9429 -7.3557 1.6375 28 17 4.8299 -8.3634 2.5090 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6853 -3.7142 -0.8912 32 1 2.6841 -3.7150 0.8887 33 1 0.9661 -4.6428 2.1756 34 1 -0.5579 -4.2130 1.3342 35 1 -0.3275 -6.6597 2.4468 36 1 -1.0463 -6.5156 0.8120 37 1 1.6841 -7.5078 1.6227 38 1 0.6727 -7.9889 0.2311 39 1 3.3973 -5.3008 1.0297 40 1 8.4250 -5.1126 -0.2821 41 1 9.1395 -6.2856 1.7572 42 1 7.5614 -7.7193 2.9820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667765537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -55.453896 kcal Electronic energy + Delta-G solvation = -27544.942365 eV Core-core repulsion = 23465.158116 eV Total energy + Delta-G solvation = -4079.784249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.25136 -40.46792 -39.18304 -37.81310 -36.87915 -34.70020 -33.59089 -31.67833 -31.47160 -30.92970 -28.41875 -27.71376 -24.58347 -24.06869 -23.23133 -22.56277 -21.18615 -20.39593 -19.32666 -18.58550 -17.73982 -17.20165 -17.13259 -16.40447 -15.85535 -15.64044 -15.21740 -15.10501 -14.84620 -14.46007 -14.21001 -13.87088 -13.75680 -13.65046 -13.57301 -13.34762 -13.07237 -12.60474 -12.38476 -12.05022 -11.78438 -11.60782 -11.44784 -11.21193 -10.96305 -10.79108 -10.60343 -10.58204 -10.43291 -10.33227 -10.08469 -9.98209 -9.43185 -9.18563 -9.17627 -9.04086 -8.88660 -7.01371 -6.10967 -3.10564 0.38758 0.55009 1.56473 2.38477 2.84063 3.08694 3.50828 3.54554 3.71994 3.75314 4.22868 4.39026 4.47327 4.58077 4.67090 4.71482 4.75088 4.91065 5.00379 5.32286 5.37920 5.45717 5.50061 5.50892 5.61016 5.63006 5.69302 5.69679 5.77938 5.84538 5.97362 6.01630 6.05007 6.17619 6.20823 6.41871 6.42915 6.54988 6.65959 6.72229 7.41737 7.79641 8.06676 8.75503 9.22339 10.08698 10.23739 11.37663 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.003840 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.645847 B = 7289.292729 C = 9005.211320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.740 5.740 10 C 0.170 3.830 11 C -0.109 4.109 12 H 0.088 0.912 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.092 0.908 18 N -0.702 5.702 19 C 0.566 3.434 20 O -0.523 6.523 21 C -0.154 4.154 22 C 0.149 3.851 23 F -0.118 7.118 24 C -0.150 4.150 25 C -0.063 4.063 26 C -0.124 4.124 27 C 0.019 3.981 28 Cl -0.042 7.042 29 H 0.255 0.745 30 H 0.367 0.633 31 H 0.021 0.979 32 H 0.014 0.986 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.406 0.594 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.700 -17.722 6.049 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.463 4.463 8 H 0.081 0.919 9 N -0.386 5.386 10 C 0.042 3.958 11 C -0.128 4.128 12 H 0.106 0.894 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.110 0.890 18 N -0.354 5.354 19 C 0.350 3.650 20 O -0.399 6.399 21 C -0.159 4.159 22 C 0.129 3.871 23 F -0.096 7.096 24 C -0.169 4.169 25 C -0.081 4.081 26 C -0.143 4.143 27 C -0.009 4.009 28 Cl -0.013 7.013 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.244 0.756 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.439 -16.752 5.510 22.172 hybrid contribution -0.051 -1.309 0.138 1.317 sum 13.388 -18.061 5.648 23.180 Atomic orbital electron populations 1.70886 1.06021 1.28385 1.53611 1.25756 0.97046 1.00932 1.00424 0.83257 0.74245 0.75667 0.75849 1.20996 1.22295 1.22267 1.20010 0.91965 0.85832 1.48443 0.91900 1.42329 1.04873 1.00778 1.90591 1.20501 0.92902 0.84882 0.97493 1.22504 0.97936 0.93337 0.99021 0.89407 1.22502 1.00220 0.95473 0.96826 1.22377 0.97631 0.95639 1.00533 1.22607 0.97207 0.97993 0.99147 1.21719 0.79637 0.95643 0.98629 0.89036 1.46241 1.08725 1.32964 1.47459 1.17763 0.83904 0.82281 0.81094 1.90812 1.82211 1.32871 1.34009 1.19880 0.96264 1.02390 0.97401 1.17506 0.92682 0.92640 0.84270 1.91618 1.91293 1.78654 1.48029 1.21275 0.94446 1.02603 0.98569 1.21123 1.00070 0.93774 0.93157 1.21091 0.90991 1.00564 1.01634 1.20672 0.92070 0.95535 0.92592 1.98419 1.61616 1.66546 1.74670 0.93417 0.79921 0.96078 0.96799 0.91402 0.91011 0.91795 0.91570 0.91347 0.91307 0.75597 0.83233 0.83421 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.13 13.70 55.49 0.76 -28.37 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 3 Si 1.08 25.95 29.92 -169.99 -5.09 20.86 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.33 -9.38 9.99 -15.06 -0.15 -9.53 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -18.51 5.46 -59.91 -0.33 -18.84 16 10 C 0.17 3.40 4.80 -4.05 -0.02 3.38 16 11 C -0.11 -1.74 2.86 -88.96 -0.25 -1.99 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 13 C -0.11 -1.66 6.10 -24.74 -0.15 -1.81 16 14 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 15 C -0.13 -1.66 6.60 -25.50 -0.17 -1.82 16 16 C 0.15 2.15 3.13 -66.70 -0.21 1.94 16 17 H 0.09 1.43 7.56 -51.93 -0.39 1.04 16 18 N -0.70 -10.13 4.34 -53.63 -0.23 -10.36 16 19 C 0.57 8.66 5.95 -12.44 -0.07 8.58 16 20 O -0.52 -9.52 16.76 5.29 0.09 -9.43 16 21 C -0.15 -2.01 5.64 -104.89 -0.59 -2.60 16 22 C 0.15 1.83 7.29 -38.96 -0.28 1.55 16 23 F -0.12 -1.72 16.83 2.25 0.04 -1.68 16 24 C -0.15 -1.29 10.01 -39.56 -0.40 -1.68 16 25 C -0.06 -0.41 10.03 -39.52 -0.40 -0.81 16 26 C -0.12 -0.95 9.81 -39.60 -0.39 -1.34 16 27 C 0.02 0.20 6.35 -39.07 -0.25 -0.05 16 28 Cl -0.04 -0.45 28.04 -51.86 -1.45 -1.90 16 29 H 0.25 7.72 6.77 -40.82 -0.28 7.44 16 30 H 0.37 9.35 6.41 -40.82 -0.26 9.09 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.01 0.28 6.34 -51.93 -0.33 -0.05 16 33 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 37 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.41 5.69 6.50 -40.82 -0.27 5.43 16 40 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -34.02 367.63 -9.64 -43.65 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.36 Total: 9.76 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.60 Total: -9.22 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.20 Total: -57.57 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.09 Total: 20.86 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.45 Total: -1.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.02 -9.64 -43.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667765537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.802 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds