Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.43338 * 54.29803 * 11 10 9 13 13 C 1.54885 * 110.48653 * 291.75792 * 11 10 9 14 14 C 1.54889 * 102.74980 * 203.37789 * 13 11 10 15 15 C 1.54273 * 104.19421 * 37.93859 * 14 13 11 16 16 C 1.54083 * 106.62339 * 336.28168 * 15 14 13 17 17 H 1.08993 * 110.16120 * 240.87793 * 16 15 14 18 18 N 1.46502 * 110.00664 * 119.37872 * 16 15 14 19 19 C 1.34776 * 119.99826 * 87.97632 * 18 16 15 20 20 O 1.21583 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.47612 * 120.00052 * 179.97438 * 19 18 16 22 22 C 1.39892 * 120.17892 * 270.00311 * 21 19 18 23 23 F 1.35096 * 120.10102 * 359.97438 * 22 21 19 24 24 C 1.38245 * 119.79296 * 180.02562 * 22 21 19 25 25 C 1.38288 * 120.15564 * 359.97438 * 24 22 21 26 26 C 1.38349 * 120.36165 * 0.02562 * 25 24 22 27 27 C 1.38079 * 120.20281 * 359.72178 * 26 25 24 28 28 Cl 1.73600 * 120.07809 * 180.27730 * 27 26 25 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 32 32 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 33 33 H 1.09003 * 110.75649 * 321.68843 * 13 11 10 34 34 H 1.09000 * 110.75914 * 84.88039 * 13 11 10 35 35 H 1.08995 * 110.48930 * 156.61827 * 14 13 11 36 36 H 1.09009 * 110.48608 * 279.26622 * 14 13 11 37 37 H 1.09004 * 110.02693 * 95.67826 * 15 14 13 38 38 H 1.09003 * 110.03186 * 217.10350 * 15 14 13 39 39 H 0.97000 * 119.99898 * 267.97820 * 18 16 15 40 40 H 1.08001 * 119.91949 * 179.97438 * 24 22 21 41 41 H 1.08001 * 119.81623 * 180.02562 * 25 24 22 42 42 H 1.07994 * 119.89747 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3637 -4.7214 -0.8320 13 6 0.3022 -4.8825 1.3450 14 6 -0.1501 -6.3624 1.4133 15 6 1.0380 -7.1487 0.8216 16 6 1.8096 -6.1677 -0.0820 17 1 1.8169 -6.5302 -1.1099 18 7 3.1823 -6.0113 0.4053 19 6 4.1464 -6.8546 -0.0141 20 8 3.8770 -7.7448 -0.7971 21 6 5.5297 -6.6966 0.4765 22 6 6.4325 -5.8823 -0.2155 23 9 6.0416 -5.2373 -1.3363 24 6 7.7262 -5.7405 0.2507 25 6 8.1276 -6.4006 1.3977 26 6 7.2401 -7.2076 2.0870 27 6 5.9429 -7.3557 1.6375 28 17 4.8299 -8.3634 2.5090 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6853 -3.7142 -0.8912 32 1 2.6841 -3.7150 0.8887 33 1 0.9661 -4.6428 2.1756 34 1 -0.5579 -4.2130 1.3342 35 1 -0.3275 -6.6597 2.4468 36 1 -1.0463 -6.5156 0.8120 37 1 1.6841 -7.5078 1.6227 38 1 0.6727 -7.9889 0.2311 39 1 3.3973 -5.3008 1.0297 40 1 8.4250 -5.1126 -0.2821 41 1 9.1395 -6.2856 1.7572 42 1 7.5614 -7.7193 2.9820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667765537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -76.396219 kcal Electronic energy + Delta-G solvation = -27545.850493 eV Core-core repulsion = 23465.158116 eV Total energy + Delta-G solvation = -4080.692377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.22961 -41.58936 -40.11552 -39.00979 -37.65876 -36.63866 -34.79144 -33.37026 -32.49106 -31.64555 -30.07484 -28.84991 -26.18020 -25.24010 -24.38580 -23.98321 -22.23707 -21.53787 -20.68113 -19.74130 -19.21955 -18.52677 -17.99437 -17.64485 -16.91932 -16.79975 -16.33385 -16.20272 -16.00481 -15.76412 -15.58895 -15.43782 -15.15434 -14.91756 -14.68311 -14.58052 -14.37521 -13.72805 -13.28120 -12.93516 -12.87670 -12.76712 -12.63112 -12.53466 -12.31890 -12.24544 -12.08824 -11.97865 -11.87225 -11.78600 -11.57506 -11.25636 -11.24083 -10.93958 -10.27860 -10.20952 -9.92523 -9.14336 -8.41716 -5.35843 -0.36641 -0.17458 0.78645 1.22785 1.57338 1.67269 1.83935 1.91024 2.24408 2.69294 2.95369 3.22352 3.38058 3.42378 3.53884 3.68938 3.72572 3.76393 3.97623 4.06528 4.22032 4.26201 4.33686 4.41115 4.42274 4.52049 4.58763 4.66289 4.71431 4.80196 4.89518 4.95101 4.99394 5.07106 5.08651 5.14293 5.22007 5.34519 5.40892 5.52312 5.55369 6.22477 6.48284 6.88685 7.06954 7.97076 8.08294 9.10397 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.003840 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.645847 B = 7289.292729 C = 9005.211320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.100 4.100 3 Si 1.126 2.874 4 H -0.291 1.291 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.337 4.337 8 H 0.063 0.937 9 N -0.751 5.751 10 C 0.175 3.825 11 C -0.101 4.101 12 H 0.082 0.918 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.122 4.122 16 C 0.152 3.848 17 H 0.077 0.923 18 N -0.699 5.699 19 C 0.567 3.433 20 O -0.561 6.561 21 C -0.182 4.182 22 C 0.116 3.884 23 F -0.143 7.143 24 C -0.143 4.143 25 C -0.042 4.042 26 C -0.112 4.112 27 C 0.007 3.993 28 Cl -0.049 7.049 29 H 0.245 0.755 30 H 0.363 0.637 31 H 0.004 0.996 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.408 0.592 40 H 0.173 0.827 41 H 0.196 0.804 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.157 -18.297 7.815 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.291 4.291 3 Si 0.951 3.049 4 H -0.217 1.217 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.469 4.469 8 H 0.081 0.919 9 N -0.396 5.396 10 C 0.048 3.952 11 C -0.120 4.120 12 H 0.100 0.900 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.096 0.904 18 N -0.350 5.350 19 C 0.352 3.648 20 O -0.440 6.440 21 C -0.187 4.187 22 C 0.095 3.905 23 F -0.122 7.122 24 C -0.161 4.161 25 C -0.060 4.060 26 C -0.130 4.130 27 C -0.021 4.021 28 Cl -0.020 7.020 29 H 0.055 0.945 30 H 0.195 0.805 31 H 0.021 0.979 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.191 0.809 41 H 0.213 0.787 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 15.918 -17.364 7.291 24.659 hybrid contribution -0.710 -1.183 -0.399 1.436 sum 15.208 -18.546 6.892 24.955 Atomic orbital electron populations 1.70993 1.07106 1.27930 1.55991 1.27192 0.97102 1.04526 1.00280 0.82655 0.73454 0.71657 0.77158 1.21709 1.20079 1.20667 1.20349 0.92238 0.87144 1.47132 0.91918 1.42499 1.04853 1.01680 1.90547 1.20553 0.93415 0.84485 0.96754 1.22378 0.97193 0.92504 0.99906 0.90008 1.22440 0.99404 0.97344 0.95483 1.22319 0.97563 0.93096 1.01907 1.22538 0.97112 0.97640 0.98798 1.21657 0.80006 0.95023 0.98636 0.90435 1.46232 1.08721 1.32868 1.47203 1.18164 0.84961 0.81432 0.80232 1.90772 1.83105 1.34424 1.35700 1.19802 0.95001 1.04668 0.99186 1.17954 0.94339 0.93841 0.84322 1.91547 1.91757 1.79371 1.49485 1.21661 0.92969 1.02426 0.99088 1.21695 1.01675 0.91293 0.91332 1.21569 0.89466 0.99782 1.02211 1.20879 0.93275 0.95724 0.92224 1.98412 1.62268 1.66737 1.74581 0.94497 0.80473 0.97850 0.95918 0.91862 0.92217 0.89910 0.90454 0.91119 0.90452 0.75437 0.80920 0.78708 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.00 13.70 21.65 0.30 -60.71 16 2 C -0.10 -5.81 5.50 84.86 0.47 -5.35 16 3 Si 1.13 52.06 29.92 68.60 2.05 54.11 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.34 -19.29 9.99 84.03 0.84 -18.45 16 8 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 9 N -0.75 -38.49 5.46 -343.47 -1.88 -40.36 16 10 C 0.17 7.19 4.80 86.38 0.41 7.60 16 11 C -0.10 -3.30 2.86 -9.72 -0.03 -3.33 16 12 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 13 C -0.11 -3.20 6.10 31.88 0.19 -3.00 16 14 C -0.11 -2.53 6.83 31.67 0.22 -2.31 16 15 C -0.12 -3.00 6.60 31.39 0.21 -2.79 16 16 C 0.15 4.50 3.13 45.79 0.14 4.64 16 17 H 0.08 2.53 7.56 -2.39 -0.02 2.51 16 18 N -0.70 -20.78 4.34 -441.85 -1.92 -22.70 16 19 C 0.57 17.94 5.95 86.72 0.52 18.45 16 20 O -0.56 -21.31 16.76 -3.98 -0.07 -21.38 16 21 C -0.18 -4.74 5.64 -20.04 -0.11 -4.86 16 22 C 0.12 2.83 7.29 22.67 0.17 2.99 16 23 F -0.14 -4.38 16.83 44.97 0.76 -3.63 16 24 C -0.14 -2.10 10.01 22.28 0.22 -1.87 16 25 C -0.04 -0.37 10.03 22.31 0.22 -0.14 16 26 C -0.11 -1.32 9.81 22.26 0.22 -1.10 16 27 C 0.01 0.13 6.35 22.60 0.14 0.28 16 28 Cl -0.05 -1.01 28.04 -2.72 -0.08 -1.09 16 29 H 0.24 15.26 6.77 -92.71 -0.63 14.63 16 30 H 0.36 19.08 6.41 -92.71 -0.59 18.49 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.02 0.92 6.34 -2.39 -0.02 0.90 16 33 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 1.72 7.92 -2.39 -0.02 1.70 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.41 11.74 6.50 -92.71 -0.60 11.14 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.20 -0.06 8.06 -2.91 -0.02 -0.09 16 42 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -76.41 367.63 3.01 -73.40 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.01 Total: 31.60 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 3.83 Total: -9.24 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -3.50 Total: -123.77 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.07 Total: -21.38 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.76 Total: -3.63 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.11 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -76.41 3.01 -73.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667765537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.001 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds