Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.43572 * 305.70452 * 11 10 9 13 13 C 1.54893 * 110.48149 * 68.24452 * 11 10 9 14 14 C 1.55032 * 102.68285 * 156.51618 * 13 11 10 15 15 C 1.54259 * 104.28073 * 322.23386 * 14 13 11 16 16 C 1.53881 * 106.60226 * 23.51626 * 15 14 13 17 17 H 1.08998 * 110.03497 * 119.28454 * 16 15 14 18 18 N 1.46497 * 110.03329 * 240.71679 * 16 15 14 19 19 C 1.34778 * 120.00095 * 272.16479 * 18 16 15 20 20 O 1.21572 * 119.99584 * 359.97438 * 19 18 16 21 21 C 1.47619 * 119.99751 * 179.97438 * 19 18 16 22 22 C 1.39886 * 120.17968 * 269.99498 * 21 19 18 23 23 F 1.35110 * 120.09908 * 0.02562 * 22 21 19 24 24 C 1.38236 * 119.79504 * 179.97438 * 22 21 19 25 25 C 1.38286 * 120.15715 * 0.02562 * 24 22 21 26 26 C 1.38346 * 120.36027 * 359.97438 * 25 24 22 27 27 C 1.38081 * 120.20292 * 359.70048 * 26 25 24 28 28 Cl 1.73598 * 120.08249 * 180.30403 * 27 26 25 29 29 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 32 32 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 33 33 H 1.09004 * 110.75410 * 274.93271 * 13 11 10 34 34 H 1.08997 * 110.76095 * 38.30574 * 13 11 10 35 35 H 1.08997 * 110.52582 * 203.48238 * 14 13 11 36 36 H 1.09007 * 110.36279 * 80.89877 * 14 13 11 37 37 H 1.09001 * 110.03567 * 264.23098 * 15 14 13 38 38 H 1.09001 * 110.07365 * 142.82303 * 15 14 13 39 39 H 0.97000 * 119.99726 * 92.16339 * 18 16 15 40 40 H 1.08005 * 119.92211 * 180.02562 * 24 22 21 41 41 H 1.07993 * 119.81869 * 179.97438 * 25 24 22 42 42 H 1.07995 * 119.90179 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8816 -1.5360 -0.8283 13 6 6.0509 -1.5637 1.3487 14 6 7.5592 -1.9156 1.4175 15 6 7.6460 -3.3360 0.8220 16 6 6.4107 -3.5115 -0.0786 17 1 6.7214 -3.6988 -1.1064 18 7 5.5886 -4.6221 0.4080 19 6 5.8369 -5.8787 -0.0115 20 8 6.7429 -6.0903 -0.7940 21 6 5.0089 -6.9978 0.4794 22 6 5.3768 -7.6893 1.6384 23 9 6.4920 -7.3347 2.3137 24 6 4.5952 -8.7357 2.0912 25 6 3.4533 -9.0992 1.4011 26 6 3.0834 -8.4198 0.2541 27 6 3.8495 -7.3679 -0.2077 28 17 3.3782 -6.5126 -1.6429 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0007 31 1 3.8484 -3.0428 0.8907 32 1 3.8490 -3.0424 -0.8892 33 1 5.9042 -0.4837 1.3369 34 1 5.5109 -2.0189 2.1790 35 1 7.9055 -1.9133 2.4510 36 1 8.1400 -1.2145 0.8180 37 1 7.6339 -4.0773 1.6210 38 1 8.5563 -3.4390 0.2313 39 1 4.8655 -4.4532 1.0322 40 1 4.8771 -9.2707 2.9861 41 1 2.8469 -9.9178 1.7595 42 1 2.1904 -8.7102 -0.2792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667765540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -72.563775 kcal Electronic energy + Delta-G solvation = -27562.718329 eV Core-core repulsion = 23482.192140 eV Total energy + Delta-G solvation = -4080.526189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.18380 -41.54554 -40.07971 -38.96754 -37.63510 -36.42520 -34.73353 -33.58818 -32.45910 -31.61940 -30.62098 -28.79435 -26.39700 -25.19189 -23.95848 -23.85554 -22.19126 -21.46177 -20.79253 -19.75345 -19.34452 -18.52638 -17.95769 -17.45932 -16.84196 -16.66495 -16.41454 -16.19163 -15.97935 -15.85286 -15.50227 -15.31883 -14.98812 -14.75691 -14.64393 -14.49067 -14.34684 -13.74819 -13.57179 -13.24032 -12.92484 -12.81231 -12.69830 -12.50612 -12.33911 -12.23928 -12.11376 -12.04091 -11.85774 -11.75252 -11.61558 -11.50037 -11.21708 -10.96450 -10.22537 -10.18598 -9.90109 -9.30947 -8.02428 -5.36246 -0.33995 -0.15053 0.84323 1.26969 1.37934 1.41392 1.48600 1.95543 2.26920 2.48575 2.95351 3.23694 3.29211 3.44979 3.59731 3.71240 3.75300 3.79064 3.96751 4.08582 4.23633 4.31957 4.41572 4.47468 4.48874 4.57260 4.61414 4.73183 4.78190 4.82959 4.97086 4.98560 5.06222 5.09533 5.15598 5.20269 5.28120 5.42057 5.46739 5.55004 5.75344 6.20735 6.27315 6.93432 7.07712 7.82541 8.03120 9.19020 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.003913 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.867907 B = 7153.409299 C = 8600.231429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.252 1.252 6 H -0.298 1.298 7 C -0.234 4.234 8 H 0.055 0.945 9 N -0.753 5.753 10 C 0.170 3.830 11 C -0.104 4.104 12 H 0.091 0.909 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.125 4.125 16 C 0.150 3.850 17 H 0.080 0.920 18 N -0.700 5.700 19 C 0.567 3.433 20 O -0.561 6.561 21 C -0.181 4.181 22 C 0.125 3.875 23 F -0.135 7.135 24 C -0.139 4.139 25 C -0.043 4.043 26 C -0.118 4.118 27 C 0.001 3.999 28 Cl -0.059 7.059 29 H 0.258 0.742 30 H 0.367 0.633 31 H 0.028 0.972 32 H 0.013 0.987 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.409 0.591 40 H 0.181 0.819 41 H 0.194 0.806 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.265 -18.493 6.098 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.176 1.176 6 H -0.224 1.224 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.399 5.399 10 C 0.044 3.956 11 C -0.123 4.123 12 H 0.109 0.891 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.164 4.164 16 C 0.046 3.954 17 H 0.098 0.902 18 N -0.351 5.351 19 C 0.353 3.647 20 O -0.440 6.440 21 C -0.186 4.186 22 C 0.105 3.895 23 F -0.113 7.113 24 C -0.157 4.157 25 C -0.061 4.061 26 C -0.136 4.136 27 C -0.027 4.027 28 Cl -0.030 7.030 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.045 0.955 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.246 0.754 40 H 0.198 0.802 41 H 0.211 0.789 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.727 -18.625 5.431 23.766 hybrid contribution -0.226 1.484 -0.182 1.512 sum 13.501 -17.141 5.249 22.442 Atomic orbital electron populations 1.69889 1.07155 1.26663 1.59649 1.25482 0.96073 1.01186 1.02524 0.85437 0.78671 0.79598 0.78279 1.20036 1.17638 1.22450 1.18997 0.82631 0.93420 1.41396 0.92709 1.42646 1.02454 1.03947 1.90818 1.20625 0.89955 0.87452 0.97577 1.22438 0.93609 0.95947 1.00281 0.89052 1.22566 0.96382 1.00743 0.95624 1.22343 0.95430 0.95359 1.01807 1.22517 0.96846 0.98227 0.98772 1.21647 0.90674 0.84386 0.98729 0.90219 1.46247 1.35778 1.05853 1.47215 1.18123 0.82981 0.83319 0.80317 1.90768 1.32699 1.84777 1.35727 1.19807 0.98494 1.01368 0.98957 1.17748 0.85131 0.96633 0.89997 1.91536 1.49883 1.91384 1.78544 1.21655 0.95276 0.95747 1.03038 1.21674 0.94479 0.98477 0.91468 1.21544 1.00583 0.93425 0.98086 1.20971 0.94485 0.96694 0.90549 1.98448 1.91162 1.76443 1.36911 0.93358 0.79926 0.95463 0.96857 0.91264 0.91549 0.90098 0.90258 0.91600 0.90552 0.75361 0.80180 0.78855 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.84 13.97 21.65 0.30 -62.54 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.95 44.98 27.74 68.60 1.90 46.88 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.23 -13.27 10.47 84.03 0.88 -12.39 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.75 -34.67 5.27 -343.45 -1.81 -36.47 16 10 C 0.17 6.38 4.79 86.38 0.41 6.80 16 11 C -0.10 -3.00 2.86 -9.72 -0.03 -3.02 16 12 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 13 C -0.12 -2.92 6.11 31.94 0.20 -2.73 16 14 C -0.11 -2.23 6.83 31.72 0.22 -2.01 16 15 C -0.13 -2.85 6.59 31.32 0.21 -2.64 16 16 C 0.15 4.11 3.12 45.72 0.14 4.25 16 17 H 0.08 2.40 7.56 -2.39 -0.02 2.38 16 18 N -0.70 -19.80 4.34 -442.18 -1.92 -21.72 16 19 C 0.57 17.50 5.95 86.72 0.52 18.02 16 20 O -0.56 -20.80 16.76 -3.94 -0.07 -20.87 16 21 C -0.18 -4.71 5.64 -20.03 -0.11 -4.82 16 22 C 0.13 2.66 7.29 22.67 0.17 2.83 16 23 F -0.14 -3.21 16.83 44.97 0.76 -2.46 16 24 C -0.14 -1.74 10.01 22.28 0.22 -1.52 16 25 C -0.04 -0.41 10.03 22.31 0.22 -0.19 16 26 C -0.12 -1.78 9.81 22.26 0.22 -1.56 16 27 C 0.00 0.01 6.35 22.60 0.14 0.16 16 28 Cl -0.06 -1.66 28.04 -2.72 -0.08 -1.73 16 29 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 30 H 0.37 16.01 5.44 -92.71 -0.50 15.50 16 31 H 0.03 1.01 6.34 -2.39 -0.02 1.00 16 32 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.07 1.74 8.00 -2.39 -0.02 1.72 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 11.18 6.50 -92.71 -0.60 10.58 16 40 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 41 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -75.90 366.20 2.87 -73.04 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.10 Total: 27.82 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 3.87 Total: -1.96 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -3.43 Total: -120.73 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.76 Total: -2.46 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.73 kcal Total: -75.90 2.87 -73.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667765540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.475 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds