Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48507 * 109.47250 * 270.00091 * 3 2 1 5 5 H 1.48498 * 109.47477 * 30.00396 * 3 2 1 6 6 H 1.48500 * 109.47247 * 150.00517 * 3 2 1 7 7 C 1.38811 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99984 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00253 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00068 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47096 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.43824 * 52.45612 * 11 10 9 13 13 C 1.54268 * 110.48772 * 289.77633 * 11 10 9 14 14 C 1.53873 * 106.60209 * 217.71220 * 13 11 10 15 15 C 1.54268 * 106.59522 * 0.02562 * 14 13 11 16 16 C 1.54883 * 104.19999 * 23.60832 * 15 14 13 17 17 H 1.09000 * 110.91719 * 80.44475 * 16 15 14 18 18 N 1.46498 * 110.76102 * 203.74599 * 16 15 14 19 19 C 1.34773 * 120.00119 * 268.33014 * 18 16 15 20 20 O 1.21579 * 120.00033 * 359.97438 * 19 18 16 21 21 C 1.47649 * 120.00084 * 179.97438 * 19 18 16 22 22 C 1.39695 * 120.12960 * 359.97438 * 21 19 18 23 23 C 1.37785 * 119.89118 * 179.97438 * 22 21 19 24 24 C 1.38713 * 120.15513 * 0.02562 * 23 22 21 25 25 F 1.35107 * 119.86922 * 179.97438 * 24 23 22 26 26 C 1.38562 * 120.26667 * 0.02562 * 24 23 22 27 27 C 1.38033 * 120.10270 * 359.97438 * 26 24 23 28 28 Cl 1.73602 * 120.08005 * 179.97438 * 27 26 24 29 29 H 0.96997 * 120.00536 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00370 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46887 * 60.00907 * 10 9 7 32 32 H 1.08999 * 109.47359 * 300.00320 * 10 9 7 33 33 H 1.09006 * 110.02905 * 336.99884 * 13 11 10 34 34 H 1.08999 * 110.03239 * 98.37782 * 13 11 10 35 35 H 1.09008 * 110.03008 * 119.27852 * 14 13 11 36 36 H 1.08995 * 110.03479 * 240.66724 * 14 13 11 37 37 H 1.09004 * 110.48192 * 264.93220 * 15 14 13 38 38 H 1.08997 * 110.48532 * 142.29136 * 15 14 13 39 39 H 0.96999 * 119.99871 * 88.32060 * 18 16 15 40 40 H 1.07996 * 120.05369 * 0.25957 * 22 21 19 41 41 H 1.07999 * 119.92088 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.95109 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.3431 -4.7040 -0.8115 13 6 0.3419 -4.9133 1.3580 14 6 0.1761 -6.4119 1.6656 15 6 0.8038 -7.1766 0.4820 16 6 1.8109 -6.1710 -0.1290 17 1 2.7393 -6.1545 0.4419 18 7 2.0737 -6.4884 -1.5348 19 6 3.1000 -7.2983 -1.8623 20 8 3.8080 -7.7650 -0.9910 21 6 3.3646 -7.6187 -3.2791 22 6 2.5525 -7.0844 -4.2823 23 6 2.8041 -7.3863 -5.6029 24 6 3.8612 -8.2195 -5.9380 25 9 4.1025 -8.5121 -7.2348 26 6 4.6702 -8.7539 -4.9481 27 6 4.4279 -8.4587 -3.6217 28 17 5.4415 -9.1291 -2.3819 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6853 -3.7149 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 0.9425 -4.4372 2.1331 34 1 -0.6351 -4.4339 1.2959 35 1 0.6965 -6.6630 2.5900 36 1 -0.8815 -6.6603 1.7534 37 1 0.0397 -7.4427 -0.2485 38 1 1.3218 -8.0681 0.8355 39 1 1.5090 -6.1159 -2.2299 40 1 1.7316 -6.4321 -4.0235 41 1 2.1763 -6.9738 -6.3789 42 1 5.4921 -9.4017 -5.2148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667769105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -54.222604 kcal Electronic energy + Delta-G solvation = -26583.496557 eV Core-core repulsion = 22503.765701 eV Total energy + Delta-G solvation = -4079.730857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.45168 -40.53158 -38.99451 -37.70275 -36.67398 -34.49945 -33.78184 -31.54420 -31.41679 -31.11273 -28.59115 -27.55716 -24.67078 -24.03016 -23.43865 -22.14489 -21.07084 -20.48677 -19.58902 -18.52630 -17.75193 -17.26185 -16.90531 -16.23592 -16.16299 -15.49379 -15.08570 -14.94132 -14.79284 -14.52951 -14.33454 -13.90669 -13.64266 -13.48366 -13.27791 -13.16354 -13.08118 -12.89891 -12.18840 -11.99167 -11.84786 -11.67981 -11.37676 -11.25594 -10.96827 -10.91657 -10.75726 -10.53024 -10.42240 -10.16826 -9.98205 -9.72682 -9.67240 -9.52874 -9.22874 -8.92254 -8.87935 -6.92694 -5.77709 -3.05925 0.16036 0.54327 1.74930 2.44278 2.99817 3.30777 3.42898 3.48577 3.50056 3.66003 4.10152 4.35530 4.37347 4.55079 4.63114 4.74278 4.81723 4.89931 5.02810 5.22189 5.36373 5.43886 5.52061 5.53383 5.54456 5.61486 5.64016 5.71254 5.80338 5.91108 6.06515 6.11432 6.17641 6.23604 6.29940 6.45509 6.54300 6.59391 6.77131 6.89207 7.42450 7.69912 8.12095 8.41453 9.52883 10.10463 10.45558 11.45158 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.002845 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.072902 B = 9839.525133 C =11185.579099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.078 0.922 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.132 4.132 16 C 0.147 3.853 17 H 0.101 0.899 18 N -0.711 5.711 19 C 0.554 3.446 20 O -0.515 6.515 21 C -0.137 4.137 22 C -0.043 4.043 23 C -0.157 4.157 24 C 0.136 3.864 25 F -0.128 7.128 26 C -0.159 4.159 27 C 0.040 3.960 28 Cl -0.015 7.015 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -21.194 -9.397 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.097 0.903 13 C -0.150 4.150 14 C -0.160 4.160 15 C -0.170 4.170 16 C 0.042 3.958 17 H 0.119 0.881 18 N -0.362 5.362 19 C 0.340 3.660 20 O -0.391 6.391 21 C -0.141 4.141 22 C -0.062 4.062 23 C -0.175 4.175 24 C 0.116 3.884 25 F -0.107 7.107 26 C -0.179 4.179 27 C 0.012 3.988 28 Cl 0.014 6.986 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.234 0.766 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.212 -21.469 -8.662 23.531 hybrid contribution -0.030 1.116 -0.654 1.294 sum 4.182 -20.353 -9.317 22.772 Atomic orbital electron populations 1.69651 1.05075 1.25610 1.57952 1.24717 0.95515 0.97632 1.03099 0.86206 0.78709 0.83883 0.77512 1.21755 1.21778 1.20762 1.19231 0.91032 0.84207 1.42463 0.91283 1.42328 1.05800 0.99880 1.89484 1.20695 0.92912 0.85179 0.97908 1.22428 0.97778 0.93442 0.98505 0.90346 1.22073 1.01169 0.95075 0.96686 1.22100 1.00446 0.95628 0.97858 1.22700 0.98176 0.98279 0.97880 1.22098 0.99161 0.94000 0.80525 0.88113 1.45895 1.31716 1.49185 1.09391 1.17902 0.81027 0.79509 0.87537 1.90877 1.47105 1.51411 1.49682 1.19939 0.97703 1.01533 0.94949 1.21216 0.97622 0.96270 0.91110 1.21207 0.98390 1.00056 0.97885 1.17689 0.95597 0.96849 0.78284 1.91557 1.93746 1.91644 1.33730 1.20975 1.02450 1.04137 0.90336 1.20713 0.92744 0.95311 0.90074 1.98445 1.65599 1.82759 1.51770 0.93558 0.78282 0.96151 0.96478 0.90960 0.91261 0.91869 0.91908 0.91546 0.91463 0.76577 0.83399 0.83260 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -17.96 5.49 -59.91 -0.33 -18.28 16 10 C 0.16 3.14 5.59 -4.04 -0.02 3.11 16 11 C -0.10 -1.52 2.51 -88.94 -0.22 -1.74 16 12 H 0.08 1.14 8.02 -51.93 -0.42 0.73 16 13 C -0.11 -1.61 6.23 -25.61 -0.16 -1.77 16 14 C -0.12 -1.42 6.80 -25.61 -0.17 -1.60 16 15 C -0.13 -1.51 6.51 -25.07 -0.16 -1.67 16 16 C 0.15 1.92 2.69 -65.93 -0.18 1.74 16 17 H 0.10 1.51 7.46 -51.93 -0.39 1.12 16 18 N -0.71 -8.22 5.13 -52.87 -0.27 -8.49 16 19 C 0.55 7.11 7.76 -12.42 -0.10 7.02 16 20 O -0.51 -8.09 13.61 5.30 0.07 -8.02 16 21 C -0.14 -1.46 5.88 -104.94 -0.62 -2.08 16 22 C -0.04 -0.35 9.53 -39.20 -0.37 -0.72 16 23 C -0.16 -1.15 10.01 -39.57 -0.40 -1.54 16 24 C 0.14 1.13 7.30 -39.29 -0.29 0.85 16 25 F -0.13 -1.12 17.26 2.25 0.04 -1.08 16 26 C -0.16 -1.39 9.79 -39.54 -0.39 -1.77 16 27 C 0.04 0.42 6.35 -39.08 -0.25 0.18 16 28 Cl -0.02 -0.18 26.02 -51.86 -1.35 -1.53 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.82 7.63 -40.82 -0.31 9.50 16 31 H 0.02 0.42 7.95 -51.93 -0.41 0.01 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.15 7.71 -51.93 -0.40 0.75 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 3.72 6.59 -40.82 -0.27 3.45 16 40 H 0.15 0.86 6.40 -52.49 -0.34 0.52 16 41 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -31.96 366.77 -9.64 -41.60 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.46 Total: 7.31 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -3.57 Total: -7.25 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.12 Total: -53.85 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.07 Total: -8.02 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.96 -9.64 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667769105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.619 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds