Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99861 * 2 1 4 4 H 1.48507 * 109.47250 * 270.00091 * 3 2 1 5 5 H 1.48498 * 109.47477 * 30.00396 * 3 2 1 6 6 H 1.48500 * 109.47247 * 150.00517 * 3 2 1 7 7 C 1.38811 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99984 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00253 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00068 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47096 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.43824 * 52.45612 * 11 10 9 13 13 C 1.54268 * 110.48772 * 289.77633 * 11 10 9 14 14 C 1.53873 * 106.60209 * 217.71220 * 13 11 10 15 15 C 1.54268 * 106.59522 * 0.02562 * 14 13 11 16 16 C 1.54883 * 104.19999 * 23.60832 * 15 14 13 17 17 H 1.09000 * 110.91719 * 80.44475 * 16 15 14 18 18 N 1.46498 * 110.76102 * 203.74599 * 16 15 14 19 19 C 1.34773 * 120.00119 * 268.33014 * 18 16 15 20 20 O 1.21579 * 120.00033 * 359.97438 * 19 18 16 21 21 C 1.47649 * 120.00084 * 179.97438 * 19 18 16 22 22 C 1.39695 * 120.12960 * 359.97438 * 21 19 18 23 23 C 1.37785 * 119.89118 * 179.97438 * 22 21 19 24 24 C 1.38713 * 120.15513 * 0.02562 * 23 22 21 25 25 F 1.35107 * 119.86922 * 179.97438 * 24 23 22 26 26 C 1.38562 * 120.26667 * 0.02562 * 24 23 22 27 27 C 1.38033 * 120.10270 * 359.97438 * 26 24 23 28 28 Cl 1.73602 * 120.08005 * 179.97438 * 27 26 24 29 29 H 0.96997 * 120.00536 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00370 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46887 * 60.00907 * 10 9 7 32 32 H 1.08999 * 109.47359 * 300.00320 * 10 9 7 33 33 H 1.09006 * 110.02905 * 336.99884 * 13 11 10 34 34 H 1.08999 * 110.03239 * 98.37782 * 13 11 10 35 35 H 1.09008 * 110.03008 * 119.27852 * 14 13 11 36 36 H 1.08995 * 110.03479 * 240.66724 * 14 13 11 37 37 H 1.09004 * 110.48192 * 264.93220 * 15 14 13 38 38 H 1.08997 * 110.48532 * 142.29136 * 15 14 13 39 39 H 0.96999 * 119.99871 * 88.32060 * 18 16 15 40 40 H 1.07996 * 120.05369 * 0.25957 * 22 21 19 41 41 H 1.07999 * 119.92088 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.95109 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.3431 -4.7040 -0.8115 13 6 0.3419 -4.9133 1.3580 14 6 0.1761 -6.4119 1.6656 15 6 0.8038 -7.1766 0.4820 16 6 1.8109 -6.1710 -0.1290 17 1 2.7393 -6.1545 0.4419 18 7 2.0737 -6.4884 -1.5348 19 6 3.1000 -7.2983 -1.8623 20 8 3.8080 -7.7650 -0.9910 21 6 3.3646 -7.6187 -3.2791 22 6 2.5525 -7.0844 -4.2823 23 6 2.8041 -7.3863 -5.6029 24 6 3.8612 -8.2195 -5.9380 25 9 4.1025 -8.5121 -7.2348 26 6 4.6702 -8.7539 -4.9481 27 6 4.4279 -8.4587 -3.6217 28 17 5.4415 -9.1291 -2.3819 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6853 -3.7149 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 0.9425 -4.4372 2.1331 34 1 -0.6351 -4.4339 1.2959 35 1 0.6965 -6.6630 2.5900 36 1 -0.8815 -6.6603 1.7534 37 1 0.0397 -7.4427 -0.2485 38 1 1.3218 -8.0681 0.8355 39 1 1.5090 -6.1159 -2.2299 40 1 1.7316 -6.4321 -4.0235 41 1 2.1763 -6.9738 -6.3789 42 1 5.4921 -9.4017 -5.2148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667769105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -73.012803 kcal Electronic energy + Delta-G solvation = -26584.311361 eV Core-core repulsion = 22503.765701 eV Total energy + Delta-G solvation = -4080.545661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.11937 -41.44462 -39.92426 -38.75873 -37.48530 -36.28609 -34.86569 -33.29234 -32.25457 -31.84735 -30.16455 -28.58705 -26.33321 -24.97223 -24.21456 -23.76052 -21.97923 -21.58513 -20.71703 -19.48569 -19.03564 -18.45222 -17.97314 -17.19464 -16.83879 -16.62076 -16.26901 -16.07709 -15.90280 -15.78489 -15.17225 -15.09654 -14.93924 -14.72401 -14.55542 -14.29957 -14.05479 -13.99128 -13.49745 -13.14025 -13.08939 -12.79736 -12.51356 -12.44019 -12.34684 -12.20923 -12.11230 -12.03577 -11.86335 -11.63454 -11.57248 -11.23987 -10.92514 -10.67652 -10.22415 -10.09767 -9.80950 -8.98262 -7.94716 -5.22607 -0.58094 -0.11026 0.96870 1.47866 1.48558 1.57203 1.63229 2.06238 2.49118 2.56095 2.99409 3.38327 3.45274 3.46215 3.62943 3.70673 3.79732 3.89599 3.97744 4.19634 4.22741 4.44858 4.49033 4.52316 4.55989 4.61699 4.70685 4.72074 4.75160 4.89371 4.91236 5.00009 5.06556 5.17906 5.23504 5.28721 5.33707 5.48265 5.48577 5.52712 5.61748 6.27966 6.50680 7.18012 7.35194 8.10287 8.35723 9.28341 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.002845 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.072902 B = 9839.525133 C =11185.579099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.090 4.090 12 H 0.088 0.912 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.121 4.121 16 C 0.154 3.846 17 H 0.078 0.922 18 N -0.703 5.703 19 C 0.552 3.448 20 O -0.550 6.550 21 C -0.153 4.153 22 C -0.036 4.036 23 C -0.146 4.146 24 C 0.135 3.865 25 F -0.129 7.129 26 C -0.158 4.158 27 C 0.025 3.975 28 Cl -0.036 7.036 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.009 0.991 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.411 0.589 40 H 0.172 0.828 41 H 0.178 0.822 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -21.679 -10.846 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.036 3.964 11 C -0.110 4.110 12 H 0.106 0.894 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.160 4.160 16 C 0.049 3.951 17 H 0.097 0.903 18 N -0.355 5.355 19 C 0.339 3.661 20 O -0.428 6.428 21 C -0.157 4.157 22 C -0.055 4.055 23 C -0.165 4.165 24 C 0.115 3.885 25 F -0.107 7.107 26 C -0.177 4.177 27 C -0.003 4.003 28 Cl -0.006 7.006 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.027 0.973 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.249 0.751 40 H 0.190 0.810 41 H 0.195 0.805 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.610 -21.975 -10.131 24.465 hybrid contribution 0.192 1.247 -0.262 1.289 sum 3.803 -20.728 -10.393 23.497 Atomic orbital electron populations 1.69787 1.06352 1.26061 1.59344 1.25471 0.96380 1.00749 1.03637 0.85216 0.77666 0.79834 0.77505 1.21242 1.22041 1.19934 1.19569 0.91281 0.85592 1.41412 0.91358 1.42467 1.05625 1.00772 1.89280 1.20783 0.93650 0.85030 0.96969 1.22273 0.96959 0.92430 0.99294 0.89367 1.22025 1.00188 0.97097 0.95650 1.22046 1.01761 0.93213 0.98114 1.22631 0.97893 0.97498 0.97977 1.21870 0.98418 0.93432 0.81392 0.90345 1.45784 1.31709 1.48893 1.09096 1.18244 0.80539 0.79002 0.88281 1.90859 1.48285 1.52816 1.50882 1.19887 0.98834 1.02814 0.94203 1.21459 0.97472 0.95803 0.90729 1.21514 0.97877 0.98877 0.98211 1.17807 0.95761 0.96851 0.78079 1.91562 1.93778 1.91661 1.33736 1.21084 1.02882 1.04109 0.89649 1.20827 0.93029 0.96160 0.90294 1.98433 1.66258 1.83153 1.52796 0.93934 0.79058 0.97301 0.96715 0.93132 0.91883 0.91459 0.90040 0.89792 0.91474 0.75091 0.81048 0.80479 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.72 13.06 21.65 0.28 -57.43 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.25 -13.73 9.99 84.03 0.84 -12.89 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -36.54 5.49 -343.44 -1.89 -38.42 16 10 C 0.16 6.37 5.59 86.38 0.48 6.85 16 11 C -0.09 -2.62 2.51 -9.71 -0.02 -2.64 16 12 H 0.09 2.43 8.02 -2.39 -0.02 2.41 16 13 C -0.11 -3.15 6.23 31.32 0.20 -2.95 16 14 C -0.11 -2.43 6.80 31.32 0.21 -2.22 16 15 C -0.12 -2.55 6.51 31.67 0.21 -2.34 16 16 C 0.15 3.89 2.69 46.29 0.12 4.01 16 17 H 0.08 2.38 7.46 -2.39 -0.02 2.36 16 18 N -0.70 -15.30 5.13 -439.45 -2.25 -17.55 16 19 C 0.55 13.81 7.76 86.73 0.67 14.48 16 20 O -0.55 -17.46 13.61 -3.96 -0.05 -17.52 16 21 C -0.15 -3.08 5.88 -20.07 -0.12 -3.20 16 22 C -0.04 -0.48 9.53 22.51 0.21 -0.26 16 23 C -0.15 -1.68 10.01 22.28 0.22 -1.46 16 24 C 0.13 1.94 7.30 22.46 0.16 2.11 16 25 F -0.13 -1.95 17.26 44.97 0.78 -1.17 16 26 C -0.16 -2.53 9.79 22.30 0.22 -2.32 16 27 C 0.03 0.52 6.35 22.59 0.14 0.66 16 28 Cl -0.04 -0.86 26.02 -2.72 -0.07 -0.94 16 29 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.38 19.46 7.63 -92.71 -0.71 18.75 16 31 H 0.01 0.38 7.95 -2.39 -0.02 0.36 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 1.63 7.71 -2.38 -0.02 1.62 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.41 6.72 6.59 -92.71 -0.61 6.11 16 40 H 0.17 1.39 6.40 -2.91 -0.02 1.37 16 41 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -69.11 366.77 2.60 -66.52 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.25 Total: 24.32 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 4.02 Total: -5.66 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.86 Total: -113.41 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.05 Total: -17.52 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.07 Total: -0.94 kcal Total: -69.11 2.60 -66.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667769105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.496 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds