Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00147 * 2 1 4 4 H 1.48505 * 109.47198 * 240.00467 * 3 2 1 5 5 H 1.48502 * 109.46547 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47284 * 120.00232 * 3 2 1 7 7 C 1.38810 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00005 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46961 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.54155 * 307.61317 * 11 10 9 13 13 C 1.54892 * 110.48613 * 70.22483 * 11 10 9 14 14 C 1.54893 * 102.74823 * 156.61898 * 13 11 10 15 15 C 1.54265 * 104.19617 * 322.05810 * 14 13 11 16 16 C 1.53876 * 106.59864 * 23.60840 * 15 14 13 17 17 H 1.08999 * 110.03574 * 240.66855 * 16 15 14 18 18 N 1.46507 * 110.03049 * 119.28519 * 16 15 14 19 19 C 1.34779 * 119.99793 * 86.45976 * 18 16 15 20 20 O 1.21572 * 119.99921 * 359.97438 * 19 18 16 21 21 C 1.47647 * 119.99749 * 179.97438 * 19 18 16 22 22 C 1.39702 * 120.12969 * 359.97438 * 21 19 18 23 23 C 1.37778 * 119.89109 * 180.02562 * 22 21 19 24 24 C 1.38720 * 120.15771 * 0.02562 * 23 22 21 25 25 F 1.35093 * 119.86966 * 179.97438 * 24 23 22 26 26 C 1.38563 * 120.25986 * 359.97438 * 24 23 22 27 27 C 1.38035 * 120.10796 * 0.02562 * 26 24 23 28 28 Cl 1.73605 * 120.07773 * 180.02562 * 27 26 24 29 29 H 0.96998 * 119.99836 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00262 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.46937 * 60.00285 * 10 9 7 32 32 H 1.08998 * 109.46966 * 300.00312 * 10 9 7 33 33 H 1.08995 * 110.75777 * 38.30612 * 13 11 10 34 34 H 1.09002 * 110.75629 * 274.93344 * 13 11 10 35 35 H 1.08996 * 110.48827 * 203.37666 * 14 13 11 36 36 H 1.09004 * 110.48428 * 80.73464 * 14 13 11 37 37 H 1.08994 * 110.03303 * 264.32599 * 15 14 13 38 38 H 1.09001 * 110.03348 * 142.89115 * 15 14 13 39 39 H 0.96993 * 119.99929 * 266.45354 * 18 16 15 40 40 H 1.08002 * 120.05244 * 359.97438 * 22 21 19 41 41 H 1.07999 * 119.92267 * 180.02562 * 23 22 21 42 42 H 1.08009 * 119.94554 * 180.28246 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3415 -4.7057 0.8071 13 6 0.3390 -4.9124 -1.3669 14 6 -0.1116 -6.3935 -1.4148 15 6 1.0598 -7.1663 -0.7741 16 6 1.8072 -6.1656 0.1247 17 1 2.8376 -6.0569 -0.2138 18 7 1.7820 -6.6246 1.5158 19 6 2.7253 -7.4781 1.9609 20 8 3.5968 -7.8675 1.2079 21 6 2.7003 -7.9402 3.3630 22 6 1.7004 -7.4941 4.2306 23 6 1.6820 -7.9280 5.5382 24 6 2.6541 -8.8061 5.9947 25 9 2.6308 -9.2275 7.2780 26 6 3.6487 -9.2527 5.1396 27 6 3.6775 -8.8249 3.8276 28 17 4.9237 -9.3855 2.7568 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 1.0251 -4.6908 -2.1842 34 1 -0.5228 -4.2454 -1.3929 35 1 -0.2612 -6.7136 -2.4459 36 1 -1.0238 -6.5337 -0.8348 37 1 1.7272 -7.5426 -1.5492 38 1 0.6784 -7.9933 -0.1753 39 1 1.0866 -6.3141 2.1164 40 1 0.9436 -6.8094 3.8772 41 1 0.9091 -7.5838 6.2092 42 1 4.4004 -9.9400 5.4993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667769107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -52.589077 kcal Electronic energy + Delta-G solvation = -26558.257438 eV Core-core repulsion = 22478.597416 eV Total energy + Delta-G solvation = -4079.660022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.46707 -40.56508 -39.03276 -37.69048 -36.68221 -34.52110 -33.71236 -31.54989 -31.41472 -31.12070 -28.61324 -27.55721 -24.69922 -24.03106 -23.44626 -22.13075 -21.23593 -20.13903 -19.81629 -18.53878 -17.74879 -17.25746 -16.87511 -16.24097 -16.15734 -15.50679 -15.21387 -14.95264 -14.75032 -14.41154 -14.39291 -13.92733 -13.69000 -13.56363 -13.27698 -13.18618 -13.15254 -12.83631 -12.13465 -11.87338 -11.77032 -11.68607 -11.44899 -11.28407 -10.94394 -10.84897 -10.76000 -10.48286 -10.39578 -10.34194 -10.02255 -9.72664 -9.65670 -9.54117 -9.24628 -8.95536 -8.87032 -6.92541 -5.77403 -3.05589 0.14915 0.52995 1.74028 2.43492 3.00197 3.30113 3.44083 3.48438 3.49458 3.64762 4.08793 4.35369 4.35935 4.54618 4.62031 4.72898 4.81690 4.88772 5.02487 5.21300 5.35402 5.44283 5.51667 5.52064 5.54776 5.61564 5.65590 5.76422 5.80086 5.90343 6.04504 6.10201 6.16502 6.19605 6.27300 6.51102 6.53714 6.55535 6.76692 6.88698 7.41674 7.69798 8.11967 8.41838 9.53194 10.10582 10.45714 11.45454 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.002701 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.428522 B =10365.302537 C =11359.250444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.148 3.852 17 H 0.095 0.905 18 N -0.713 5.713 19 C 0.553 3.447 20 O -0.514 6.514 21 C -0.137 4.137 22 C -0.044 4.044 23 C -0.157 4.157 24 C 0.136 3.864 25 F -0.128 7.128 26 C -0.159 4.159 27 C 0.040 3.960 28 Cl -0.015 7.015 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.398 0.602 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -22.070 9.129 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.097 0.903 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.044 3.956 17 H 0.113 0.887 18 N -0.364 5.364 19 C 0.339 3.661 20 O -0.390 6.390 21 C -0.141 4.141 22 C -0.063 4.063 23 C -0.176 4.176 24 C 0.116 3.884 25 F -0.107 7.107 26 C -0.179 4.179 27 C 0.011 3.989 28 Cl 0.015 6.985 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.241 -22.284 8.507 23.957 hybrid contribution -0.102 1.016 0.629 1.199 sum 2.139 -21.268 9.135 23.245 Atomic orbital electron populations 1.69640 1.05078 1.25729 1.57889 1.24715 0.95515 0.97626 1.03066 0.86278 0.78538 0.83561 0.77888 1.21262 1.21695 1.21296 1.19190 0.91019 0.84207 1.42595 0.91312 1.42312 1.05783 0.99849 1.89510 1.20684 0.92910 0.85163 0.97926 1.22433 0.97878 0.93165 0.98620 0.90286 1.22458 1.00517 0.95231 0.96633 1.22392 0.97582 0.95957 1.00358 1.22538 0.97540 0.97863 0.98979 1.21748 1.01348 0.92979 0.79573 0.88681 1.46106 1.30108 1.46908 1.13315 1.17913 0.82173 0.79646 0.86404 1.90878 1.35470 1.55861 1.56780 1.19952 0.97328 1.01085 0.95765 1.21212 0.96333 0.96686 0.92032 1.21205 0.99986 0.99188 0.97175 1.17687 0.95800 0.95888 0.79054 1.91553 1.96000 1.88312 1.34804 1.20981 1.00785 1.04107 0.92020 1.20715 0.91640 0.95384 0.91116 1.98446 1.49511 1.87025 1.63567 0.93503 0.78283 0.96460 0.96087 0.91009 0.90699 0.91806 0.91872 0.91240 0.91738 0.76672 0.83423 0.83268 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.97 5.49 -59.91 -0.33 -18.29 16 10 C 0.16 3.15 5.54 -4.04 -0.02 3.13 16 11 C -0.10 -1.51 2.58 -88.96 -0.23 -1.74 16 12 H 0.08 1.14 7.73 -51.93 -0.40 0.74 16 13 C -0.11 -1.57 6.19 -24.73 -0.15 -1.72 16 14 C -0.13 -1.42 6.83 -25.07 -0.17 -1.59 16 15 C -0.13 -1.52 6.59 -25.61 -0.17 -1.69 16 16 C 0.15 1.94 2.79 -66.81 -0.19 1.75 16 17 H 0.10 1.43 7.30 -51.93 -0.38 1.06 16 18 N -0.71 -8.17 4.94 -53.72 -0.27 -8.44 16 19 C 0.55 7.05 7.75 -12.42 -0.10 6.95 16 20 O -0.51 -8.06 13.64 5.30 0.07 -7.99 16 21 C -0.14 -1.44 5.88 -104.94 -0.62 -2.06 16 22 C -0.04 -0.34 9.53 -39.20 -0.37 -0.72 16 23 C -0.16 -1.12 10.01 -39.57 -0.40 -1.52 16 24 C 0.14 1.11 7.30 -39.28 -0.29 0.83 16 25 F -0.13 -1.10 17.26 2.25 0.04 -1.06 16 26 C -0.16 -1.37 9.79 -39.54 -0.39 -1.76 16 27 C 0.04 0.42 6.35 -39.09 -0.25 0.17 16 28 Cl -0.02 -0.18 26.02 -51.86 -1.35 -1.53 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.38 9.79 7.64 -40.82 -0.31 9.48 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 33 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.40 3.63 6.37 -40.82 -0.26 3.37 16 40 H 0.15 0.82 6.40 -52.49 -0.34 0.48 16 41 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -31.98 366.22 -9.63 -41.61 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.43 Total: 7.19 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.58 Total: -7.23 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.13 Total: -53.82 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.07 Total: -7.99 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.98 -9.63 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667769107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.977 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds