Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00147 * 2 1 4 4 H 1.48505 * 109.47198 * 240.00467 * 3 2 1 5 5 H 1.48502 * 109.46547 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47284 * 120.00232 * 3 2 1 7 7 C 1.38810 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00005 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46961 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.54155 * 307.61317 * 11 10 9 13 13 C 1.54892 * 110.48613 * 70.22483 * 11 10 9 14 14 C 1.54893 * 102.74823 * 156.61898 * 13 11 10 15 15 C 1.54265 * 104.19617 * 322.05810 * 14 13 11 16 16 C 1.53876 * 106.59864 * 23.60840 * 15 14 13 17 17 H 1.08999 * 110.03574 * 240.66855 * 16 15 14 18 18 N 1.46507 * 110.03049 * 119.28519 * 16 15 14 19 19 C 1.34779 * 119.99793 * 86.45976 * 18 16 15 20 20 O 1.21572 * 119.99921 * 359.97438 * 19 18 16 21 21 C 1.47647 * 119.99749 * 179.97438 * 19 18 16 22 22 C 1.39702 * 120.12969 * 359.97438 * 21 19 18 23 23 C 1.37778 * 119.89109 * 180.02562 * 22 21 19 24 24 C 1.38720 * 120.15771 * 0.02562 * 23 22 21 25 25 F 1.35093 * 119.86966 * 179.97438 * 24 23 22 26 26 C 1.38563 * 120.25986 * 359.97438 * 24 23 22 27 27 C 1.38035 * 120.10796 * 0.02562 * 26 24 23 28 28 Cl 1.73605 * 120.07773 * 180.02562 * 27 26 24 29 29 H 0.96998 * 119.99836 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00262 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.46937 * 60.00285 * 10 9 7 32 32 H 1.08998 * 109.46966 * 300.00312 * 10 9 7 33 33 H 1.08995 * 110.75777 * 38.30612 * 13 11 10 34 34 H 1.09002 * 110.75629 * 274.93344 * 13 11 10 35 35 H 1.08996 * 110.48827 * 203.37666 * 14 13 11 36 36 H 1.09004 * 110.48428 * 80.73464 * 14 13 11 37 37 H 1.08994 * 110.03303 * 264.32599 * 15 14 13 38 38 H 1.09001 * 110.03348 * 142.89115 * 15 14 13 39 39 H 0.96993 * 119.99929 * 266.45354 * 18 16 15 40 40 H 1.08002 * 120.05244 * 359.97438 * 22 21 19 41 41 H 1.07999 * 119.92267 * 180.02562 * 23 22 21 42 42 H 1.08009 * 119.94554 * 180.28246 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3415 -4.7057 0.8071 13 6 0.3390 -4.9124 -1.3669 14 6 -0.1116 -6.3935 -1.4148 15 6 1.0598 -7.1663 -0.7741 16 6 1.8072 -6.1656 0.1247 17 1 2.8376 -6.0569 -0.2138 18 7 1.7820 -6.6246 1.5158 19 6 2.7253 -7.4781 1.9609 20 8 3.5968 -7.8675 1.2079 21 6 2.7003 -7.9402 3.3630 22 6 1.7004 -7.4941 4.2306 23 6 1.6820 -7.9280 5.5382 24 6 2.6541 -8.8061 5.9947 25 9 2.6308 -9.2275 7.2780 26 6 3.6487 -9.2527 5.1396 27 6 3.6775 -8.8249 3.8276 28 17 4.9237 -9.3855 2.7568 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 1.0251 -4.6908 -2.1842 34 1 -0.5228 -4.2454 -1.3929 35 1 -0.2612 -6.7136 -2.4459 36 1 -1.0238 -6.5337 -0.8348 37 1 1.7272 -7.5426 -1.5492 38 1 0.6784 -7.9933 -0.1753 39 1 1.0866 -6.3141 2.1164 40 1 0.9436 -6.8094 3.8772 41 1 0.9091 -7.5838 6.2092 42 1 4.4004 -9.9400 5.4993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667769107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -71.342639 kcal Electronic energy + Delta-G solvation = -26559.070654 eV Core-core repulsion = 22478.597416 eV Total energy + Delta-G solvation = -4080.473237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.12338 -41.47759 -39.94745 -38.74264 -37.48624 -36.30206 -34.80300 -33.28720 -32.24717 -31.84614 -30.18665 -28.58104 -26.34880 -24.98652 -24.21853 -23.71957 -22.16985 -21.29559 -20.85700 -19.49001 -19.01242 -18.42622 -17.96118 -17.22750 -16.83782 -16.56431 -16.28151 -16.21209 -15.82149 -15.70724 -15.20429 -15.13147 -15.03587 -14.68228 -14.54301 -14.38173 -14.04965 -14.00745 -13.45060 -13.14217 -12.87793 -12.73880 -12.54960 -12.44103 -12.41412 -12.22453 -12.15574 -11.93400 -11.82411 -11.60320 -11.57016 -11.39973 -10.91733 -10.66192 -10.22926 -10.11742 -9.81869 -8.98313 -7.94589 -5.22492 -0.58144 -0.11143 0.96820 1.47859 1.49958 1.56207 1.63475 2.06903 2.49224 2.56352 2.99398 3.38342 3.44507 3.46374 3.61850 3.70918 3.79690 3.91718 3.97935 4.17302 4.22135 4.43716 4.50634 4.53719 4.59755 4.64293 4.69402 4.72016 4.77077 4.88967 4.91061 5.01782 5.04861 5.13419 5.21226 5.27546 5.35984 5.48103 5.48444 5.53095 5.62869 6.28048 6.50718 7.18505 7.35324 8.10214 8.35915 9.28290 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.002701 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.428522 B =10365.302537 C =11359.250444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.090 4.090 12 H 0.089 0.911 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.072 0.928 18 N -0.704 5.704 19 C 0.551 3.449 20 O -0.550 6.550 21 C -0.153 4.153 22 C -0.036 4.036 23 C -0.146 4.146 24 C 0.135 3.865 25 F -0.129 7.129 26 C -0.158 4.158 27 C 0.025 3.975 28 Cl -0.036 7.036 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.011 0.989 32 H 0.012 0.988 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.411 0.589 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 -22.644 10.354 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.109 4.109 12 H 0.107 0.893 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.161 4.161 16 C 0.051 3.949 17 H 0.090 0.910 18 N -0.357 5.357 19 C 0.338 3.662 20 O -0.428 6.428 21 C -0.158 4.158 22 C -0.055 4.055 23 C -0.165 4.165 24 C 0.115 3.885 25 F -0.107 7.107 26 C -0.178 4.178 27 C -0.003 4.003 28 Cl -0.007 7.007 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.249 0.751 40 H 0.190 0.810 41 H 0.196 0.804 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.326 -22.879 9.749 24.905 hybrid contribution 0.207 1.166 0.310 1.224 sum 1.533 -21.713 10.059 23.979 Atomic orbital electron populations 1.69778 1.06342 1.26153 1.59243 1.25472 0.96389 1.00748 1.03572 0.85287 0.77320 0.79524 0.78079 1.20698 1.21862 1.20536 1.19543 0.91306 0.85612 1.41608 0.91354 1.42448 1.05628 1.00723 1.89308 1.20774 0.93673 0.85089 0.96943 1.22270 0.96986 0.92078 0.99555 0.89328 1.22411 0.99627 0.97297 0.95618 1.22321 0.97838 0.93235 1.01529 1.22464 0.97378 0.97616 0.98663 1.21499 0.99990 0.92513 0.80908 0.91008 1.45976 1.30310 1.46525 1.12874 1.18261 0.81575 0.79221 0.87154 1.90860 1.36827 1.57204 1.57927 1.19894 0.98728 1.02177 0.94952 1.21464 0.95773 0.96381 0.91835 1.21517 0.99891 0.97899 0.97144 1.17808 0.95876 0.95934 0.78889 1.91558 1.95991 1.88349 1.34836 1.21087 1.01277 1.04084 0.91307 1.20829 0.91629 0.96312 0.91568 1.98434 1.50508 1.87348 1.64393 0.93906 0.79013 0.97089 0.96967 0.92376 0.91979 0.90497 0.90258 0.91488 0.90603 0.75115 0.80981 0.80431 0.81766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.70 13.06 21.65 0.28 -57.41 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -36.61 5.49 -343.45 -1.89 -38.49 16 10 C 0.16 6.39 5.54 86.38 0.48 6.87 16 11 C -0.09 -2.60 2.58 -9.72 -0.03 -2.62 16 12 H 0.09 2.43 7.73 -2.39 -0.02 2.41 16 13 C -0.11 -3.09 6.19 31.89 0.20 -2.90 16 14 C -0.11 -2.29 6.83 31.67 0.22 -2.07 16 15 C -0.12 -2.65 6.59 31.32 0.21 -2.44 16 16 C 0.16 3.97 2.79 45.71 0.13 4.09 16 17 H 0.07 2.20 7.30 -2.39 -0.02 2.18 16 18 N -0.70 -15.20 4.94 -442.14 -2.19 -17.38 16 19 C 0.55 13.68 7.75 86.73 0.67 14.35 16 20 O -0.55 -17.44 13.64 -3.94 -0.05 -17.50 16 21 C -0.15 -3.04 5.88 -20.07 -0.12 -3.16 16 22 C -0.04 -0.46 9.53 22.51 0.21 -0.25 16 23 C -0.15 -1.62 10.01 22.28 0.22 -1.39 16 24 C 0.13 1.90 7.30 22.46 0.16 2.06 16 25 F -0.13 -1.91 17.26 44.97 0.78 -1.13 16 26 C -0.16 -2.51 9.79 22.30 0.22 -2.29 16 27 C 0.02 0.51 6.35 22.59 0.14 0.65 16 28 Cl -0.04 -0.87 26.02 -2.72 -0.07 -0.94 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.38 19.45 7.64 -92.71 -0.71 18.75 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.01 0.51 8.02 -2.39 -0.02 0.49 16 33 H 0.06 1.76 7.96 -2.39 -0.02 1.74 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.50 7.92 -2.39 -0.02 1.49 16 39 H 0.41 6.54 6.37 -92.71 -0.59 5.95 16 40 H 0.17 1.28 6.40 -2.91 -0.02 1.27 16 41 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -69.26 366.22 2.69 -66.57 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.23 Total: 24.00 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.03 Total: -5.60 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -3.79 Total: -113.29 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.05 Total: -17.50 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.13 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.07 Total: -0.94 kcal Total: -69.26 2.69 -66.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667769107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.768 kcal (2) G-P(sol) polarization free energy of solvation -69.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds