Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 110.64175 * 2 1 4 4 C 1.34782 * 119.99810 * 300.70201 * 3 2 1 5 5 O 1.21277 * 120.00544 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99713 * 179.97438 * 4 3 2 7 7 C 1.50698 * 109.47281 * 180.02562 * 6 4 3 8 8 C 1.38459 * 120.01909 * 89.99855 * 7 6 4 9 9 F 1.35103 * 120.01808 * 359.97438 * 8 7 6 10 10 C 1.38441 * 119.96512 * 180.02562 * 8 7 6 11 11 C 1.38223 * 120.00050 * 0.02562 * 10 8 7 12 12 C 1.38209 * 120.03826 * 359.97438 * 11 10 8 13 13 C 1.38289 * 120.02254 * 270.27606 * 7 6 4 14 14 Cl 1.73599 * 119.99841 * 0.02562 * 13 7 6 15 15 C 1.55152 * 110.72368 * 123.14827 * 2 1 3 16 16 C 1.55380 * 101.36675 * 153.94468 * 15 2 1 17 17 N 1.47422 * 104.87492 * 323.01439 * 16 15 2 18 18 C 1.36942 * 125.64688 * 204.09977 * 17 16 15 19 19 H 1.08000 * 119.99848 * 180.02562 * 18 17 16 20 20 C 1.38808 * 119.99970 * 0.04199 * 18 17 16 21 21 N 1.31612 * 120.00369 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99577 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47219 * 90.00000 * 22 20 18 24 24 H 1.48500 * 109.46891 * 209.99676 * 22 20 18 25 25 H 1.48497 * 109.47273 * 329.99190 * 22 20 18 26 26 C 1.47015 * 108.70354 * 24.13338 * 17 16 15 27 27 H 1.08997 * 109.47136 * 59.29463 * 1 2 3 28 28 H 1.08994 * 109.47230 * 179.29909 * 1 2 3 29 29 H 1.09001 * 109.46550 * 299.29460 * 1 2 3 30 30 H 0.96997 * 120.00592 * 120.70682 * 3 2 1 31 31 H 1.08994 * 109.47167 * 60.00308 * 6 4 3 32 32 H 1.09004 * 109.47416 * 300.00631 * 6 4 3 33 33 H 1.08006 * 120.00565 * 180.02562 * 10 8 7 34 34 H 1.08007 * 119.98402 * 179.97438 * 11 10 8 35 35 H 1.08002 * 119.97964 * 179.97438 * 12 11 10 36 36 H 1.09007 * 111.00134 * 272.11424 * 15 2 1 37 37 H 1.08998 * 111.00633 * 35.96081 * 15 2 1 38 38 H 1.09009 * 110.34063 * 204.16142 * 16 15 2 39 39 H 1.09005 * 110.35261 * 81.86889 * 16 15 2 40 40 H 0.96998 * 120.00301 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.88452 * 239.52482 * 26 17 16 42 42 H 1.08998 * 109.88503 * 118.35879 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7263 2.2116 -1.0037 5 8 1.0104 1.8334 -1.9065 6 6 2.2571 3.6221 -1.0033 7 6 1.7550 4.3481 -2.2247 8 6 0.5595 5.0447 -2.1738 9 9 -0.1578 5.0735 -1.0292 10 6 0.0989 5.7108 -3.2966 11 6 0.8322 5.6798 -4.4679 12 6 2.0256 4.9845 -4.5188 13 6 2.4850 4.3142 -3.3987 14 17 3.9802 3.4346 -3.4660 15 6 2.0791 -0.7935 1.2150 16 6 3.4674 -1.2455 0.6835 17 7 3.2470 -1.5461 -0.7429 18 6 4.0076 -2.3900 -1.5074 19 1 3.7632 -2.5437 -2.5481 20 6 5.0926 -3.0481 -0.9448 21 7 5.3906 -2.8607 0.3234 22 14 6.1305 -4.1988 -1.9880 23 1 7.2372 -3.4340 -2.6169 24 1 6.6951 -5.2711 -1.1298 25 1 5.2843 -4.8061 -3.0465 26 6 2.0760 -0.7891 -1.2087 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0275 -0.0126 29 1 -0.3632 0.5029 0.8963 30 1 2.6189 1.6736 0.7222 31 1 3.3468 3.6002 -1.0157 32 1 1.9143 4.1392 -0.1071 33 1 -0.8333 6.2548 -3.2575 34 1 0.4725 6.1993 -5.3439 35 1 2.5976 4.9606 -5.4346 36 1 2.1822 -0.1491 2.0881 37 1 1.4470 -1.6530 1.4382 38 1 3.8032 -2.1379 1.2118 39 1 4.1956 -0.4419 0.7937 40 1 6.1490 -3.3203 0.7165 41 1 1.3139 -1.4753 -1.5782 42 1 2.3710 -0.0991 -1.9992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671689228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -53.580606 kcal Electronic energy + Delta-G solvation = -27809.727442 eV Core-core repulsion = 23730.024424 eV Total energy + Delta-G solvation = -4079.703018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01296 -41.41106 -40.16840 -38.77516 -37.51001 -35.73029 -34.22115 -33.47867 -31.69608 -31.42632 -30.36032 -28.63124 -27.55176 -25.43871 -23.91459 -23.54477 -22.28871 -21.67933 -20.44981 -19.04868 -18.76152 -18.11021 -17.91181 -17.28897 -16.85655 -16.61402 -16.58832 -16.07934 -15.78099 -15.58824 -15.28083 -14.78847 -14.65058 -14.41039 -14.28686 -14.05324 -13.99693 -13.72693 -13.37449 -13.31371 -13.07617 -12.87425 -12.78034 -12.63781 -12.45779 -12.38458 -12.10162 -12.04057 -11.96571 -11.91511 -11.69372 -11.53701 -10.76327 -10.72011 -10.00850 -9.86142 -9.73000 -8.89173 -7.79629 -5.22926 -0.04299 0.01040 1.01748 1.43628 1.44971 1.54101 1.67056 2.14256 2.46879 2.51707 3.19447 3.29717 3.37826 3.59692 3.67989 3.71775 3.88598 3.95185 4.01877 4.16801 4.21087 4.33306 4.39165 4.52548 4.62640 4.66261 4.80074 4.83679 4.87651 4.91968 5.01014 5.02952 5.08499 5.09731 5.20328 5.32412 5.41689 5.60915 5.69423 5.71355 5.80023 6.30163 6.61826 7.10452 7.30479 7.76431 8.40135 9.21699 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.003584 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.790575 B = 7810.268081 C = 9087.637152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.171 3.829 3 N -0.704 5.704 4 C 0.519 3.481 5 O -0.562 6.562 6 C -0.105 4.105 7 C -0.108 4.108 8 C 0.105 3.895 9 F -0.138 7.138 10 C -0.147 4.147 11 C -0.069 4.069 12 C -0.124 4.124 13 C -0.017 4.017 14 Cl -0.067 7.067 15 C -0.128 4.128 16 C 0.156 3.844 17 N -0.622 5.622 18 C -0.242 4.242 19 H 0.068 0.932 20 C -0.059 4.059 21 N -0.943 5.943 22 Si 0.976 3.024 23 H -0.288 1.288 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.139 3.861 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.410 0.590 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.158 0.842 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.076 0.924 39 H -0.007 1.007 40 H 0.249 0.751 41 H 0.018 0.982 42 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 21.181 -2.951 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.084 3.916 3 N -0.356 5.356 4 C 0.306 3.694 5 O -0.441 6.441 6 C -0.145 4.145 7 C -0.110 4.110 8 C 0.085 3.915 9 F -0.116 7.116 10 C -0.165 4.165 11 C -0.087 4.087 12 C -0.142 4.142 13 C -0.044 4.044 14 Cl -0.038 7.038 15 C -0.166 4.166 16 C 0.032 3.968 17 N -0.348 5.348 18 C -0.371 4.371 19 H 0.086 0.914 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.213 1.213 25 H -0.199 1.199 26 C 0.013 3.987 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.246 0.754 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.186 0.814 34 H 0.199 0.801 35 H 0.175 0.825 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.011 0.989 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -10.229 20.680 -3.531 23.340 hybrid contribution 1.297 -0.909 -0.014 1.584 sum -8.932 19.770 -3.545 21.982 Atomic orbital electron populations 1.21951 0.92364 1.02636 1.02893 1.21135 0.94170 0.80913 0.95349 1.45882 1.52087 1.11497 1.26167 1.20633 0.80068 0.87412 0.81282 1.90653 1.38651 1.78199 1.36598 1.20669 1.03749 0.91800 0.98274 1.19205 0.95454 1.00783 0.95532 1.17520 0.90065 1.00223 0.83678 1.91486 1.76807 1.95029 1.48321 1.21591 1.02700 1.00774 0.91456 1.21403 0.92208 0.96638 0.98418 1.21455 0.98012 0.97319 0.97463 1.20813 0.90021 0.98230 0.95364 1.98414 1.32134 1.74939 1.98349 1.23285 0.97516 0.99683 0.96135 1.21831 0.92213 0.98665 0.84136 1.44762 1.31069 1.50533 1.08458 1.19349 1.06981 1.17620 0.93162 0.91432 1.25511 0.99756 1.02181 0.97695 1.70002 1.30047 1.47146 1.12061 0.85122 0.78529 0.78279 0.77675 1.21513 1.21268 1.19894 1.21641 0.88932 0.92599 0.95542 0.92392 0.91466 0.90451 0.75365 0.86662 0.85128 0.81448 0.80097 0.82462 0.87995 0.89930 0.90622 0.98888 0.94158 0.96436 0.97437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.41 71.98 0.61 -3.75 16 2 C 0.17 6.10 0.80 4.79 0.00 6.11 16 3 N -0.70 -22.00 5.15 -417.56 -2.15 -24.14 16 4 C 0.52 16.73 7.04 87.66 0.62 17.35 16 5 O -0.56 -22.04 12.98 -3.02 -0.04 -22.08 16 6 C -0.11 -2.62 5.25 29.10 0.15 -2.46 16 7 C -0.11 -2.71 4.38 -19.80 -0.09 -2.80 16 8 C 0.10 2.36 7.24 22.37 0.16 2.52 16 9 F -0.14 -3.26 16.48 44.97 0.74 -2.51 16 10 C -0.15 -2.37 10.03 22.31 0.22 -2.15 16 11 C -0.07 -0.93 10.04 22.26 0.22 -0.71 16 12 C -0.12 -2.26 9.83 22.30 0.22 -2.04 16 13 C -0.02 -0.43 6.31 22.32 0.14 -0.29 16 14 Cl -0.07 -1.90 27.30 -2.72 -0.07 -1.97 16 15 C -0.13 -4.49 6.11 32.15 0.20 -4.29 16 16 C 0.16 7.56 5.88 87.02 0.51 8.07 16 17 N -0.62 -33.53 3.40 -691.03 -2.35 -35.88 16 18 C -0.24 -14.30 10.27 84.03 0.86 -13.44 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 21 N -0.94 -56.03 10.09 21.65 0.22 -55.81 16 22 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 26 C 0.14 6.51 6.16 86.73 0.53 7.05 16 27 H 0.06 2.01 6.20 -2.39 -0.01 2.00 16 28 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.41 10.59 8.48 -92.71 -0.79 9.80 16 31 H 0.12 2.75 6.92 -2.39 -0.02 2.73 16 32 H 0.13 2.51 7.64 -2.38 -0.02 2.49 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.10 2.82 8.06 -2.38 -0.02 2.80 16 37 H 0.08 2.84 8.05 -2.39 -0.02 2.82 16 38 H 0.08 4.17 5.87 -2.38 -0.01 4.15 16 39 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 40 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.02 0.85 7.80 -2.38 -0.02 0.83 16 42 H 0.01 0.39 6.68 -2.39 -0.02 0.38 16 Total: -1.00 -74.63 359.93 3.49 -71.14 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.28 Total: 16.10 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 4.83 Total: 6.25 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -4.28 Total: -115.83 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.04 Total: -22.08 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.74 Total: -2.51 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -74.63 3.49 -71.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671689228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.561 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds