Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 110.28887 * 2 1 4 4 N 1.46503 * 109.47238 * 60.67919 * 3 2 1 5 5 C 1.36929 * 119.99870 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00372 * 0.02562 * 5 4 3 7 7 C 1.38812 * 119.99953 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46942 * 60.00459 * 9 7 5 11 11 H 1.48504 * 109.47173 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47135 * 300.00292 * 9 7 5 13 13 C 1.54612 * 110.41579 * 237.80771 * 2 1 3 14 14 C 1.54600 * 102.91210 * 262.76130 * 13 2 1 15 15 N 1.48120 * 103.42217 * 322.86423 * 14 13 2 16 16 C 1.34773 * 127.03666 * 219.28893 * 15 14 13 17 17 O 1.21566 * 119.99624 * 355.17055 * 16 15 14 18 18 C 1.47693 * 119.99908 * 175.45577 * 16 15 14 19 19 C 1.39672 * 120.16569 * 38.06705 * 18 16 15 20 20 C 1.37845 * 119.90206 * 180.02562 * 19 18 16 21 21 C 1.38454 * 120.23549 * 359.97438 * 20 19 18 22 22 C 1.38306 * 120.32340 * 0.02562 * 21 20 19 23 23 Cl 1.73590 * 119.95248 * 180.02562 * 22 21 20 24 24 C 1.38437 * 120.08789 * 359.72115 * 22 21 20 25 25 F 1.35105 * 120.10980 * 180.27834 * 24 22 21 26 26 C 1.47495 * 105.92935 * 39.02527 * 15 14 13 27 27 H 1.09003 * 109.47176 * 299.31750 * 1 2 3 28 28 H 1.09002 * 109.47462 * 59.31754 * 1 2 3 29 29 H 1.09000 * 109.47227 * 179.32007 * 1 2 3 30 30 H 1.08999 * 109.47081 * 180.67891 * 3 2 1 31 31 H 1.09003 * 109.47003 * 300.68222 * 3 2 1 32 32 H 0.96995 * 119.99583 * 0.02562 * 4 3 2 33 33 H 0.96999 * 120.00305 * 179.97438 * 8 7 5 34 34 H 1.09002 * 110.74061 * 21.25012 * 13 2 1 35 35 H 1.09002 * 110.73984 * 144.57386 * 13 2 1 36 36 H 1.08994 * 110.61619 * 204.35425 * 14 13 2 37 37 H 1.09001 * 110.54608 * 81.34595 * 14 13 2 38 38 H 1.08003 * 120.04633 * 359.97438 * 19 18 16 39 39 H 1.08004 * 119.88493 * 179.97438 * 20 19 18 40 40 H 1.07994 * 119.84143 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.90873 * 94.14083 * 26 15 14 42 42 H 1.08997 * 109.91079 * 215.22840 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 7 1.5954 2.1277 1.2043 5 6 1.9469 3.4331 1.4221 6 1 2.5666 3.9523 0.7060 7 6 1.5067 4.0892 2.5634 8 7 0.7518 3.4565 3.4365 9 14 1.9868 5.8698 2.8610 10 1 1.4822 6.7114 1.7464 11 1 1.3940 6.3351 4.1407 12 1 3.4660 5.9783 2.9329 13 6 2.0693 -0.7720 -1.2262 14 6 2.3677 -2.1742 -0.6478 15 7 2.8825 -1.8835 0.7103 16 6 3.8948 -2.5067 1.3454 17 8 4.4317 -3.4701 0.8340 18 6 4.3475 -2.0231 2.6654 19 6 3.4184 -1.5589 3.5993 20 6 3.8471 -1.1082 4.8295 21 6 5.1956 -1.1146 5.1432 22 6 6.1238 -1.5722 4.2257 23 17 7.8121 -1.5765 4.6293 24 6 5.7077 -2.0327 2.9882 25 9 6.6135 -2.4851 2.0937 26 6 2.0649 -0.7680 1.2229 27 1 -0.3634 0.5032 0.8961 28 1 -0.3634 0.5244 -0.8838 29 1 -0.3634 -1.0276 -0.0122 30 1 3.1503 1.4196 -0.0122 31 1 1.6946 1.9578 -0.8838 32 1 1.0385 1.6616 1.8472 33 1 0.4445 3.9148 4.2342 34 1 1.3135 -0.8286 -2.0097 35 1 2.9824 -0.3103 -1.6020 36 1 3.1244 -2.6827 -1.2451 37 1 1.4553 -2.7681 -0.5942 38 1 2.3658 -1.5522 3.3576 39 1 3.1284 -0.7489 5.5513 40 1 5.5243 -0.7605 6.1090 41 1 1.2331 -1.1569 1.8102 42 1 2.6785 -0.1104 1.8386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671780696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -41.269819 kcal Electronic energy + Delta-G solvation = -27867.673448 eV Core-core repulsion = 23788.504266 eV Total energy + Delta-G solvation = -4079.169182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.01433 -40.51418 -38.96198 -37.90771 -36.66623 -34.79943 -32.89801 -31.74711 -30.65283 -30.36640 -29.13499 -26.51181 -25.84471 -24.50627 -23.21928 -22.91563 -21.84982 -19.90926 -19.00151 -17.81295 -17.52604 -17.03103 -16.83045 -16.15205 -15.76716 -15.66782 -15.12751 -14.83448 -14.64094 -14.18793 -13.89379 -13.69263 -13.48167 -13.34951 -13.14828 -12.97196 -12.74857 -12.51812 -12.22814 -12.01541 -11.90096 -11.74174 -11.62922 -11.55079 -11.23922 -11.05907 -10.88410 -10.68985 -10.49907 -10.36408 -10.08342 -9.93130 -9.69190 -9.20513 -8.94642 -8.89044 -8.66359 -6.99810 -5.84185 -3.12247 0.53304 0.80388 1.76610 2.59814 2.86488 3.36790 3.39781 3.44596 3.45465 3.85201 4.20696 4.50474 4.58503 4.62963 4.66542 4.83076 4.92013 4.97324 5.21566 5.26950 5.34422 5.48367 5.56726 5.58506 5.66058 5.73859 5.80406 5.83775 5.84206 5.86124 5.98768 6.03717 6.05063 6.23327 6.29640 6.35544 6.41853 6.56957 6.68376 6.75625 7.46604 7.64420 8.05035 8.34969 9.46973 10.02011 10.37559 11.38506 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.004518 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.057758 B = 6196.502835 C = 8499.047274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C 0.166 3.834 4 N -0.730 5.730 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.010 4.010 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.125 4.125 14 C 0.108 3.892 15 N -0.610 5.610 16 C 0.582 3.418 17 O -0.532 6.532 18 C -0.153 4.153 19 C -0.050 4.050 20 C -0.114 4.114 21 C -0.060 4.060 22 C -0.084 4.084 23 Cl -0.048 7.048 24 C 0.159 3.841 25 F -0.111 7.111 26 C 0.100 3.900 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.024 0.976 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.071 0.929 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -12.366 0.054 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 C 0.038 3.962 4 N -0.375 5.375 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.206 4.206 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.163 4.163 14 C -0.014 4.014 15 N -0.343 5.343 16 C 0.370 3.630 17 O -0.409 6.409 18 C -0.157 4.157 19 C -0.069 4.069 20 C -0.133 4.133 21 C -0.079 4.079 22 C -0.111 4.111 23 Cl -0.019 7.019 24 C 0.138 3.862 25 F -0.089 7.089 26 C -0.022 4.022 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.089 0.911 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.484 -12.786 -0.190 13.551 hybrid contribution 0.347 1.007 0.358 1.124 sum 4.832 -11.779 0.168 12.733 Atomic orbital electron populations 1.21811 0.93074 1.00734 1.03385 1.21676 0.96548 0.96443 0.93355 1.20723 0.96017 0.88230 0.91249 1.42356 1.61694 1.11346 1.22059 1.19159 1.25743 0.88179 1.03948 0.91344 1.24672 1.00404 0.98184 0.97324 1.69622 1.39782 1.36405 1.12429 0.86313 0.77967 0.85061 0.77128 1.21289 1.21674 1.21313 1.22771 1.01931 0.94302 0.97342 1.22415 0.99062 0.97459 0.82470 1.48679 1.32691 1.35102 1.17856 1.17457 0.78854 0.82628 0.84023 1.90814 1.56292 1.26475 1.67348 1.19845 0.92009 1.06948 0.96896 1.21569 1.00202 0.92822 0.92283 1.21211 0.95317 0.99468 0.97254 1.21191 0.92086 0.95734 0.98843 1.20839 0.87404 1.08026 0.94872 1.98386 1.12777 1.97294 1.93452 1.17238 0.85722 0.96908 0.86352 1.91592 1.65502 1.85724 1.66129 1.22642 0.94638 0.87604 0.97299 0.91091 0.92258 0.93336 0.96235 0.95780 0.78195 0.93480 0.89717 0.90558 0.89917 0.90848 0.83397 0.83231 0.83446 0.91101 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.04 37.15 0.30 -1.46 16 2 C -0.08 -1.12 0.68 -153.14 -0.10 -1.22 16 3 C 0.17 3.04 4.90 -4.04 -0.02 3.02 16 4 N -0.73 -16.64 4.88 -59.90 -0.29 -16.93 16 5 C -0.24 -6.28 9.99 -15.06 -0.15 -6.43 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 8 N -0.93 -26.14 13.06 55.49 0.72 -25.41 16 9 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 C -0.12 -1.47 6.16 -25.04 -0.15 -1.63 16 14 C 0.11 1.31 7.05 -2.31 -0.02 1.29 16 15 N -0.61 -8.74 3.29 -171.14 -0.56 -9.30 16 16 C 0.58 9.48 7.42 -12.40 -0.09 9.39 16 17 O -0.53 -10.11 16.44 5.31 0.09 -10.02 16 18 C -0.15 -2.28 5.51 -104.92 -0.58 -2.86 16 19 C -0.05 -0.63 7.96 -39.19 -0.31 -0.95 16 20 C -0.11 -1.27 10.03 -39.65 -0.40 -1.67 16 21 C -0.06 -0.66 9.82 -39.48 -0.39 -1.05 16 22 C -0.08 -1.10 6.32 -39.48 -0.25 -1.35 16 23 Cl -0.05 -0.59 28.61 -51.86 -1.48 -2.07 16 24 C 0.16 2.42 7.22 -38.93 -0.28 2.14 16 25 F -0.11 -1.87 15.76 2.25 0.04 -1.84 16 26 C 0.10 1.42 4.06 -2.97 -0.01 1.41 16 27 H 0.07 1.10 6.99 -51.93 -0.36 0.74 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.39 8.13 -51.93 -0.42 -0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.38 8.94 6.27 -40.82 -0.26 8.69 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 35 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 36 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.15 1.69 5.77 -52.48 -0.30 1.39 16 39 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.07 0.90 6.93 -51.93 -0.36 0.54 16 42 H 0.09 1.56 5.92 -51.93 -0.31 1.25 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -30.97 362.00 -8.93 -39.90 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.32 Total: 5.46 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.55 Total: -1.73 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.13 Total: -51.65 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.97 -8.93 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671780696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.368 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds