Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 110.28887 * 2 1 4 4 N 1.46503 * 109.47238 * 60.67919 * 3 2 1 5 5 C 1.36929 * 119.99870 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00372 * 0.02562 * 5 4 3 7 7 C 1.38812 * 119.99953 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46942 * 60.00459 * 9 7 5 11 11 H 1.48504 * 109.47173 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47135 * 300.00292 * 9 7 5 13 13 C 1.54612 * 110.41579 * 237.80771 * 2 1 3 14 14 C 1.54600 * 102.91210 * 262.76130 * 13 2 1 15 15 N 1.48120 * 103.42217 * 322.86423 * 14 13 2 16 16 C 1.34773 * 127.03666 * 219.28893 * 15 14 13 17 17 O 1.21566 * 119.99624 * 355.17055 * 16 15 14 18 18 C 1.47693 * 119.99908 * 175.45577 * 16 15 14 19 19 C 1.39672 * 120.16569 * 38.06705 * 18 16 15 20 20 C 1.37845 * 119.90206 * 180.02562 * 19 18 16 21 21 C 1.38454 * 120.23549 * 359.97438 * 20 19 18 22 22 C 1.38306 * 120.32340 * 0.02562 * 21 20 19 23 23 Cl 1.73590 * 119.95248 * 180.02562 * 22 21 20 24 24 C 1.38437 * 120.08789 * 359.72115 * 22 21 20 25 25 F 1.35105 * 120.10980 * 180.27834 * 24 22 21 26 26 C 1.47495 * 105.92935 * 39.02527 * 15 14 13 27 27 H 1.09003 * 109.47176 * 299.31750 * 1 2 3 28 28 H 1.09002 * 109.47462 * 59.31754 * 1 2 3 29 29 H 1.09000 * 109.47227 * 179.32007 * 1 2 3 30 30 H 1.08999 * 109.47081 * 180.67891 * 3 2 1 31 31 H 1.09003 * 109.47003 * 300.68222 * 3 2 1 32 32 H 0.96995 * 119.99583 * 0.02562 * 4 3 2 33 33 H 0.96999 * 120.00305 * 179.97438 * 8 7 5 34 34 H 1.09002 * 110.74061 * 21.25012 * 13 2 1 35 35 H 1.09002 * 110.73984 * 144.57386 * 13 2 1 36 36 H 1.08994 * 110.61619 * 204.35425 * 14 13 2 37 37 H 1.09001 * 110.54608 * 81.34595 * 14 13 2 38 38 H 1.08003 * 120.04633 * 359.97438 * 19 18 16 39 39 H 1.08004 * 119.88493 * 179.97438 * 20 19 18 40 40 H 1.07994 * 119.84143 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.90873 * 94.14083 * 26 15 14 42 42 H 1.08997 * 109.91079 * 215.22840 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 7 1.5954 2.1277 1.2043 5 6 1.9469 3.4331 1.4221 6 1 2.5666 3.9523 0.7060 7 6 1.5067 4.0892 2.5634 8 7 0.7518 3.4565 3.4365 9 14 1.9868 5.8698 2.8610 10 1 1.4822 6.7114 1.7464 11 1 1.3940 6.3351 4.1407 12 1 3.4660 5.9783 2.9329 13 6 2.0693 -0.7720 -1.2262 14 6 2.3677 -2.1742 -0.6478 15 7 2.8825 -1.8835 0.7103 16 6 3.8948 -2.5067 1.3454 17 8 4.4317 -3.4701 0.8340 18 6 4.3475 -2.0231 2.6654 19 6 3.4184 -1.5589 3.5993 20 6 3.8471 -1.1082 4.8295 21 6 5.1956 -1.1146 5.1432 22 6 6.1238 -1.5722 4.2257 23 17 7.8121 -1.5765 4.6293 24 6 5.7077 -2.0327 2.9882 25 9 6.6135 -2.4851 2.0937 26 6 2.0649 -0.7680 1.2229 27 1 -0.3634 0.5032 0.8961 28 1 -0.3634 0.5244 -0.8838 29 1 -0.3634 -1.0276 -0.0122 30 1 3.1503 1.4196 -0.0122 31 1 1.6946 1.9578 -0.8838 32 1 1.0385 1.6616 1.8472 33 1 0.4445 3.9148 4.2342 34 1 1.3135 -0.8286 -2.0097 35 1 2.9824 -0.3103 -1.6020 36 1 3.1244 -2.6827 -1.2451 37 1 1.4553 -2.7681 -0.5942 38 1 2.3658 -1.5522 3.3576 39 1 3.1284 -0.7489 5.5513 40 1 5.5243 -0.7605 6.1090 41 1 1.2331 -1.1569 1.8102 42 1 2.6785 -0.1104 1.8386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671780696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -58.589517 kcal Electronic energy + Delta-G solvation = -27868.424486 eV Core-core repulsion = 23788.504266 eV Total energy + Delta-G solvation = -4079.920220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.20017 -41.66230 -40.01664 -39.13471 -37.66252 -36.41363 -34.38777 -32.98604 -31.91731 -31.64459 -30.28013 -27.69468 -27.32842 -25.81034 -24.61185 -24.00380 -23.11570 -21.03710 -20.27166 -19.16456 -18.84864 -18.40384 -17.93222 -17.33513 -16.86954 -16.84715 -16.60995 -16.15892 -15.76310 -15.62999 -15.19942 -15.12739 -14.87064 -14.54782 -14.39173 -14.15126 -13.94399 -13.64161 -13.43551 -13.18848 -13.08207 -12.87330 -12.81745 -12.70873 -12.64263 -12.59388 -12.23607 -12.16227 -11.96476 -11.81885 -11.43847 -11.36962 -11.17485 -10.88104 -10.24331 -9.93301 -9.79728 -8.91537 -7.89301 -5.15509 -0.49298 -0.21572 0.76433 1.43656 1.51627 1.51844 1.57726 1.76534 2.33108 2.59865 2.80671 3.10050 3.42810 3.49639 3.57101 3.70251 3.77929 3.80833 4.01025 4.18419 4.23301 4.30094 4.37656 4.42486 4.62042 4.65696 4.66887 4.77015 4.78593 4.83125 4.90872 4.99349 5.06183 5.08386 5.09097 5.18423 5.30478 5.34839 5.46066 5.54953 5.57842 6.27965 6.33726 6.84577 7.42262 8.15164 8.42752 9.33081 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.004518 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.057758 B = 6196.502835 C = 8499.047274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C 0.167 3.833 4 N -0.734 5.734 5 C -0.245 4.245 6 H 0.065 0.935 7 C -0.060 4.060 8 N -0.958 5.958 9 Si 0.959 3.041 10 H -0.283 1.283 11 H -0.293 1.293 12 H -0.285 1.285 13 C -0.114 4.114 14 C 0.105 3.895 15 N -0.607 5.607 16 C 0.576 3.424 17 O -0.569 6.569 18 C -0.171 4.171 19 C -0.052 4.052 20 C -0.109 4.109 21 C -0.051 4.051 22 C -0.089 4.089 23 Cl -0.043 7.043 24 C 0.131 3.869 25 F -0.129 7.129 26 C 0.105 3.895 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.005 0.995 31 H 0.024 0.976 32 H 0.381 0.619 33 H 0.252 0.748 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.178 0.822 40 H 0.179 0.821 41 H 0.091 0.909 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -12.260 0.296 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C 0.040 3.960 4 N -0.378 5.378 5 C -0.377 4.377 6 H 0.083 0.917 7 C -0.253 4.253 8 N -0.608 5.608 9 Si 0.789 3.211 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.211 1.211 13 C -0.153 4.153 14 C -0.016 4.016 15 N -0.339 5.339 16 C 0.366 3.634 17 O -0.450 6.450 18 C -0.175 4.175 19 C -0.070 4.070 20 C -0.126 4.126 21 C -0.070 4.070 22 C -0.117 4.117 23 Cl -0.014 7.014 24 C 0.110 3.890 25 F -0.108 7.108 26 C -0.017 4.017 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.214 0.786 33 H 0.061 0.939 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.176 0.824 39 H 0.195 0.805 40 H 0.196 0.804 41 H 0.109 0.891 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.441 -12.672 0.017 13.131 hybrid contribution 0.684 1.000 0.263 1.240 sum 4.125 -11.672 0.280 12.383 Atomic orbital electron populations 1.21751 0.91795 1.02408 1.02353 1.21579 0.97350 0.93798 0.94638 1.20801 0.95113 0.90678 0.89438 1.42441 1.61507 1.10539 1.23318 1.19457 1.24954 0.89649 1.03667 0.91665 1.25285 1.01122 1.01357 0.97534 1.69733 1.40937 1.37426 1.12695 0.85446 0.77521 0.81436 0.76725 1.20937 1.21935 1.21145 1.22745 1.02302 0.93324 0.96908 1.22628 0.99898 0.97875 0.81221 1.48744 1.32049 1.34536 1.18569 1.17723 0.78843 0.82325 0.84524 1.90779 1.57557 1.28159 1.68462 1.19904 0.92405 1.08221 0.96995 1.21762 1.00342 0.92449 0.92484 1.21593 0.95929 0.98122 0.97005 1.21593 0.91707 0.94185 0.99466 1.21002 0.88128 1.08012 0.94542 1.98383 1.12476 1.97275 1.93280 1.17567 0.85839 0.98490 0.87121 1.91534 1.66065 1.86253 1.66915 1.22583 0.94617 0.87260 0.97219 0.93536 0.91817 0.90320 0.97693 0.95774 0.78556 0.93926 0.86711 0.91480 0.90373 0.88283 0.82375 0.80499 0.80385 0.89135 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.04 71.98 0.58 -2.43 16 2 C -0.07 -1.93 0.68 -51.29 -0.03 -1.96 16 3 C 0.17 6.03 4.90 86.38 0.42 6.45 16 4 N -0.73 -33.27 4.88 -343.44 -1.68 -34.95 16 5 C -0.25 -12.83 9.99 84.03 0.84 -11.99 16 6 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 7 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 8 N -0.96 -53.28 13.06 21.65 0.28 -53.00 16 9 Si 0.96 43.86 29.55 68.60 2.03 45.89 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C -0.11 -2.43 6.16 31.69 0.20 -2.24 16 14 C 0.10 2.34 7.05 86.61 0.61 2.95 16 15 N -0.61 -16.88 3.29 -813.64 -2.68 -19.56 16 16 C 0.58 19.00 7.42 86.74 0.64 19.64 16 17 O -0.57 -22.21 16.44 -3.92 -0.06 -22.28 16 18 C -0.17 -5.16 5.51 -20.06 -0.11 -5.27 16 19 C -0.05 -1.27 7.96 22.52 0.18 -1.09 16 20 C -0.11 -2.21 10.03 22.23 0.22 -1.98 16 21 C -0.05 -1.04 9.82 22.34 0.22 -0.82 16 22 C -0.09 -2.30 6.32 22.33 0.14 -2.16 16 23 Cl -0.04 -1.03 28.61 -2.72 -0.08 -1.11 16 24 C 0.13 4.07 7.22 22.69 0.16 4.24 16 25 F -0.13 -4.55 15.76 44.97 0.71 -3.84 16 26 C 0.11 2.85 4.06 86.53 0.35 3.20 16 27 H 0.05 1.36 6.99 -2.39 -0.02 1.34 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.01 0.20 8.13 -2.39 -0.02 0.18 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.38 17.64 6.27 -92.71 -0.58 17.06 16 33 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 34 H 0.11 1.81 7.86 -2.39 -0.02 1.79 16 35 H 0.07 1.57 7.86 -2.39 -0.02 1.56 16 36 H 0.08 1.86 7.89 -2.39 -0.02 1.84 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.16 3.41 5.77 -2.91 -0.02 3.40 16 39 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.09 2.11 6.93 -2.39 -0.02 2.09 16 42 H 0.07 2.30 5.92 -2.39 -0.01 2.29 16 Total: -1.00 -67.41 362.00 3.89 -63.52 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.48 Total: 21.50 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.89 Total: 3.83 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -4.07 Total: -107.51 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.71 Total: -3.84 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -67.41 3.89 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671780696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.926 kcal (2) G-P(sol) polarization free energy of solvation -67.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds