Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48508 * 109.47093 * 270.00139 * 3 2 1 5 5 H 1.48503 * 109.46936 * 29.99595 * 3 2 1 6 6 H 1.48493 * 109.47570 * 149.99737 * 3 2 1 7 7 C 1.38797 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99799 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00597 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00276 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47048 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99757 * 0.02562 * 11 10 9 13 13 N 1.34767 * 119.99735 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99918 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84838 * 333.05804 * 14 13 11 16 16 C 1.53780 * 113.61278 * 104.36549 * 14 13 11 17 17 C 1.53777 * 87.08230 * 89.11930 * 16 14 13 18 18 H 1.09000 * 113.69201 * 139.99530 * 17 16 14 19 19 N 1.46499 * 113.61137 * 270.88071 * 17 16 14 20 20 C 1.34778 * 119.99939 * 182.67097 * 19 17 16 21 21 O 1.21274 * 119.99881 * 0.02562 * 20 19 17 22 22 C 1.50702 * 119.99684 * 179.97438 * 20 19 17 23 23 N 1.46502 * 109.46721 * 180.02562 * 22 20 19 24 24 C 1.34593 * 126.43959 * 125.00329 * 23 22 20 25 25 N 1.31066 * 106.68385 * 179.97438 * 24 23 22 26 26 N 1.28844 * 107.98891 * 359.97438 * 25 24 23 27 27 N 1.28737 * 109.39820 * 359.73889 * 26 25 24 28 28 C 1.53779 * 87.08407 * 25.43061 * 17 16 14 29 29 H 0.97002 * 119.99955 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47181 * 300.00462 * 10 9 7 31 31 H 1.08999 * 109.47030 * 60.00591 * 10 9 7 32 32 H 0.97001 * 120.00477 * 0.02562 * 13 11 10 33 33 H 1.09009 * 113.61105 * 203.66980 * 16 14 13 34 34 H 1.08996 * 113.61381 * 334.56630 * 16 14 13 35 35 H 0.97002 * 120.00328 * 2.67483 * 19 17 16 36 36 H 1.08999 * 109.47675 * 300.00325 * 22 20 19 37 37 H 1.09004 * 109.47151 * 60.00435 * 22 20 19 38 38 H 1.08005 * 126.65751 * 0.03465 * 24 23 22 39 39 H 1.08996 * 113.61746 * 220.02206 * 28 17 16 40 40 H 1.09000 * 113.68989 * 89.12821 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3439 -2.2964 0.0014 13 7 6.0456 -4.4947 0.0011 14 6 7.4907 -4.7358 0.0016 15 1 8.0556 -3.9223 -0.4535 16 6 8.0403 -5.1818 1.3668 17 6 7.7459 -6.6252 0.9256 18 1 8.5170 -7.3383 1.2172 19 7 6.3946 -7.0784 1.2647 20 6 6.0177 -8.3419 0.9855 21 8 6.7973 -9.1038 0.4540 22 6 4.6279 -8.8082 1.3349 23 7 4.4671 -10.2079 0.9334 24 6 4.0841 -11.2275 1.7242 25 7 4.0691 -12.3013 0.9728 26 7 4.4238 -11.9590 -0.2176 27 7 4.6595 -10.6937 -0.2463 28 6 7.8832 -6.1272 -0.5228 29 1 -0.4850 0.8401 -0.0004 30 1 3.6432 -3.4318 0.8906 31 1 3.6440 -3.4314 -0.8894 32 1 5.4290 -5.2435 0.0011 33 1 9.1021 -4.9736 1.4992 34 1 7.4347 -4.8510 2.2105 35 1 5.7712 -6.4691 1.6901 36 1 4.4743 -8.7191 2.4103 37 1 3.8959 -8.1933 0.8112 38 1 3.8362 -11.1715 2.7739 39 1 7.1508 -6.5595 -1.2045 40 1 8.9015 -6.1771 -0.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688039181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = 84.183094 kcal Electronic energy + Delta-G solvation = -26213.804366 eV Core-core repulsion = 22194.331650 eV Total energy + Delta-G solvation = -4019.472716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.53021 -41.19275 -39.68779 -38.23697 -35.85166 -34.30226 -33.10691 -32.76105 -32.53515 -29.89352 -29.28556 -26.25763 -25.74235 -25.05839 -24.20739 -23.63924 -21.74826 -20.60725 -20.19525 -18.40783 -18.29934 -17.97924 -17.14332 -16.71429 -16.51620 -16.29257 -16.14005 -15.82235 -15.48865 -15.06565 -14.94883 -14.52473 -14.04337 -13.88284 -13.55430 -13.17070 -13.08703 -12.88559 -12.78799 -12.50174 -12.34591 -12.22598 -11.61246 -11.49244 -11.40854 -11.36324 -11.09322 -10.93276 -10.79874 -10.68430 -10.45654 -9.95933 -9.77900 -9.67001 -9.21240 -9.09163 -8.62281 -7.03685 -6.38495 -4.11468 0.83513 1.33040 1.76648 1.94156 2.32741 2.60442 2.74450 3.14478 3.26005 3.41923 3.49722 3.56420 3.77644 3.82227 3.93476 4.10558 4.14798 4.23915 4.36220 4.41752 4.59979 4.67746 5.00743 5.01252 5.08372 5.16242 5.24630 5.27917 5.33731 5.48444 5.54454 5.57625 5.60901 5.63840 5.82056 5.87651 6.39079 6.66682 7.36669 7.39725 7.84221 8.26074 8.27982 8.30922 9.07524 10.70616 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002436 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.682502 B =11490.123135 C =13246.385698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.088 0.912 9 S -0.138 6.138 10 C -0.126 4.126 11 C 0.532 3.468 12 O -0.512 6.512 13 N -0.722 5.722 14 C 0.122 3.878 15 H 0.106 0.894 16 C -0.153 4.153 17 C 0.122 3.878 18 H 0.098 0.902 19 N -0.709 5.709 20 C 0.504 3.496 21 O -0.503 6.503 22 C 0.093 3.907 23 N -0.302 5.302 24 C 0.161 3.839 25 N -0.306 5.306 26 N -0.077 5.077 27 N -0.062 5.062 28 C -0.154 4.154 29 H 0.272 0.728 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.395 0.605 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.405 0.595 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.236 0.764 39 H 0.079 0.921 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.488 -17.145 7.791 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.277 4.277 11 C 0.318 3.682 12 O -0.385 6.385 13 N -0.377 5.377 14 C 0.016 3.984 15 H 0.124 0.876 16 C -0.192 4.192 17 C 0.018 3.982 18 H 0.116 0.884 19 N -0.363 5.363 20 C 0.287 3.713 21 O -0.375 6.375 22 C -0.033 4.033 23 N -0.104 5.104 24 C -0.138 4.138 25 N -0.153 5.153 26 N -0.071 5.071 27 N -0.049 5.049 28 C -0.193 4.193 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.229 0.771 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.252 0.748 39 H 0.098 0.902 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.331 -16.755 6.183 22.899 hybrid contribution -1.590 0.327 1.127 1.977 sum 12.741 -16.428 7.310 22.038 Atomic orbital electron populations 1.69929 1.05929 1.27887 1.47769 1.24713 0.94456 0.99005 0.93104 0.86741 0.81841 0.83286 0.80010 1.19159 1.19877 1.15943 1.22287 0.88172 0.97517 1.59141 0.89397 1.84853 1.09387 0.99569 1.97421 1.23292 0.93754 1.04877 1.05746 1.20346 0.90643 0.82207 0.74959 1.90716 1.58713 1.42053 1.47045 1.45782 1.06383 1.07943 1.77542 1.21861 0.82277 0.98134 0.96142 0.87555 1.23766 1.03245 0.93278 0.98954 1.21972 0.83485 0.96340 0.96448 0.88448 1.45701 1.15639 1.12182 1.62778 1.20159 0.88667 0.82705 0.79802 1.90874 1.52837 1.53675 1.40144 1.22029 0.98436 0.77778 1.05087 1.48131 1.44309 1.10518 1.07429 1.27770 1.01394 0.82829 1.01765 1.75012 1.17892 1.23845 0.98573 1.78704 1.13208 1.02481 1.12714 1.79042 1.15981 1.06522 1.03333 1.23735 1.03681 0.95193 0.96728 0.91843 0.88504 0.88462 0.77081 0.87328 0.90029 0.75841 0.83576 0.84200 0.74779 0.90233 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.97 55.49 0.78 -24.78 16 2 C 0.10 2.70 5.50 -17.43 -0.10 2.60 16 3 Si 0.86 20.89 27.74 -169.99 -4.72 16.18 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 7 C -0.52 -14.25 10.04 30.94 0.31 -13.94 16 8 H 0.09 2.48 8.03 -52.48 -0.42 2.06 16 9 S -0.14 -3.26 18.55 -107.50 -1.99 -5.25 16 10 C -0.13 -2.11 6.16 36.01 0.22 -1.89 16 11 C 0.53 7.96 7.85 -10.99 -0.09 7.87 16 12 O -0.51 -9.78 15.50 5.56 0.09 -9.70 16 13 N -0.72 -6.95 4.96 -53.01 -0.26 -7.21 16 14 C 0.12 1.03 4.28 -67.11 -0.29 0.74 16 15 H 0.11 1.11 7.54 -51.93 -0.39 0.72 16 16 C -0.15 -0.92 7.57 -25.92 -0.20 -1.12 16 17 C 0.12 0.71 4.00 -67.12 -0.27 0.44 16 18 H 0.10 0.63 8.04 -51.93 -0.42 0.21 16 19 N -0.71 -3.10 4.34 -53.02 -0.23 -3.33 16 20 C 0.50 3.10 7.85 -10.98 -0.09 3.01 16 21 O -0.50 -5.69 15.65 5.56 0.09 -5.60 16 22 C 0.09 0.26 6.96 -5.19 -0.04 0.22 16 23 N -0.30 -2.21 3.19 -63.73 -0.20 -2.41 16 24 C 0.16 1.02 12.79 -90.40 -1.16 -0.14 16 25 N -0.31 -3.39 12.36 29.59 0.37 -3.03 16 26 N -0.08 -1.03 13.43 60.35 0.81 -0.22 16 27 N -0.06 -0.75 12.31 60.35 0.74 0.00 16 28 C -0.15 -1.06 7.62 -25.92 -0.20 -1.26 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 31 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 32 H 0.39 2.74 7.19 -40.82 -0.29 2.44 16 33 H 0.11 0.54 8.14 -51.92 -0.42 0.11 16 34 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 35 H 0.41 0.91 7.82 -40.82 -0.32 0.59 16 36 H 0.15 -0.29 8.08 -51.93 -0.42 -0.71 16 37 H 0.14 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.24 0.07 8.06 -52.48 -0.42 -0.35 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -40.63 363.61 -5.74 -46.37 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.80 Total: -3.02 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.88 Total: -3.45 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 2.00 Total: -40.99 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.17 Total: -15.30 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.72 Total: 16.18 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.99 Total: -5.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -40.63 -5.74 -46.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688039181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.551 kcal (2) G-P(sol) polarization free energy of solvation -40.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds