Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48506 * 109.47040 * 269.99525 * 3 2 1 5 5 H 1.48496 * 109.47466 * 29.99591 * 3 2 1 6 6 H 1.48498 * 109.47133 * 150.00203 * 3 2 1 7 7 C 1.38797 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99984 * 175.46218 * 13 11 10 15 15 C 1.52999 * 115.54616 * 294.47958 * 14 13 11 16 16 N 1.46497 * 109.47461 * 324.38868 * 15 14 13 17 17 C 1.34774 * 120.00202 * 174.51904 * 16 15 14 18 18 O 1.21287 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.46505 * 109.47249 * 180.02562 * 19 17 16 21 21 N 1.28883 * 125.45151 * 89.99807 * 20 19 17 22 22 C 1.31040 * 107.91153 * 180.02562 * 21 20 19 23 23 N 1.33318 * 106.90757 * 0.02562 * 22 21 20 24 24 N 1.28790 * 125.44201 * 269.69320 * 20 19 17 25 25 C 1.52993 * 117.49990 * 148.80951 * 14 13 11 26 26 C 1.52999 * 117.49914 * 80.14739 * 14 13 11 27 27 H 0.96995 * 120.00197 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47401 * 60.00125 * 10 9 7 29 29 H 1.08999 * 109.47705 * 299.99752 * 10 9 7 30 30 H 0.97001 * 120.00110 * 355.18850 * 13 11 10 31 31 H 1.09005 * 109.46957 * 84.39267 * 15 14 13 32 32 H 1.08997 * 109.47016 * 204.38643 * 15 14 13 33 33 H 0.97002 * 120.00165 * 354.52474 * 16 15 14 34 34 H 1.09003 * 109.47601 * 300.00164 * 19 17 16 35 35 H 1.09002 * 109.47102 * 60.00570 * 19 17 16 36 36 H 1.08007 * 126.54594 * 180.02562 * 22 21 20 37 37 H 1.09005 * 117.49674 * 359.97438 * 25 14 13 38 38 H 1.09001 * 117.50250 * 145.01693 * 25 14 13 39 39 H 1.08994 * 117.50200 * 214.97932 * 26 14 13 40 40 H 1.09002 * 117.49893 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3338 -7.7126 0.1018 15 6 1.6465 -8.0647 1.4225 16 7 2.3248 -7.3779 2.5245 17 6 1.8247 -7.4510 3.7738 18 8 0.8133 -8.0859 3.9860 19 6 2.5229 -6.7450 4.9074 20 7 1.7882 -6.9769 6.1535 21 7 1.9896 -7.9541 6.9693 22 6 1.1458 -7.8291 7.9641 23 7 0.4208 -6.7366 7.7226 24 7 0.8414 -6.2336 6.6117 25 6 3.1299 -8.8166 -0.5967 26 6 1.7878 -8.3588 -1.1731 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.7988 -6.1853 -0.0704 31 1 0.6037 -7.7494 1.3848 32 1 1.6947 -9.1420 1.5812 33 1 3.1339 -6.8704 2.3549 34 1 3.5371 -7.1318 5.0068 35 1 2.5604 -5.6754 4.7011 36 1 1.0551 -8.4857 8.8169 37 1 4.0334 -8.5240 -1.1318 38 1 3.1638 -9.7941 -0.1155 39 1 0.9392 -9.0352 -1.0708 40 1 1.8080 -7.7648 -2.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689585764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = 64.814760 kcal Electronic energy + Delta-G solvation = -26461.192603 eV Core-core repulsion = 22440.880013 eV Total energy + Delta-G solvation = -4020.312590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.37630 -41.42119 -40.56517 -38.48710 -36.05765 -35.52980 -34.57329 -34.12788 -34.06124 -30.93178 -30.45375 -27.89013 -27.62959 -25.00094 -24.29668 -23.62280 -22.65894 -21.95833 -20.87547 -19.83477 -19.33247 -19.01023 -17.82004 -17.74146 -17.47336 -16.95154 -16.86636 -16.65271 -16.31871 -16.19890 -15.76897 -15.39881 -15.04308 -14.86622 -14.78336 -14.53294 -14.45133 -13.68333 -13.62796 -13.44517 -13.14607 -12.97070 -12.89140 -12.59742 -12.40832 -12.31850 -12.07462 -11.98916 -11.75703 -11.72635 -11.41477 -11.13379 -11.10774 -10.85406 -10.31208 -10.22758 -10.08660 -8.64662 -8.33524 -6.10995 0.06570 0.78262 1.22377 1.25239 1.27109 1.42781 1.47521 1.56370 1.62845 1.89358 2.18214 2.28916 2.72065 3.01269 3.14057 3.31222 3.32963 3.47640 3.50258 3.84188 3.85459 3.86975 3.99479 4.04401 4.34613 4.45599 4.53183 4.56943 4.68165 4.71966 4.77004 4.77436 5.00775 5.03002 5.11209 5.20804 5.43173 5.53059 6.20613 6.20780 6.52535 6.89937 7.08417 7.28663 7.30180 8.75332 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.003285 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.842341 B = 8520.599924 C =11235.984283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.553 6.553 13 N -0.682 5.682 14 C 0.069 3.931 15 C 0.159 3.841 16 N -0.694 5.694 17 C 0.503 3.497 18 O -0.577 6.577 19 C 0.104 3.896 20 N -0.124 5.124 21 N -0.310 5.310 22 C 0.148 3.852 23 N -0.315 5.315 24 N -0.080 5.080 25 C -0.119 4.119 26 C -0.182 4.182 27 H 0.269 0.731 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.423 0.577 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.420 0.580 34 H 0.196 0.804 35 H 0.171 0.829 36 H 0.278 0.722 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.203 -20.235 5.693 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.429 6.429 13 N -0.338 5.338 14 C -0.019 4.019 15 C 0.034 3.966 16 N -0.347 5.347 17 C 0.287 3.713 18 O -0.456 6.456 19 C -0.019 4.019 20 N -0.036 5.036 21 N -0.160 5.160 22 C -0.155 4.155 23 N -0.185 5.185 24 N -0.074 5.074 25 C -0.156 4.156 26 C -0.220 4.220 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.263 0.737 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.258 0.742 34 H 0.213 0.787 35 H 0.189 0.811 36 H 0.294 0.706 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.120 0.880 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.261 -20.401 5.433 25.478 hybrid contribution 1.657 1.327 -0.013 2.123 sum 15.918 -19.074 5.420 25.428 Atomic orbital electron populations 1.70192 1.08066 1.28496 1.48219 1.26116 0.95872 1.03369 0.93906 0.84987 0.78340 0.76181 0.78700 1.19467 1.20773 1.17790 1.23199 0.95371 0.91899 1.58486 0.89589 1.85754 1.10754 0.99434 1.97052 1.23377 1.03419 0.94049 1.07158 1.20114 0.86272 0.86423 0.74852 1.90741 1.17640 1.85836 1.48680 1.45071 1.10369 1.02745 1.75625 1.20733 1.05948 0.82343 0.92863 1.20985 0.95357 0.97280 0.82973 1.45447 1.30145 1.53262 1.05849 1.20704 0.84639 0.80962 0.84950 1.90808 1.26447 1.44009 1.84376 1.22462 0.97370 1.06778 0.75241 1.49795 1.22585 1.13698 1.17540 1.74647 1.26328 1.11918 1.03139 1.28238 0.90427 0.96718 1.00070 1.75872 1.23549 1.11252 1.07865 1.79070 1.02368 1.19377 1.06564 1.23600 0.95354 0.96855 0.99789 1.23375 0.99392 1.03158 0.96116 0.92166 0.86429 0.87206 0.73740 0.94191 0.88719 0.74161 0.78668 0.81135 0.70626 0.85613 0.85299 0.87972 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.66 13.22 21.65 0.29 -55.38 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 42.51 29.55 68.60 2.03 44.54 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.54 -29.57 9.50 67.95 0.65 -28.93 16 8 H 0.09 4.28 7.80 -2.91 -0.02 4.25 16 9 S -0.16 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -4.39 6.16 71.24 0.44 -3.95 16 11 C 0.54 16.60 7.70 87.66 0.68 17.27 16 12 O -0.55 -23.43 15.38 -3.02 -0.05 -23.48 16 13 N -0.68 -11.91 4.44 -422.92 -1.88 -13.79 16 14 C 0.07 1.13 1.97 3.60 0.01 1.13 16 15 C 0.16 3.27 5.43 86.38 0.47 3.74 16 16 N -0.69 -11.83 5.40 -463.07 -2.50 -14.33 16 17 C 0.50 11.24 7.90 87.65 0.69 11.93 16 18 O -0.58 -19.56 16.42 -3.05 -0.05 -19.61 16 19 C 0.10 1.55 7.08 85.63 0.61 2.15 16 20 N -0.12 -2.96 3.49 -190.99 -0.67 -3.63 16 21 N -0.31 -6.96 12.13 -61.09 -0.74 -7.70 16 22 C 0.15 3.06 13.26 180.68 2.40 5.45 16 23 N -0.31 -9.00 12.50 -61.11 -0.76 -9.76 16 24 N -0.08 -2.44 13.25 37.02 0.49 -1.95 16 25 C -0.12 -0.95 10.11 30.62 0.31 -0.65 16 26 C -0.18 -3.02 10.18 30.62 0.31 -2.71 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.11 3.33 8.14 -2.40 -0.02 3.31 16 30 H 0.42 3.80 8.83 -92.71 -0.82 2.98 16 31 H 0.04 1.24 7.90 -2.38 -0.02 1.22 16 32 H 0.09 1.62 7.91 -2.39 -0.02 1.60 16 33 H 0.42 4.15 7.78 -92.71 -0.72 3.43 16 34 H 0.20 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.28 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.13 0.58 8.06 -2.39 -0.02 0.56 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -96.08 374.12 1.58 -94.50 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.43 Total: 13.47 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 7.02 Total: 6.58 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -5.77 Total: -106.53 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.10 Total: -43.09 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -96.08 1.58 -94.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689585764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.310 kcal (2) G-P(sol) polarization free energy of solvation -96.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds