Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47229 * 270.00690 * 3 2 1 5 5 H 1.48501 * 109.46816 * 30.00191 * 3 2 1 6 6 H 1.48498 * 109.47353 * 149.99949 * 3 2 1 7 7 C 1.38814 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00155 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00065 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47014 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.52869 * 304.92483 * 11 10 9 13 13 C 1.53351 * 109.68366 * 184.75112 * 11 10 9 14 14 C 1.53040 * 109.60927 * 178.75204 * 13 11 10 15 15 C 1.53191 * 109.31108 * 61.37452 * 14 13 11 16 16 N 1.46918 * 108.77611 * 305.36489 * 15 14 13 17 17 C 1.34779 * 120.63130 * 233.63078 * 16 15 14 18 18 O 1.21554 * 119.99935 * 174.37262 * 17 16 15 19 19 C 1.47854 * 119.99994 * 354.36717 * 17 16 15 20 20 C 1.39564 * 120.12543 * 324.45635 * 19 17 16 21 21 C 1.38180 * 119.84861 * 179.69476 * 20 19 17 22 22 F 1.35108 * 119.94620 * 180.29887 * 21 20 19 23 23 C 1.38571 * 120.10852 * 0.60274 * 21 20 19 24 24 C 1.38407 * 120.25413 * 359.66862 * 23 21 20 25 25 Cl 1.73604 * 119.92540 * 180.02562 * 24 23 21 26 26 C 1.38108 * 120.14615 * 0.03086 * 24 23 21 27 27 C 1.46923 * 118.74018 * 53.61337 * 16 15 14 28 28 H 0.96996 * 120.00173 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00078 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46680 * 60.00707 * 10 9 7 31 31 H 1.09000 * 109.47338 * 300.00405 * 10 9 7 32 32 H 1.09001 * 109.41398 * 58.71517 * 13 11 10 33 33 H 1.09001 * 109.42229 * 298.79399 * 13 11 10 34 34 H 1.09002 * 109.49408 * 301.42675 * 14 13 11 35 35 H 1.09002 * 109.52482 * 181.34610 * 14 13 11 36 36 H 1.09007 * 109.58443 * 185.57789 * 15 14 13 37 37 H 1.08997 * 109.70251 * 65.22936 * 15 14 13 38 38 H 1.07996 * 120.07430 * 359.97438 * 20 19 17 39 39 H 1.07999 * 119.87407 * 179.69599 * 23 21 20 40 40 H 1.08005 * 120.05406 * 180.02562 * 26 24 23 41 41 H 1.08996 * 109.58892 * 66.17164 * 27 16 15 42 42 H 1.09004 * 109.59161 * 186.45959 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3804 -4.7142 0.8426 13 6 1.8220 -6.1473 0.1197 14 6 0.8243 -7.3074 0.1515 15 6 0.0252 -7.3242 -1.1553 16 7 -0.5901 -6.0044 -1.3504 17 6 -1.9160 -5.8895 -1.5634 18 8 -2.4291 -4.7891 -1.6213 19 6 -2.7463 -7.1020 -1.7267 20 6 -2.2297 -8.2219 -2.3799 21 6 -3.0085 -9.3542 -2.5238 22 9 -2.5083 -10.4417 -3.1505 23 6 -4.3038 -9.3741 -2.0320 24 6 -4.8225 -8.2639 -1.3884 25 17 -6.4462 -8.2984 -0.7749 26 6 -4.0512 -7.1288 -1.2333 27 6 0.2674 -4.8121 -1.3085 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6847 -3.7145 0.8896 31 1 2.6849 -3.7145 -0.8905 32 1 2.4090 -6.1479 1.0382 33 1 2.4868 -6.2635 -0.7362 34 1 0.1433 -7.1785 0.9928 35 1 1.3633 -8.2485 0.2605 36 1 -0.7531 -8.0853 -1.0979 37 1 0.6905 -7.5443 -1.9901 38 1 -1.2220 -8.2052 -2.7681 39 1 -4.9109 -10.2594 -2.1508 40 1 -4.4573 -6.2635 -0.7305 41 1 0.9544 -4.8261 -2.1545 42 1 -0.3508 -3.9155 -1.3547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690424821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -43.808432 kcal Electronic energy + Delta-G solvation = -26933.137300 eV Core-core repulsion = 22853.858036 eV Total energy + Delta-G solvation = -4079.279264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.42382 -40.84113 -39.00035 -37.58269 -36.87492 -35.03248 -33.14710 -31.86822 -31.54094 -30.97875 -29.66257 -26.18700 -25.63153 -23.80922 -23.44386 -22.95077 -21.46718 -20.51705 -19.57376 -18.02790 -17.42354 -17.01019 -16.87897 -16.40474 -16.14528 -15.87004 -15.29209 -14.97641 -14.77785 -14.64997 -14.13847 -13.93381 -13.67163 -13.62065 -13.49946 -13.05560 -12.94377 -12.63363 -12.53345 -12.45555 -12.12282 -11.86369 -11.52302 -11.37609 -11.13729 -11.02528 -10.83847 -10.69741 -10.42785 -10.33197 -10.05344 -9.90996 -9.61572 -9.45746 -9.20281 -8.85455 -8.62026 -6.88719 -5.70942 -3.00951 0.20480 0.47182 1.50808 2.40750 2.81411 3.12450 3.46591 3.51159 3.53412 3.65842 4.02747 4.27052 4.44786 4.49409 4.59671 4.68507 4.73350 4.82311 4.94672 5.14410 5.17580 5.24504 5.33277 5.36897 5.50889 5.58348 5.62021 5.62890 5.74205 5.80035 5.90272 6.05294 6.08606 6.09530 6.17480 6.35384 6.49238 6.55228 6.75068 6.85879 7.31684 7.73513 8.05451 8.46664 9.57754 10.15273 10.49449 11.51284 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.002620 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.068515 B =10683.069118 C =11956.640946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.113 4.113 14 C -0.134 4.134 15 C 0.090 3.910 16 N -0.601 5.601 17 C 0.554 3.446 18 O -0.512 6.512 19 C -0.079 4.079 20 C -0.125 4.125 21 C 0.108 3.892 22 F -0.128 7.128 23 C -0.129 4.129 24 C -0.014 4.014 25 Cl -0.047 7.047 26 C -0.066 4.066 27 C 0.120 3.880 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.070 0.930 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 -25.644 -3.478 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.172 4.172 15 C -0.032 4.032 16 N -0.334 5.334 17 C 0.340 3.660 18 O -0.387 6.387 19 C -0.083 4.083 20 C -0.144 4.144 21 C 0.088 3.912 22 F -0.107 7.107 23 C -0.149 4.149 24 C -0.041 4.041 25 Cl -0.018 7.018 26 C -0.086 4.086 27 C -0.002 4.002 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.171 0.829 41 H 0.088 0.912 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.838 -24.946 -3.476 26.099 hybrid contribution 0.151 0.628 -0.060 0.648 sum -6.688 -24.318 -3.537 25.468 Atomic orbital electron populations 1.69668 1.05053 1.25664 1.57332 1.24759 0.95495 0.97677 1.02952 0.86210 0.78609 0.83977 0.77489 1.21735 1.21791 1.20821 1.19193 0.90960 0.84159 1.43081 0.91235 1.42416 1.05953 0.99935 1.89511 1.20620 0.92925 0.85118 0.98052 1.21750 0.98004 0.95164 0.97754 0.90665 1.21585 0.97455 0.93635 1.02443 1.21919 0.98626 0.99309 0.97317 1.22262 0.97774 0.84784 0.98423 1.48062 1.06553 1.08468 1.70321 1.18052 0.81912 0.88162 0.77838 1.90907 1.71726 1.26661 1.49408 1.19766 0.94513 0.94169 0.99852 1.21636 1.01260 0.91375 1.00165 1.17220 0.92225 0.84380 0.97380 1.91561 1.87310 1.52058 1.79751 1.21131 0.94716 0.99484 0.99522 1.20468 0.88078 0.95032 1.00481 1.98411 1.19019 1.98575 1.85831 1.21230 0.91846 0.97549 0.97942 1.21820 0.93197 0.87612 0.97524 0.93461 0.78068 0.96017 0.96225 0.91394 0.91680 0.91374 0.90700 0.89166 0.90894 0.82763 0.83172 0.82901 0.91203 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.71 5.38 -59.91 -0.32 -19.04 16 10 C 0.16 3.16 5.67 -4.04 -0.02 3.14 16 11 C -0.11 -1.68 2.39 -90.33 -0.22 -1.89 16 12 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.11 -1.29 5.19 -26.53 -0.14 -1.43 16 14 C -0.13 -1.23 6.08 -26.61 -0.16 -1.39 16 15 C 0.09 0.83 4.78 -3.72 -0.02 0.81 16 16 N -0.60 -7.93 2.97 -173.88 -0.52 -8.45 16 17 C 0.55 8.14 7.38 -12.32 -0.09 8.05 16 18 O -0.51 -9.91 16.25 5.32 0.09 -9.82 16 19 C -0.08 -0.88 5.29 -104.98 -0.56 -1.44 16 20 C -0.13 -1.09 7.33 -39.11 -0.29 -1.38 16 21 C 0.11 0.88 7.29 -39.48 -0.29 0.59 16 22 F -0.13 -1.07 17.26 2.25 0.04 -1.03 16 23 C -0.13 -0.99 9.80 -39.40 -0.39 -1.38 16 24 C -0.01 -0.12 6.31 -39.57 -0.25 -0.37 16 25 Cl -0.05 -0.40 28.95 -51.86 -1.50 -1.90 16 26 C -0.07 -0.70 9.39 -39.14 -0.37 -1.07 16 27 C 0.12 1.91 5.52 -3.71 -0.02 1.89 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.39 10.52 6.89 -40.82 -0.28 10.24 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.70 4.45 -51.92 -0.23 0.46 16 37 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.15 1.13 6.05 -52.49 -0.32 0.81 16 39 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.15 1.70 8.00 -52.48 -0.42 1.28 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.11 2.15 6.19 -51.93 -0.32 1.83 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -32.89 361.63 -9.45 -42.34 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.34 Total: 6.20 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.05 Total: -3.36 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.11 Total: -55.59 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.89 -9.45 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690424821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.467 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds