Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99904 * 2 1 4 4 H 1.48501 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47033 * 299.99586 * 3 2 1 6 6 H 1.48494 * 109.46886 * 59.99811 * 3 2 1 7 7 C 1.38812 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00217 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84935 * 25.32767 * 10 9 7 12 12 C 1.53786 * 113.61643 * 156.52439 * 10 9 7 13 13 C 1.53783 * 87.08050 * 140.06125 * 12 10 9 14 14 H 1.09005 * 113.60997 * 89.20380 * 13 12 10 15 15 C 1.52997 * 113.61545 * 220.02097 * 13 12 10 16 16 N 1.46498 * 109.47113 * 185.00271 * 15 13 12 17 17 C 1.34783 * 120.00021 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99653 * 179.97438 * 17 16 15 20 20 C 1.50705 * 109.46668 * 180.02562 * 19 17 16 21 21 C 1.38239 * 120.00810 * 100.00204 * 20 19 17 22 22 C 1.38211 * 120.05244 * 179.97438 * 21 20 19 23 23 C 1.38261 * 120.06194 * 0.02562 * 22 21 20 24 24 C 1.38280 * 120.01107 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 120.02699 * 179.97438 * 24 23 22 26 26 C 1.38406 * 120.00506 * 279.72342 * 20 19 17 27 27 F 1.35099 * 120.03154 * 0.02562 * 26 20 19 28 28 C 1.53781 * 113.61305 * 254.13287 * 10 9 7 29 29 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99725 * 359.97438 * 9 7 2 31 31 H 1.08992 * 113.61675 * 254.61383 * 12 10 9 32 32 H 1.09000 * 113.60973 * 25.51671 * 12 10 9 33 33 H 1.09006 * 109.46955 * 304.99851 * 15 13 12 34 34 H 1.08999 * 109.47327 * 65.00182 * 15 13 12 35 35 H 0.97004 * 119.99763 * 0.02562 * 16 15 13 36 36 H 1.08993 * 109.47364 * 299.99930 * 19 17 16 37 37 H 1.09004 * 109.47588 * 60.00564 * 19 17 16 38 38 H 1.08003 * 119.97271 * 359.95076 * 21 20 19 39 39 H 1.07993 * 119.97322 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.99627 * 180.02562 * 23 22 21 41 41 H 1.08999 * 113.61567 * 334.48111 * 28 10 9 42 42 H 1.08998 * 113.61196 * 105.38466 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0561 -3.5693 0.4302 12 6 1.2469 -4.8365 0.5618 13 6 1.8623 -5.6909 -0.5590 14 1 2.8060 -6.1608 -0.2817 15 6 0.8747 -6.6712 -1.1949 16 7 1.5797 -7.5166 -2.1615 17 6 0.9064 -8.4610 -2.8481 18 8 -0.2833 -8.6106 -2.6660 19 6 1.6316 -9.3302 -3.8428 20 6 0.6588 -10.2959 -4.4691 21 6 0.1369 -10.0362 -5.7225 22 6 -0.7549 -10.9215 -6.2980 23 6 -1.1270 -12.0681 -5.6208 24 6 -0.6074 -12.3299 -4.3664 25 17 -1.0749 -13.7691 -3.5155 26 6 0.2922 -11.4459 -3.7918 27 9 0.8056 -11.7032 -2.5689 28 6 2.0325 -4.3828 -1.3548 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 1.5545 -5.1413 1.5621 32 1 0.1684 -4.7075 0.4704 33 1 0.4333 -7.2968 -0.4190 34 1 0.0879 -6.1151 -1.7046 35 1 2.5314 -7.3972 -2.3069 36 1 2.0723 -8.7044 -4.6188 37 1 2.4190 -9.8861 -3.3336 38 1 0.4260 -9.1406 -6.2524 39 1 -1.1615 -10.7176 -7.2774 40 1 -1.8237 -12.7594 -6.0717 41 1 1.1684 -4.1301 -1.9693 42 1 2.9739 -4.3216 -1.9008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691117295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -38.435120 kcal Electronic energy + Delta-G solvation = -25680.827745 eV Core-core repulsion = 21601.781485 eV Total energy + Delta-G solvation = -4079.046260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.27011 -40.24381 -39.25566 -38.38996 -36.93106 -34.72453 -33.42075 -33.19284 -30.83667 -30.35356 -28.77102 -26.72678 -25.11081 -23.90453 -23.26245 -22.61103 -21.07087 -20.59250 -19.07885 -18.11575 -17.33442 -17.18170 -17.00768 -16.73700 -15.94655 -15.91743 -15.45949 -14.92590 -14.83219 -14.72425 -13.96013 -13.90117 -13.77683 -13.53194 -13.48434 -13.29009 -12.99030 -12.73489 -12.10941 -11.93393 -11.87177 -11.82994 -11.80191 -11.39186 -11.31082 -11.25264 -10.86927 -10.55143 -10.30342 -10.13739 -9.96205 -9.83955 -9.52923 -9.24145 -9.08093 -9.05848 -8.88930 -6.97925 -5.79988 -3.08916 0.56062 0.62141 1.61813 2.51146 2.86282 3.24609 3.40992 3.46464 3.48933 3.69579 3.99796 4.31139 4.55567 4.56663 4.63401 4.67548 4.81473 4.94877 4.99153 5.01032 5.19117 5.22835 5.43118 5.45087 5.48594 5.52464 5.68258 5.80652 5.82509 5.84638 5.91623 6.07546 6.22838 6.24727 6.29219 6.34069 6.42446 6.56902 6.80551 7.09546 7.39416 7.67825 8.10999 8.38533 9.49614 10.08022 10.42099 11.42432 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027128 B = 0.001722 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.910526 B =16260.355700 C =16620.492747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.074 0.926 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.132 3.868 16 N -0.724 5.724 17 C 0.511 3.489 18 O -0.534 6.534 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.075 4.075 22 C -0.117 4.117 23 C -0.085 4.085 24 C -0.074 4.074 25 Cl -0.052 7.052 26 C 0.127 3.873 27 F -0.124 7.124 28 C -0.160 4.160 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.078 0.922 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -27.665 -12.905 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.009 3.991 16 N -0.375 5.375 17 C 0.297 3.703 18 O -0.410 6.410 19 C -0.144 4.144 20 C -0.089 4.089 21 C -0.094 4.094 22 C -0.135 4.135 23 C -0.103 4.103 24 C -0.101 4.101 25 Cl -0.023 7.023 26 C 0.107 3.893 27 F -0.102 7.102 28 C -0.201 4.201 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.096 0.904 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.181 -27.711 -12.602 30.520 hybrid contribution 0.595 0.791 0.223 1.015 sum 2.776 -26.920 -12.379 29.759 Atomic orbital electron populations 1.69670 1.05136 1.25643 1.57525 1.24782 0.95536 0.97818 1.02881 0.86116 0.78771 0.84090 0.77196 1.20537 1.21864 1.21846 1.19344 0.91095 0.84233 1.42793 0.91041 1.42423 1.05774 0.99894 1.87039 1.21521 0.95234 0.85064 0.92846 0.90756 1.23426 1.00921 0.97049 0.96767 1.22692 0.98447 0.94446 0.99064 0.89354 1.21450 0.95024 0.91784 0.90834 1.46019 1.12857 1.36140 1.42481 1.20337 0.87743 0.80718 0.81540 1.90747 1.15119 1.69203 1.65938 1.20631 0.97679 0.96905 0.99189 1.19309 1.00367 0.93790 0.95454 1.21060 0.95436 0.99287 0.93578 1.21147 0.97924 0.93679 1.00745 1.20994 0.99215 0.98139 0.91975 1.20956 1.01518 0.91717 0.95947 1.98391 1.91097 1.35705 1.77106 1.17175 0.95850 0.94624 0.81672 1.91535 1.84864 1.93804 1.39982 1.23991 1.01251 0.94781 1.00107 0.93490 0.78067 0.91970 0.90098 0.91763 0.91179 0.76525 0.86894 0.87378 0.84232 0.84165 0.83972 0.90357 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.65 5.41 -52.64 -0.28 -17.93 16 10 C 0.17 3.14 4.47 -67.12 -0.30 2.84 16 11 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 12 C -0.14 -2.23 7.39 -25.92 -0.19 -2.42 16 13 C -0.13 -1.64 3.76 -89.66 -0.34 -1.98 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 16 N -0.72 -7.61 5.56 -60.30 -0.33 -7.94 16 17 C 0.51 6.02 7.82 -10.98 -0.09 5.94 16 18 O -0.53 -8.70 15.96 5.56 0.09 -8.61 16 19 C -0.10 -0.81 5.56 -29.03 -0.16 -0.97 16 20 C -0.09 -0.81 4.42 -104.56 -0.46 -1.28 16 21 C -0.08 -0.55 9.67 -39.59 -0.38 -0.94 16 22 C -0.12 -0.75 10.04 -39.58 -0.40 -1.15 16 23 C -0.08 -0.63 9.83 -39.56 -0.39 -1.02 16 24 C -0.07 -0.72 6.33 -39.43 -0.25 -0.97 16 25 Cl -0.05 -0.50 28.62 -51.86 -1.48 -1.98 16 26 C 0.13 1.38 7.11 -39.39 -0.28 1.10 16 27 F -0.12 -1.50 16.23 2.25 0.04 -1.46 16 28 C -0.16 -2.56 7.45 -25.78 -0.19 -2.75 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 10.18 7.91 -40.82 -0.32 9.86 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 35 H 0.40 3.04 8.47 -40.82 -0.35 2.69 16 36 H 0.11 0.54 8.00 -51.93 -0.42 0.13 16 37 H 0.11 0.67 7.94 -51.93 -0.41 0.26 16 38 H 0.14 0.71 8.04 -52.48 -0.42 0.28 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -33.89 377.64 -9.94 -43.84 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.66 Total: 7.85 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.70 Total: -9.26 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.10 Total: -53.22 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.89 -9.94 -43.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691117295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.402 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds