Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00261 * 2 1 4 4 H 1.48501 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46759 * 299.99773 * 3 2 1 6 6 H 1.48493 * 109.47119 * 59.99853 * 3 2 1 7 7 C 1.38814 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99905 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.64917 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27478 * 178.92091 * 10 9 7 12 12 C 1.55156 * 102.93905 * 337.80757 * 11 10 9 13 13 H 1.09006 * 111.00463 * 277.38658 * 12 11 10 14 14 C 1.53004 * 111.00480 * 153.57619 * 12 11 10 15 15 N 1.46499 * 109.47198 * 174.99948 * 14 12 11 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 C 1.50698 * 109.46944 * 179.97438 * 18 16 15 20 20 C 1.38461 * 120.02266 * 269.72524 * 19 18 16 21 21 F 1.35102 * 120.01379 * 359.97334 * 20 19 18 22 22 C 1.38443 * 119.96610 * 179.74793 * 20 19 18 23 23 C 1.38225 * 119.99964 * 0.52279 * 22 20 19 24 24 C 1.38199 * 120.03775 * 359.72509 * 23 22 20 25 25 C 1.38296 * 120.01953 * 89.99762 * 19 18 16 26 26 Cl 1.73593 * 120.00167 * 359.97438 * 25 19 18 27 27 C 1.47422 * 125.64856 * 180.02562 * 9 7 2 28 28 H 0.97002 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88604 * 59.49901 * 10 9 7 30 30 H 1.09003 * 110.01390 * 298.40977 * 10 9 7 31 31 H 1.08997 * 110.72286 * 219.44443 * 11 10 9 32 32 H 1.09000 * 110.87296 * 96.23859 * 11 10 9 33 33 H 1.09009 * 109.46730 * 54.99735 * 14 12 11 34 34 H 1.08998 * 109.46846 * 295.00280 * 14 12 11 35 35 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 36 36 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 37 37 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 38 38 H 1.08000 * 119.99961 * 180.25633 * 22 20 19 39 39 H 1.07999 * 119.98004 * 179.74961 * 23 22 20 40 40 H 1.08003 * 119.98488 * 179.97438 * 24 23 22 41 41 H 1.08998 * 110.37155 * 85.31051 * 27 9 7 42 42 H 1.09000 * 110.36817 * 322.98460 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0278 12 6 0.8523 -4.6560 -0.6117 13 1 0.8577 -4.5966 -1.7001 14 6 1.0370 -6.1008 -0.1434 15 7 2.2065 -6.6833 -0.8063 16 6 2.5611 -7.9580 -0.5497 17 8 1.9150 -8.6212 0.2337 18 6 3.7604 -8.5591 -1.2362 19 6 3.9394 -9.9837 -0.7787 20 6 4.7279 -10.2631 0.3246 21 9 5.3376 -9.2586 0.9913 22 6 4.8873 -11.5719 0.7471 23 6 4.2683 -12.5998 0.0610 24 6 3.4854 -12.3215 -1.0433 25 6 3.3208 -11.0134 -1.4640 26 17 2.3372 -10.6650 -2.8513 27 6 1.9334 -3.7311 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5570 -2.0519 -0.8842 30 1 -0.5574 -2.0842 0.8998 31 1 -1.2980 -4.2513 -0.6785 32 1 -0.6341 -4.4206 0.9781 33 1 0.1495 -6.6810 -0.3963 34 1 1.1859 -6.1166 0.9362 35 1 2.7229 -6.1529 -1.4330 36 1 3.6087 -8.5401 -2.3155 37 1 4.6503 -7.9824 -0.9843 38 1 5.4989 -11.7900 1.6101 39 1 4.3962 -13.6210 0.3884 40 1 3.0025 -13.1254 -1.5790 41 1 2.1652 -4.0419 1.0203 42 1 2.8336 -3.7406 -0.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691167947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -43.870429 kcal Electronic energy + Delta-G solvation = -26417.993665 eV Core-core repulsion = 22338.711712 eV Total energy + Delta-G solvation = -4079.281953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.24780 -40.17679 -39.09470 -37.61552 -36.82393 -34.65723 -33.36965 -32.46736 -30.81371 -29.94420 -28.71388 -27.61993 -25.40973 -23.64564 -23.24683 -22.35443 -20.65409 -19.98625 -19.65598 -18.13315 -17.27626 -17.22564 -16.70455 -16.53963 -15.82028 -15.78588 -15.32735 -15.10953 -14.72720 -14.52957 -13.93086 -13.90823 -13.75794 -13.55625 -13.30937 -13.14413 -12.64033 -12.33733 -12.08436 -11.91533 -11.81904 -11.75389 -11.69752 -11.38217 -11.22101 -10.89853 -10.81493 -10.40878 -10.15181 -10.01659 -9.90050 -9.79874 -9.66011 -9.18940 -9.07405 -8.96156 -8.60636 -6.83357 -5.71596 -3.05090 0.59102 0.65689 1.67031 2.62794 2.92457 3.33419 3.39338 3.44729 3.47306 3.86051 4.07885 4.32856 4.43147 4.49028 4.76114 4.78094 4.95618 5.04267 5.13383 5.21862 5.23754 5.42676 5.48214 5.55092 5.61289 5.66626 5.69604 5.78072 5.90174 6.04925 6.06983 6.30573 6.35315 6.43773 6.50237 6.53976 6.68988 6.91560 7.52095 7.56342 7.63154 7.82876 8.21978 8.25844 9.21970 9.82383 10.48500 11.40252 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.002209 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.433489 B =12674.663976 C =13293.591748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.133 3.867 15 N -0.723 5.723 16 C 0.518 3.482 17 O -0.536 6.536 18 C -0.112 4.112 19 C -0.089 4.089 20 C 0.126 3.874 21 F -0.128 7.128 22 C -0.149 4.149 23 C -0.080 4.080 24 C -0.121 4.121 25 C 0.003 3.997 26 Cl -0.053 7.053 27 C 0.142 3.858 28 H 0.251 0.749 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.019 0.981 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -26.686 -4.341 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.010 3.990 15 N -0.374 5.374 16 C 0.303 3.697 17 O -0.413 6.413 18 C -0.152 4.152 19 C -0.091 4.091 20 C 0.106 3.894 21 F -0.107 7.107 22 C -0.168 4.168 23 C -0.098 4.098 24 C -0.140 4.140 25 C -0.024 4.024 26 Cl -0.023 7.023 27 C 0.016 3.984 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.037 0.963 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.713 -26.830 -3.862 28.182 hybrid contribution 0.665 1.458 -0.275 1.626 sum 8.377 -25.372 -4.137 27.037 Atomic orbital electron populations 1.69978 1.04884 1.24902 1.57188 1.24815 0.95737 0.97704 1.02324 0.86042 0.78697 0.83779 0.77239 1.20518 1.21765 1.21757 1.19101 0.90441 0.82434 1.43624 0.90432 1.44489 1.01747 0.99895 1.87163 1.21138 0.84324 0.88157 1.01122 1.22856 0.95421 0.99395 0.99705 1.22621 0.98617 0.91991 1.00487 0.90208 1.21410 0.87104 0.93162 0.97345 1.46027 1.31590 1.12900 1.46897 1.20179 0.85369 0.81889 0.82270 1.90716 1.54235 1.60811 1.35493 1.20686 0.99298 0.92309 1.02899 1.19106 0.98992 0.95017 0.95996 1.17284 0.95308 0.85185 0.91624 1.91538 1.80686 1.59474 1.78956 1.21234 1.02697 0.90820 1.02023 1.20950 0.95362 0.99473 0.94028 1.21086 1.00174 0.94772 0.97930 1.20515 0.96224 0.93825 0.91837 1.98390 1.68490 1.95341 1.40127 1.21585 0.93959 0.86120 0.96744 0.93809 0.93569 0.93907 0.92008 0.92215 0.91663 0.91335 0.76337 0.86909 0.87059 0.83974 0.83965 0.84167 0.96310 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.44 3.39 -170.07 -0.58 -16.02 16 10 C 0.18 4.30 5.37 -3.07 -0.02 4.28 16 11 C -0.13 -2.47 6.42 -24.90 -0.16 -2.63 16 12 C -0.12 -1.94 3.05 -88.46 -0.27 -2.21 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 1.94 5.13 -4.04 -0.02 1.92 16 15 N -0.72 -9.17 5.50 -60.29 -0.33 -9.50 16 16 C 0.52 6.96 7.82 -10.99 -0.09 6.87 16 17 O -0.54 -9.17 16.03 5.55 0.09 -9.08 16 18 C -0.11 -1.14 5.26 -29.04 -0.15 -1.29 16 19 C -0.09 -0.96 4.38 -104.52 -0.46 -1.42 16 20 C 0.13 1.34 7.24 -39.42 -0.29 1.05 16 21 F -0.13 -1.51 16.47 2.25 0.04 -1.47 16 22 C -0.15 -1.20 10.03 -39.51 -0.40 -1.60 16 23 C -0.08 -0.53 10.04 -39.60 -0.40 -0.93 16 24 C -0.12 -0.93 9.83 -39.54 -0.39 -1.32 16 25 C 0.00 0.03 6.31 -39.50 -0.25 -0.22 16 26 Cl -0.05 -0.50 27.30 -51.86 -1.42 -1.92 16 27 C 0.14 2.86 6.65 -2.52 -0.02 2.84 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 30 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 33 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 35 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 36 H 0.11 0.94 6.91 -51.93 -0.36 0.58 16 37 H 0.11 0.97 7.63 -51.93 -0.40 0.57 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -33.63 367.87 -9.87 -43.50 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.62 Total: -0.01 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.15 Total: -1.53 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.34 Total: -52.16 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.42 Total: -1.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.63 -9.87 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691167947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.370 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds