Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00261 * 2 1 4 4 H 1.48501 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46759 * 299.99773 * 3 2 1 6 6 H 1.48493 * 109.47119 * 59.99853 * 3 2 1 7 7 C 1.38814 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99905 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.64917 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27478 * 178.92091 * 10 9 7 12 12 C 1.55156 * 102.93905 * 337.80757 * 11 10 9 13 13 H 1.09006 * 111.00463 * 277.38658 * 12 11 10 14 14 C 1.53004 * 111.00480 * 153.57619 * 12 11 10 15 15 N 1.46499 * 109.47198 * 174.99948 * 14 12 11 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 C 1.50698 * 109.46944 * 179.97438 * 18 16 15 20 20 C 1.38461 * 120.02266 * 269.72524 * 19 18 16 21 21 F 1.35102 * 120.01379 * 359.97334 * 20 19 18 22 22 C 1.38443 * 119.96610 * 179.74793 * 20 19 18 23 23 C 1.38225 * 119.99964 * 0.52279 * 22 20 19 24 24 C 1.38199 * 120.03775 * 359.72509 * 23 22 20 25 25 C 1.38296 * 120.01953 * 89.99762 * 19 18 16 26 26 Cl 1.73593 * 120.00167 * 359.97438 * 25 19 18 27 27 C 1.47422 * 125.64856 * 180.02562 * 9 7 2 28 28 H 0.97002 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88604 * 59.49901 * 10 9 7 30 30 H 1.09003 * 110.01390 * 298.40977 * 10 9 7 31 31 H 1.08997 * 110.72286 * 219.44443 * 11 10 9 32 32 H 1.09000 * 110.87296 * 96.23859 * 11 10 9 33 33 H 1.09009 * 109.46730 * 54.99735 * 14 12 11 34 34 H 1.08998 * 109.46846 * 295.00280 * 14 12 11 35 35 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 36 36 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 37 37 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 38 38 H 1.08000 * 119.99961 * 180.25633 * 22 20 19 39 39 H 1.07999 * 119.98004 * 179.74961 * 23 22 20 40 40 H 1.08003 * 119.98488 * 179.97438 * 24 23 22 41 41 H 1.08998 * 110.37155 * 85.31051 * 27 9 7 42 42 H 1.09000 * 110.36817 * 322.98460 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0278 12 6 0.8523 -4.6560 -0.6117 13 1 0.8577 -4.5966 -1.7001 14 6 1.0370 -6.1008 -0.1434 15 7 2.2065 -6.6833 -0.8063 16 6 2.5611 -7.9580 -0.5497 17 8 1.9150 -8.6212 0.2337 18 6 3.7604 -8.5591 -1.2362 19 6 3.9394 -9.9837 -0.7787 20 6 4.7279 -10.2631 0.3246 21 9 5.3376 -9.2586 0.9913 22 6 4.8873 -11.5719 0.7471 23 6 4.2683 -12.5998 0.0610 24 6 3.4854 -12.3215 -1.0433 25 6 3.3208 -11.0134 -1.4640 26 17 2.3372 -10.6650 -2.8513 27 6 1.9334 -3.7311 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5570 -2.0519 -0.8842 30 1 -0.5574 -2.0842 0.8998 31 1 -1.2980 -4.2513 -0.6785 32 1 -0.6341 -4.4206 0.9781 33 1 0.1495 -6.6810 -0.3963 34 1 1.1859 -6.1166 0.9362 35 1 2.7229 -6.1529 -1.4330 36 1 3.6087 -8.5401 -2.3155 37 1 4.6503 -7.9824 -0.9843 38 1 5.4989 -11.7900 1.6101 39 1 4.3962 -13.6210 0.3884 40 1 3.0025 -13.1254 -1.5790 41 1 2.1652 -4.0419 1.0203 42 1 2.8336 -3.7406 -0.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691167947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -64.223253 kcal Electronic energy + Delta-G solvation = -26418.876230 eV Core-core repulsion = 22338.711712 eV Total energy + Delta-G solvation = -4080.164517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.02996 -41.10542 -39.96530 -39.17559 -37.50086 -36.05048 -34.38695 -34.00923 -31.68178 -31.42803 -30.15397 -28.72933 -27.13732 -25.18206 -23.90111 -23.17295 -22.07499 -21.56499 -21.00373 -18.93553 -18.79487 -18.09166 -17.93866 -17.50750 -16.86825 -16.66604 -16.60598 -16.33291 -15.94354 -15.74420 -15.53920 -14.81816 -14.73145 -14.53226 -14.45890 -14.02683 -13.96534 -13.84445 -13.56885 -13.27796 -13.04245 -12.77272 -12.69574 -12.63641 -12.45698 -12.37502 -11.98693 -11.94055 -11.87713 -11.84880 -11.55490 -11.47566 -11.02475 -10.72153 -10.09401 -9.87027 -9.72888 -8.90478 -7.85674 -5.21246 -0.04096 0.00992 0.99493 1.45488 1.46574 1.56866 1.59772 2.11694 2.48976 2.50786 3.20553 3.32724 3.37079 3.60519 3.68722 3.74768 3.89165 3.93050 4.02114 4.04881 4.22009 4.34277 4.38870 4.44380 4.53431 4.61138 4.70582 4.80414 4.86457 4.91320 5.02964 5.05129 5.07053 5.08947 5.21309 5.33747 5.45406 5.47245 5.66918 5.70865 5.77550 6.19672 6.51698 7.09983 7.20221 7.77547 8.41992 9.25121 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.002209 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.433489 B =12674.663976 C =13293.591748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.094 4.094 13 H 0.092 0.908 14 C 0.146 3.854 15 N -0.717 5.717 16 C 0.517 3.483 17 O -0.574 6.574 18 C -0.107 4.107 19 C -0.109 4.109 20 C 0.097 3.903 21 F -0.143 7.143 22 C -0.150 4.150 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.013 4.013 26 Cl -0.058 7.058 27 C 0.138 3.862 28 H 0.246 0.754 29 H 0.013 0.987 30 H 0.003 0.997 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.162 0.838 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.016 0.984 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.600 -28.991 -4.967 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.110 0.890 14 C 0.022 3.978 15 N -0.369 5.369 16 C 0.304 3.696 17 O -0.454 6.454 18 C -0.146 4.146 19 C -0.112 4.112 20 C 0.078 3.922 21 F -0.121 7.121 22 C -0.169 4.169 23 C -0.088 4.088 24 C -0.139 4.139 25 C -0.040 4.040 26 Cl -0.028 7.028 27 C 0.013 3.987 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.021 0.979 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.180 0.820 39 H 0.197 0.803 40 H 0.180 0.820 41 H 0.034 0.966 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.046 -29.156 -4.508 30.858 hybrid contribution 0.286 2.090 -0.048 2.110 sum 9.332 -27.066 -4.556 28.990 Atomic orbital electron populations 1.70202 1.06344 1.25167 1.58483 1.25684 0.96647 1.01138 1.02775 0.84997 0.78235 0.79383 0.76653 1.18843 1.21804 1.22149 1.19512 0.91046 0.83734 1.42639 0.89851 1.44821 1.02510 1.01261 1.86968 1.20907 0.83835 0.91776 0.97670 1.22720 0.97227 0.95014 1.01224 1.22418 0.95906 0.92268 1.00791 0.88993 1.21133 0.88245 0.91778 0.96671 1.45939 1.31131 1.12999 1.46813 1.20695 0.85691 0.81546 0.81618 1.90693 1.55686 1.61733 1.37259 1.20691 0.98071 0.92410 1.03464 1.19229 0.99899 0.95346 0.96680 1.17649 0.96392 0.85949 0.92248 1.91493 1.81081 1.60230 1.79308 1.21590 1.02612 0.90110 1.02565 1.21406 0.93672 1.00835 0.92879 1.21476 0.99808 0.94520 0.98121 1.20728 0.96611 0.94617 0.92051 1.98381 1.68661 1.95454 1.40345 1.21765 0.95426 0.84420 0.97104 0.94454 0.96846 0.97872 0.89594 0.91225 0.90902 0.92587 0.74928 0.85198 0.85821 0.82026 0.80254 0.81951 0.96608 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.07 10.31 21.65 0.22 -57.85 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.52 10.28 84.03 0.86 -12.66 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.63 -32.36 3.39 -691.96 -2.35 -34.70 16 10 C 0.18 9.11 5.37 86.73 0.47 9.58 16 11 C -0.12 -4.40 6.42 31.78 0.20 -4.19 16 12 C -0.09 -2.96 3.05 -9.39 -0.03 -2.99 16 13 H 0.09 2.72 8.14 -2.38 -0.02 2.71 16 14 C 0.15 3.99 5.13 86.38 0.44 4.44 16 15 N -0.72 -16.93 5.50 -463.05 -2.55 -19.47 16 16 C 0.52 13.30 7.82 87.66 0.69 13.99 16 17 O -0.57 -19.27 16.03 -3.04 -0.05 -19.32 16 18 C -0.11 -2.05 5.26 29.10 0.15 -1.90 16 19 C -0.11 -2.24 4.38 -19.80 -0.09 -2.33 16 20 C 0.10 1.98 7.24 22.37 0.16 2.14 16 21 F -0.14 -3.32 16.47 44.97 0.74 -2.58 16 22 C -0.15 -2.12 10.03 22.32 0.22 -1.90 16 23 C -0.07 -0.71 10.04 22.26 0.22 -0.49 16 24 C -0.12 -1.55 9.83 22.30 0.22 -1.33 16 25 C -0.01 -0.24 6.31 22.32 0.14 -0.10 16 26 Cl -0.06 -1.02 27.30 -2.72 -0.07 -1.10 16 27 C 0.14 5.41 6.65 86.86 0.58 5.99 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 30 H 0.00 0.17 7.50 -2.39 -0.02 0.15 16 31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 33 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.06 1.71 7.96 -2.39 -0.02 1.69 16 35 H 0.41 7.82 8.47 -92.71 -0.79 7.03 16 36 H 0.13 1.97 6.91 -2.39 -0.02 1.95 16 37 H 0.12 2.01 7.63 -2.39 -0.02 1.99 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.02 0.65 7.91 -2.39 -0.02 0.63 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -75.20 367.87 2.95 -72.25 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.27 Total: 9.97 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 4.71 Total: 4.70 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.67 Total: -112.02 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.74 Total: -2.58 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.10 kcal Total: -75.20 2.95 -72.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691167947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -75.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds