Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47194 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.84995 * 314.66148 * 15 14 13 17 17 C 1.53777 * 113.61708 * 85.85986 * 15 14 13 18 18 C 1.53955 * 87.02145 * 139.95014 * 17 15 14 19 19 H 1.09003 * 113.53218 * 89.19045 * 18 17 15 20 20 N 1.46902 * 113.74560 * 220.05641 * 18 17 15 21 21 C 1.46903 * 111.00141 * 252.59864 * 20 18 17 22 22 C 1.50697 * 109.46922 * 180.02562 * 21 20 18 23 23 C 1.38424 * 122.53556 * 269.73363 * 22 21 20 24 24 C 1.33392 * 114.91351 * 179.76330 * 23 22 21 25 25 S 1.75881 * 109.59692 * 0.48057 * 24 23 22 26 26 C 1.33386 * 122.53921 * 90.02390 * 22 21 20 27 27 C 1.53780 * 87.11263 * 334.64061 * 18 17 15 28 28 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47021 * 299.99722 * 14 13 11 33 33 H 1.09001 * 109.47001 * 59.99554 * 14 13 11 34 34 H 1.08998 * 113.61747 * 254.52720 * 17 15 14 35 35 H 1.09003 * 113.61293 * 25.43441 * 17 15 14 36 36 H 1.00904 * 110.99963 * 128.64612 * 20 18 17 37 37 H 1.09003 * 109.46923 * 300.00405 * 21 20 18 38 38 H 1.08996 * 109.46813 * 59.99554 * 21 20 18 39 39 H 1.07992 * 122.54200 * 0.02562 * 23 22 21 40 40 H 1.08007 * 125.19998 * 180.21086 * 24 23 22 41 41 H 1.07996 * 125.20233 * 0.02710 * 26 22 21 42 42 H 1.09002 * 113.61402 * 270.81258 * 27 18 17 43 43 H 1.09000 * 113.61499 * 139.90513 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 7.4905 -4.7360 0.0064 15 6 7.7562 -6.2427 0.0074 16 1 7.1334 -6.7818 0.7213 17 6 7.7647 -6.8677 -1.3976 18 6 8.9562 -7.7198 -0.9238 19 1 8.6612 -8.6638 -0.4655 20 7 10.0077 -7.8815 -1.9368 21 6 10.0081 -9.2455 -2.4821 22 6 11.0979 -9.3731 -3.5151 23 6 10.8860 -9.1093 -4.8574 24 6 11.9571 -9.2660 -5.6368 25 16 13.3250 -9.7872 -4.6618 26 6 12.3383 -9.7543 -3.2062 27 6 9.2481 -6.6052 0.0947 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4311 0.8927 30 1 3.6439 -3.4323 -0.8873 31 1 5.4288 -5.2436 0.0045 32 1 7.9347 -4.2890 -0.8830 33 1 7.9323 -4.2889 0.8970 34 1 6.8715 -7.4509 -1.6216 35 1 8.0198 -6.1617 -2.1880 36 1 10.9127 -7.6425 -1.5599 37 1 10.1857 -9.9586 -1.6771 38 1 9.0429 -9.4523 -2.9442 39 1 9.9274 -8.7961 -5.2435 40 1 11.9797 -9.1024 -6.7041 41 1 12.6837 -10.0048 -2.2141 42 1 9.9095 -5.8273 -0.2868 43 1 9.5506 -6.9767 1.0738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691425175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = 12.817663 kcal Electronic energy + Delta-G solvation = -22842.229353 eV Core-core repulsion = 19333.662463 eV Total energy + Delta-G solvation = -3508.566890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04420 -39.03830 -38.47289 -35.04011 -33.64781 -32.42172 -30.36624 -29.69304 -27.39257 -26.24786 -25.74373 -25.51010 -23.05771 -21.83851 -20.58325 -19.78020 -19.10000 -18.11855 -17.84403 -16.56637 -16.34164 -16.05712 -15.61413 -15.40529 -15.29031 -15.00908 -14.92740 -13.93859 -13.81216 -13.54838 -13.45297 -13.22159 -13.13708 -12.78735 -12.76741 -12.69266 -12.56269 -12.17271 -12.00376 -11.72485 -11.27759 -11.24844 -11.06661 -10.99180 -10.90068 -10.58722 -10.52262 -9.83725 -9.46958 -9.26875 -8.99520 -8.93125 -8.88921 -8.75036 -8.47712 -6.89626 -6.27425 -3.98857 0.57672 1.24524 1.56738 2.25126 2.80077 3.02862 3.33047 3.36516 3.52357 3.68024 3.86928 4.15040 4.33641 4.35702 4.41363 4.47612 4.53188 4.60144 4.77370 4.87150 4.94563 4.99801 5.10016 5.11717 5.12733 5.28483 5.34166 5.41029 5.47716 5.60066 5.61392 5.64762 5.79539 5.84395 5.92329 5.96074 6.03701 6.04612 6.09963 6.58956 6.66564 6.91799 7.66964 7.95681 8.43083 8.54555 9.18937 10.81799 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.001467 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.776085 B =19079.773456 C =19417.437339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.521 6.521 13 N -0.735 5.735 14 C 0.134 3.866 15 C -0.123 4.123 16 H 0.096 0.904 17 C -0.119 4.119 18 C 0.058 3.942 19 H 0.073 0.927 20 N -0.671 5.671 21 C 0.117 3.883 22 C -0.096 4.096 23 C -0.117 4.117 24 C -0.213 4.213 25 S 0.090 5.910 26 C -0.211 4.211 27 C -0.132 4.132 28 H 0.270 0.730 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.399 0.601 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.343 0.657 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.093 0.907 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.283 -25.255 -5.507 36.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.396 6.396 13 N -0.389 5.389 14 C 0.010 3.990 15 C -0.142 4.142 16 H 0.114 0.886 17 C -0.158 4.158 18 C -0.052 4.052 19 H 0.091 0.909 20 N -0.302 5.302 21 C -0.014 4.014 22 C -0.109 4.109 23 C -0.147 4.147 24 C -0.348 4.348 25 S 0.354 5.646 26 C -0.348 4.348 27 C -0.170 4.170 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.162 0.838 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.160 0.840 40 H 0.182 0.818 41 H 0.179 0.821 42 H 0.111 0.889 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 27.560 -23.692 -6.347 36.893 hybrid contribution -2.178 -0.888 0.967 2.543 sum 25.382 -24.580 -5.380 35.740 Atomic orbital electron populations 1.69945 1.05915 1.27735 1.48150 1.24711 0.94448 0.98959 0.93179 0.86731 0.81899 0.83262 0.79939 1.19209 1.19958 1.15920 1.22326 0.88326 0.97532 1.58711 0.89408 1.84788 1.09204 1.00216 1.97421 1.23281 0.94164 1.04266 1.05753 1.20273 0.90536 0.82382 0.75307 1.90697 1.58806 1.42265 1.47837 1.45947 1.07554 1.07918 1.77519 1.21250 0.81439 0.94030 1.02281 1.22629 0.97358 0.95420 0.98813 0.88625 1.23196 0.97276 0.98875 0.96426 1.23067 0.93578 0.96943 0.91636 0.90874 1.60614 1.08405 1.24337 1.36879 1.20644 0.96791 0.89590 0.94386 1.18858 0.94730 1.02230 0.95072 1.20095 1.00041 1.02094 0.92452 1.25631 0.96127 1.09355 1.03725 1.84321 1.14417 1.66870 0.98991 1.25495 0.97089 1.10037 1.02150 1.23187 0.96406 0.98484 0.98945 0.91969 0.88528 0.88528 0.76737 0.91370 0.91693 0.91596 0.88862 0.83814 0.94359 0.89886 0.84013 0.81834 0.82148 0.88889 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.94 27.74 -169.99 -4.71 17.22 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.13 10.04 30.94 0.31 -14.81 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.53 9.48 7.85 -10.98 -0.09 9.40 16 12 O -0.52 -11.44 15.86 5.56 0.09 -11.35 16 13 N -0.74 -9.28 5.56 -60.30 -0.33 -9.61 16 14 C 0.13 1.46 5.50 -4.05 -0.02 1.44 16 15 C -0.12 -0.91 3.75 -89.81 -0.34 -1.24 16 16 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 17 C -0.12 -0.89 7.45 -25.83 -0.19 -1.08 16 18 C 0.06 0.36 4.14 -66.81 -0.28 0.08 16 19 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 20 N -0.67 -4.39 6.55 -107.03 -0.70 -5.09 16 21 C 0.12 0.70 5.78 -4.98 -0.03 0.67 16 22 C -0.10 -0.64 5.31 -106.25 -0.56 -1.21 16 23 C -0.12 -0.82 9.98 -41.21 -0.41 -1.23 16 24 C -0.21 -1.37 11.23 29.04 0.33 -1.04 16 25 S 0.09 0.56 23.34 -107.50 -2.51 -1.95 16 26 C -0.21 -1.30 10.98 29.04 0.32 -0.98 16 27 C -0.13 -0.83 7.22 -25.92 -0.19 -1.02 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 30 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 31 H 0.40 3.88 8.47 -40.82 -0.35 3.54 16 32 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.85 7.92 -51.93 -0.41 0.44 16 36 H 0.34 2.08 8.54 -39.29 -0.34 1.74 16 37 H 0.04 0.20 8.11 -51.93 -0.42 -0.22 16 38 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -34.17 387.76 -11.13 -45.30 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.56 Total: 1.70 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.02 Total: -10.50 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.26 Total: -40.61 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -4.50 Total: -7.60 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.17 -11.13 -45.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691425175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.119 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds