Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47194 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.84995 * 314.66148 * 15 14 13 17 17 C 1.53777 * 113.61708 * 85.85986 * 15 14 13 18 18 C 1.53955 * 87.02145 * 139.95014 * 17 15 14 19 19 H 1.09003 * 113.53218 * 89.19045 * 18 17 15 20 20 N 1.46902 * 113.74560 * 220.05641 * 18 17 15 21 21 C 1.46903 * 111.00141 * 252.59864 * 20 18 17 22 22 C 1.50697 * 109.46922 * 180.02562 * 21 20 18 23 23 C 1.38424 * 122.53556 * 269.73363 * 22 21 20 24 24 C 1.33392 * 114.91351 * 179.76330 * 23 22 21 25 25 S 1.75881 * 109.59692 * 0.48057 * 24 23 22 26 26 C 1.33386 * 122.53921 * 90.02390 * 22 21 20 27 27 C 1.53780 * 87.11263 * 334.64061 * 18 17 15 28 28 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47021 * 299.99722 * 14 13 11 33 33 H 1.09001 * 109.47001 * 59.99554 * 14 13 11 34 34 H 1.08998 * 113.61747 * 254.52720 * 17 15 14 35 35 H 1.09003 * 113.61293 * 25.43441 * 17 15 14 36 36 H 1.00904 * 110.99963 * 128.64612 * 20 18 17 37 37 H 1.09003 * 109.46923 * 300.00405 * 21 20 18 38 38 H 1.08996 * 109.46813 * 59.99554 * 21 20 18 39 39 H 1.07992 * 122.54200 * 0.02562 * 23 22 21 40 40 H 1.08007 * 125.19998 * 180.21086 * 24 23 22 41 41 H 1.07996 * 125.20233 * 0.02710 * 26 22 21 42 42 H 1.09002 * 113.61402 * 270.81258 * 27 18 17 43 43 H 1.09000 * 113.61499 * 139.90513 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 7.4905 -4.7360 0.0064 15 6 7.7562 -6.2427 0.0074 16 1 7.1334 -6.7818 0.7213 17 6 7.7647 -6.8677 -1.3976 18 6 8.9562 -7.7198 -0.9238 19 1 8.6612 -8.6638 -0.4655 20 7 10.0077 -7.8815 -1.9368 21 6 10.0081 -9.2455 -2.4821 22 6 11.0979 -9.3731 -3.5151 23 6 10.8860 -9.1093 -4.8574 24 6 11.9571 -9.2660 -5.6368 25 16 13.3250 -9.7872 -4.6618 26 6 12.3383 -9.7543 -3.2062 27 6 9.2481 -6.6052 0.0947 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4311 0.8927 30 1 3.6439 -3.4323 -0.8873 31 1 5.4288 -5.2436 0.0045 32 1 7.9347 -4.2890 -0.8830 33 1 7.9323 -4.2889 0.8970 34 1 6.8715 -7.4509 -1.6216 35 1 8.0198 -6.1617 -2.1880 36 1 10.9127 -7.6425 -1.5599 37 1 10.1857 -9.9586 -1.6771 38 1 9.0429 -9.4523 -2.9442 39 1 9.9274 -8.7961 -5.2435 40 1 11.9797 -9.1024 -6.7041 41 1 12.6837 -10.0048 -2.2141 42 1 9.9095 -5.8273 -0.2868 43 1 9.5506 -6.9767 1.0738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691425175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -10.453595 kcal Electronic energy + Delta-G solvation = -22843.238471 eV Core-core repulsion = 19333.662463 eV Total energy + Delta-G solvation = -3509.576008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90885 -40.04572 -39.06748 -35.94315 -34.67175 -34.49294 -31.47593 -30.49841 -28.28947 -27.79372 -26.82694 -26.27069 -23.56143 -22.49861 -21.86199 -20.48970 -19.82030 -19.57111 -18.58373 -17.83193 -17.49278 -17.08235 -16.75009 -16.50934 -16.27428 -15.96373 -15.75428 -15.53426 -14.93617 -14.85535 -14.63451 -14.11009 -13.89573 -13.65165 -13.60717 -13.34590 -13.28611 -13.20079 -13.13260 -13.00372 -12.67890 -12.59634 -12.41670 -11.88103 -11.82586 -11.61746 -11.46815 -11.16797 -11.14646 -10.91729 -10.52867 -10.08591 -9.74070 -9.39360 -9.22350 -8.99163 -8.51206 -6.21972 0.10591 0.78861 1.00053 1.09799 1.31818 1.47597 1.56964 1.58882 1.76115 2.24224 2.29192 2.73059 2.87121 3.36491 3.59769 3.70704 3.87962 3.96261 3.98491 4.00517 4.15015 4.24396 4.32074 4.44048 4.48052 4.50068 4.55082 4.65677 4.76213 4.82756 4.89007 4.92580 4.98348 5.12845 5.15319 5.29732 5.41428 5.49535 5.53222 5.59739 5.71112 6.11657 6.18906 6.46769 6.50839 6.94142 7.22737 8.61138 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.001467 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.776085 B =19079.773456 C =19417.437339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.134 3.866 15 C -0.113 4.113 16 H 0.114 0.886 17 C -0.122 4.122 18 C 0.066 3.934 19 H 0.087 0.913 20 N -0.681 5.681 21 C 0.122 3.878 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.221 4.221 25 S 0.090 5.910 26 C -0.214 4.214 27 C -0.126 4.126 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.417 0.583 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.346 0.654 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.085 0.915 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.618 -26.714 -5.013 38.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.048 5.952 10 C -0.262 4.262 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.362 5.362 14 C 0.010 3.990 15 C -0.132 4.132 16 H 0.132 0.868 17 C -0.161 4.161 18 C -0.044 4.044 19 H 0.105 0.895 20 N -0.313 5.313 21 C -0.009 4.009 22 C -0.119 4.119 23 C -0.163 4.163 24 C -0.356 4.356 25 S 0.353 5.647 26 C -0.350 4.350 27 C -0.164 4.164 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.165 0.835 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.161 0.839 40 H 0.195 0.805 41 H 0.195 0.805 42 H 0.103 0.897 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 28.890 -25.214 -5.853 38.789 hybrid contribution -2.548 -0.606 0.775 2.731 sum 26.342 -25.820 -5.077 37.234 Atomic orbital electron populations 1.70020 1.07275 1.29002 1.49154 1.25552 0.95265 1.02215 0.92869 0.85869 0.80672 0.79640 0.80202 1.18740 1.18262 1.16138 1.22467 0.90240 0.96723 1.58267 0.91921 1.84728 1.06446 1.06412 1.97590 1.23277 0.95971 0.99474 1.07469 1.19985 0.89372 0.83523 0.75348 1.90686 1.59397 1.43982 1.50490 1.45745 1.08919 1.06605 1.74977 1.21383 0.79688 0.96603 1.01291 1.22606 0.98619 0.92659 0.99337 0.86802 1.23168 0.98272 0.98859 0.95755 1.22999 0.92864 0.97224 0.91269 0.89540 1.60566 1.08683 1.24861 1.37179 1.20608 0.96367 0.89516 0.94448 1.18985 0.95230 1.02591 0.95143 1.20269 1.00372 1.02673 0.92960 1.25879 0.96092 1.09089 1.04553 1.84310 1.14424 1.66760 0.99197 1.25735 0.96870 1.09556 1.02822 1.23150 0.95280 0.98270 0.99745 0.91374 0.86732 0.86884 0.74637 0.92778 0.92365 0.90978 0.90854 0.83479 0.93229 0.90243 0.83914 0.80537 0.80531 0.89691 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.95 13.97 21.65 0.30 -55.65 16 2 C 0.05 2.74 5.50 84.86 0.47 3.20 16 3 Si 0.91 45.30 27.74 68.60 1.90 47.20 16 4 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 7 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -9.10 18.55 -56.49 -1.05 -10.14 16 10 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 11 C 0.53 18.40 7.85 87.66 0.69 19.09 16 12 O -0.57 -24.67 15.86 -3.02 -0.05 -24.72 16 13 N -0.71 -16.42 5.56 -463.07 -2.57 -18.99 16 14 C 0.13 2.71 5.50 86.38 0.47 3.18 16 15 C -0.11 -1.38 3.75 -10.27 -0.04 -1.42 16 16 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 17 C -0.12 -1.57 7.45 31.18 0.23 -1.33 16 18 C 0.07 0.66 4.14 45.50 0.19 0.85 16 19 H 0.09 0.68 7.87 -2.39 -0.02 0.67 16 20 N -0.68 -7.73 6.55 -492.54 -3.23 -10.96 16 21 C 0.12 1.25 5.78 85.56 0.49 1.75 16 22 C -0.11 -1.31 5.31 -20.92 -0.11 -1.42 16 23 C -0.13 -1.77 9.98 21.22 0.21 -1.56 16 24 C -0.22 -2.69 11.23 66.72 0.75 -1.94 16 25 S 0.09 1.02 23.34 -56.49 -1.32 -0.30 16 26 C -0.21 -2.33 10.98 66.72 0.73 -1.60 16 27 C -0.13 -1.28 7.22 31.12 0.22 -1.06 16 28 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 29 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.42 6.84 8.47 -92.70 -0.79 6.06 16 32 H 0.05 1.28 7.88 -2.39 -0.02 1.27 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.27 7.92 -2.39 -0.02 1.25 16 36 H 0.35 3.60 8.54 -89.69 -0.77 2.83 16 37 H 0.05 0.40 8.11 -2.39 -0.02 0.38 16 38 H 0.08 0.87 8.13 -2.39 -0.02 0.85 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -74.12 387.76 -1.14 -75.26 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.56 Total: 14.62 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 5.43 Total: -16.32 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -5.50 Total: -85.60 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -2.37 Total: -10.44 kcal Total: -74.12 -1.14 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691425175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.807 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds