Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38460 * 119.88882 * 2 1 4 4 C 1.38197 * 120.34098 * 180.02562 * 3 2 1 5 5 C 1.38321 * 120.11610 * 359.97438 * 4 3 2 6 6 F 1.35103 * 120.11000 * 179.97438 * 5 4 3 7 7 C 1.39825 * 119.77823 * 359.97438 * 5 4 3 8 8 C 1.47696 * 120.16274 * 179.97438 * 7 5 4 9 9 O 1.21566 * 120.00497 * 359.72746 * 8 7 5 10 10 N 1.34777 * 119.99730 * 179.97438 * 8 7 5 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47428 * 180.02562 * 11 10 8 13 13 N 1.46506 * 109.47042 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99880 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99750 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00141 * 180.02562 * 14 13 12 17 17 S 1.80994 * 109.47335 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00273 * 179.97438 * 17 16 14 19 19 H 1.08011 * 120.00031 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00539 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99522 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00396 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47232 * 59.99594 * 22 20 18 24 24 H 1.48502 * 109.47356 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46817 * 299.99891 * 22 20 18 26 26 C 1.37855 * 119.89253 * 180.22757 * 2 1 3 27 27 H 1.08996 * 109.46951 * 90.00702 * 1 2 3 28 28 H 1.09004 * 109.47294 * 210.00180 * 1 2 3 29 29 H 1.08999 * 109.47715 * 330.00161 * 1 2 3 30 30 H 1.08005 * 119.83144 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.94276 * 179.97438 * 4 3 2 32 32 H 0.97008 * 120.00332 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47366 * 300.00746 * 11 10 8 34 34 H 1.09004 * 109.47181 * 60.00312 * 11 10 8 35 35 H 1.08992 * 109.46974 * 300.00496 * 12 11 10 36 36 H 1.09000 * 109.46986 * 60.00432 * 12 11 10 37 37 H 0.96999 * 120.00076 * 0.02562 * 13 12 11 38 38 H 1.09004 * 109.47043 * 300.00223 * 16 14 13 39 39 H 1.09000 * 109.46978 * 60.00144 * 16 14 13 40 40 H 0.96995 * 119.99998 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.06051 * 0.02685 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2004 0.0000 4 6 3.5789 1.2113 -0.0005 5 6 4.2824 0.0204 -0.0005 6 9 5.6333 0.0312 -0.0016 7 6 3.5906 -1.1948 0.0005 8 6 4.3331 -2.4715 0.0000 9 8 5.5488 -2.4677 -0.0064 10 7 3.6630 -3.6408 0.0015 11 6 4.3994 -4.9072 0.0004 12 6 3.4088 -6.0733 0.0020 13 7 4.1454 -7.3397 0.0002 14 6 3.4752 -8.5090 0.0017 15 8 2.2624 -8.5128 0.0040 16 6 4.2328 -9.8117 0.0005 17 16 3.0610 -11.1912 0.0021 18 6 4.1853 -12.5478 -0.0004 19 1 5.2501 -12.3667 -0.0019 20 6 3.7027 -13.8492 0.0006 21 7 2.4050 -14.0699 0.0039 22 14 4.8947 -15.2874 -0.0014 23 1 5.7518 -15.2217 1.2096 24 1 4.1326 -16.5620 -0.0006 25 1 5.7474 -15.2219 -1.2155 26 6 2.1940 -1.1951 -0.0047 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6524 2.1331 -0.0004 31 1 4.1106 2.1514 -0.0009 32 1 2.6929 -3.6439 0.0027 33 1 5.0246 -4.9632 -0.8906 34 1 5.0279 -4.9628 0.8893 35 1 2.7834 -6.0174 0.8928 36 1 2.7807 -6.0175 -0.8871 37 1 5.1154 -7.3366 -0.0012 38 1 4.8580 -9.8676 -0.8907 39 1 4.8612 -9.8673 0.8893 40 1 2.0677 -14.9793 0.0049 41 1 1.6533 -2.1300 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703107648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -125.993577 kcal Electronic energy + Delta-G solvation = -24873.954976 eV Core-core repulsion = 20793.155603 eV Total energy + Delta-G solvation = -4080.799373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.94933 -41.29906 -40.61070 -39.58587 -37.04176 -35.17452 -34.57726 -33.47160 -32.75445 -31.44815 -29.16665 -27.64010 -27.52611 -25.39199 -23.97254 -22.76045 -21.95991 -21.38694 -19.88391 -19.13347 -18.20995 -17.99748 -17.54795 -17.20221 -17.06862 -16.86868 -16.77909 -16.47952 -16.17924 -15.81647 -15.64077 -15.22418 -15.17706 -14.73985 -14.58840 -14.43937 -14.41423 -14.33227 -13.71345 -13.16453 -12.99196 -12.95757 -12.94138 -12.85091 -12.84540 -12.61857 -12.61005 -12.30298 -11.74849 -11.25473 -11.12468 -10.99722 -10.45141 -10.28180 -10.21427 -10.12007 -9.57459 -8.65797 -8.34209 -6.11977 -0.39698 0.09773 1.23936 1.44054 1.44292 1.54066 1.58061 1.65949 1.78095 2.27809 2.47650 2.58558 2.99981 3.14823 3.31679 3.45012 3.54311 3.70406 3.81068 3.97200 3.99301 4.13046 4.20526 4.31127 4.34193 4.52860 4.54481 4.77607 4.78700 4.83095 4.86019 4.91831 4.94772 5.09936 5.13609 5.32013 5.34847 5.42496 5.45349 5.77546 6.20165 6.28538 6.43170 6.98918 7.07303 7.18456 8.74654 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.001567 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.296236 B =17865.022478 C =18833.264526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.100 4.100 3 C -0.056 4.056 4 C -0.159 4.159 5 C 0.116 3.884 6 F -0.141 7.141 7 C -0.188 4.188 8 C 0.556 3.444 9 O -0.570 6.570 10 N -0.707 5.707 11 C 0.119 3.881 12 C 0.116 3.884 13 N -0.713 5.713 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.132 4.132 17 S -0.148 6.148 18 C -0.549 4.549 19 H 0.083 0.917 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.058 4.058 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.417 0.583 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.418 0.582 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 34.300 -0.017 34.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.074 4.074 4 C -0.177 4.177 5 C 0.096 3.904 6 F -0.119 7.119 7 C -0.192 4.192 8 C 0.344 3.656 9 O -0.450 6.450 10 N -0.361 5.361 11 C -0.005 4.005 12 C -0.008 4.008 13 N -0.368 5.368 14 C 0.324 3.676 15 O -0.438 6.438 16 C -0.283 4.283 17 S 0.079 5.921 18 C -0.697 4.697 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.076 4.076 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.189 0.811 31 H 0.178 0.822 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.359 34.159 -0.016 34.241 hybrid contribution 2.380 -1.126 -0.009 2.633 sum 0.021 33.033 -0.025 33.033 Atomic orbital electron populations 1.20903 0.87981 1.04563 1.03787 1.20305 0.98345 0.92150 0.99266 1.21568 0.92329 0.99775 0.93763 1.21438 0.95826 0.96692 1.03762 1.18198 0.76831 0.94620 1.00747 1.91533 1.29744 1.97370 1.93291 1.19977 0.95486 0.91514 1.12230 1.18345 0.86797 0.84406 0.76021 1.90833 1.15064 1.88022 1.51113 1.45509 1.11294 1.04459 1.74840 1.21341 0.94247 0.81271 1.03669 1.21372 0.94450 0.81474 1.03522 1.45513 1.11196 1.04103 1.75952 1.19981 0.87399 0.85215 0.74984 1.90697 1.15520 1.87680 1.49949 1.23385 1.02978 0.94993 1.06978 1.85514 1.12400 0.97081 1.97066 1.23188 0.94703 0.92789 1.58994 0.89934 1.26100 0.97598 1.01598 0.93731 1.70167 1.14164 1.22412 1.47909 0.85024 0.77645 0.76008 0.79446 1.18740 1.20371 1.18750 1.21396 0.90336 1.00476 0.95403 0.89776 0.90373 0.89640 0.81111 0.82244 0.74463 0.90392 0.90380 0.90558 0.90565 0.74469 0.87099 0.87095 0.91980 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.22 10.00 71.24 0.71 0.49 16 2 C -0.10 -0.68 5.87 -19.90 -0.12 -0.80 16 3 C -0.06 -0.35 9.69 22.31 0.22 -0.14 16 4 C -0.16 -1.76 10.01 22.28 0.22 -1.54 16 5 C 0.12 2.21 7.29 22.67 0.17 2.37 16 6 F -0.14 -3.62 15.55 44.97 0.70 -2.92 16 7 C -0.19 -3.27 5.88 -20.05 -0.12 -3.39 16 8 C 0.56 12.12 7.77 86.74 0.67 12.79 16 9 O -0.57 -17.54 15.34 -3.92 -0.06 -17.60 16 10 N -0.71 -10.81 5.51 -466.13 -2.57 -13.38 16 11 C 0.12 1.92 5.79 86.38 0.50 2.42 16 12 C 0.12 2.14 5.79 86.38 0.50 2.64 16 13 N -0.71 -16.26 5.56 -463.06 -2.57 -18.83 16 14 C 0.54 18.67 7.85 87.66 0.69 19.36 16 15 O -0.56 -24.44 15.86 -3.04 -0.05 -24.48 16 16 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 17 S -0.15 -8.05 20.57 -56.49 -1.16 -9.22 16 18 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 19 H 0.08 4.33 7.80 -2.90 -0.02 4.30 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 22 Si 1.00 43.33 29.55 68.60 2.03 45.35 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 26 C -0.06 -0.57 9.18 22.52 0.21 -0.36 16 27 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.08 0.10 8.08 -2.38 -0.02 0.08 16 29 H 0.08 -0.03 8.08 -2.39 -0.02 -0.05 16 30 H 0.17 -0.07 8.06 -2.91 -0.02 -0.10 16 31 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.42 3.82 6.51 -92.70 -0.60 3.21 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.42 6.99 8.47 -92.71 -0.79 6.21 16 38 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.16 0.70 6.41 -2.91 -0.02 0.68 16 Total: -1.00 -85.86 375.53 1.50 -84.36 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -0.30 Total: 11.74 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 5.20 Total: 0.12 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -4.85 Total: -87.36 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.11 Total: -42.08 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.70 Total: -2.92 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.22 kcal Total: -85.86 1.50 -84.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703107648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.632 kcal (2) G-P(sol) polarization free energy of solvation -85.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds