Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99827 * 3 2 1 6 6 H 1.48506 * 109.47215 * 59.99585 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.88651 * 325.70653 * 14 13 11 16 16 C 1.55158 * 111.00358 * 89.58398 * 14 13 11 17 17 C 1.54320 * 102.94591 * 153.58016 * 16 14 13 18 18 N 1.47024 * 107.26771 * 337.80635 * 17 16 14 19 19 C 1.34781 * 125.64793 * 178.99462 * 18 17 16 20 20 O 1.21281 * 119.99754 * 179.97438 * 19 18 17 21 21 C 1.50699 * 119.99875 * 359.97438 * 19 18 17 22 22 N 1.46504 * 109.46770 * 179.97438 * 21 19 18 23 23 C 1.34598 * 126.43245 * 125.00214 * 22 21 19 24 24 N 1.31072 * 106.67680 * 179.97438 * 23 22 21 25 25 N 1.28840 * 107.98862 * 359.97438 * 24 23 22 26 26 N 1.28738 * 109.40206 * 359.73801 * 25 24 23 27 27 C 1.47468 * 108.72700 * 358.97793 * 18 17 16 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.08999 * 110.72112 * 271.94563 * 16 14 13 33 33 H 1.09003 * 110.71785 * 35.21057 * 16 14 13 34 34 H 1.08996 * 109.88456 * 97.22386 * 17 16 14 35 35 H 1.08992 * 109.88351 * 218.39344 * 17 16 14 36 36 H 1.09001 * 109.46972 * 300.00094 * 21 19 18 37 37 H 1.08996 * 109.47083 * 60.00168 * 21 19 18 38 38 H 1.07998 * 126.66531 * 0.03360 * 23 22 21 39 39 H 1.09005 * 110.34596 * 265.25693 * 27 18 17 40 40 H 1.08994 * 110.40836 * 142.91009 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 1 1.4065 -7.7838 0.5759 16 6 2.1264 -8.2325 -1.4460 17 6 2.2699 -9.7611 -1.2905 18 7 3.0354 -10.0046 -0.0591 19 6 3.3574 -11.2147 0.4394 20 8 3.9957 -11.2968 1.4673 21 6 2.9243 -12.4657 -0.2807 22 7 3.3947 -13.6411 0.4566 23 6 2.6379 -14.6614 0.9013 24 7 3.4487 -15.4963 1.5042 25 7 4.6414 -15.0141 1.4330 26 7 4.6132 -13.8960 0.7955 27 6 3.3932 -8.7057 0.5406 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.1327 -7.9736 -1.8114 33 1 2.8968 -7.8382 -2.1087 34 1 1.2843 -10.2198 -1.2110 35 1 2.8045 -10.1723 -2.1466 36 1 1.8365 -12.4889 -0.3464 37 1 3.3492 -12.4728 -1.2844 38 1 1.5700 -14.7714 0.7833 39 1 4.3905 -8.4027 0.2213 40 1 3.3428 -8.7622 1.6279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703787930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = 66.547202 kcal Electronic energy + Delta-G solvation = -25598.654107 eV Core-core repulsion = 21578.416641 eV Total energy + Delta-G solvation = -4020.237466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.58994 -40.88813 -39.47865 -37.88617 -35.90759 -34.44820 -32.87197 -32.49973 -31.64883 -30.17678 -29.62495 -27.97670 -25.56375 -24.53965 -24.25022 -23.37481 -21.82258 -20.74798 -20.12807 -18.47149 -18.22481 -17.89463 -17.33338 -17.05282 -16.51003 -16.45296 -15.80445 -15.61056 -15.07991 -14.92992 -14.86311 -14.15469 -14.01488 -13.97343 -13.51920 -13.42579 -13.15751 -12.92346 -12.73333 -12.58262 -12.53945 -12.20006 -11.81275 -11.63716 -11.55264 -11.31319 -11.12394 -11.09510 -10.87664 -10.82099 -10.52077 -9.88634 -9.61904 -9.40014 -9.18990 -9.12357 -8.33331 -6.58906 -6.29079 -4.00340 0.76504 1.26851 1.75737 1.88330 2.12017 2.86487 2.89651 3.16757 3.22538 3.26802 3.36642 3.55117 3.64321 3.74116 3.98032 4.02413 4.13336 4.17043 4.29420 4.47840 4.65668 4.68322 4.92600 4.95554 5.01717 5.06692 5.21494 5.21891 5.30020 5.39571 5.49553 5.57598 5.61272 5.73759 5.77585 6.02897 6.36274 6.66019 7.29700 7.45920 7.53330 8.20163 8.28283 8.39364 9.16820 10.78381 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.045824 B = 0.001612 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.888070 B =17363.758618 C =17597.890242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.537 3.463 12 O -0.513 6.513 13 N -0.730 5.730 14 C 0.137 3.863 15 H 0.107 0.893 16 C -0.146 4.146 17 C 0.094 3.906 18 N -0.611 5.611 19 C 0.518 3.482 20 O -0.507 6.507 21 C 0.102 3.898 22 N -0.303 5.303 23 C 0.162 3.838 24 N -0.306 5.306 25 N -0.076 5.076 26 N -0.064 5.064 27 C 0.103 3.897 28 H 0.268 0.732 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.237 0.763 39 H 0.079 0.921 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -24.825 -5.874 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.385 5.385 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.185 4.185 17 C -0.029 4.029 18 N -0.347 5.347 19 C 0.303 3.697 20 O -0.380 6.380 21 C -0.024 4.024 22 N -0.105 5.105 23 C -0.137 4.137 24 N -0.153 5.153 25 N -0.071 5.071 26 N -0.050 5.050 27 C -0.020 4.020 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.236 0.764 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.498 -25.631 -4.799 26.310 hybrid contribution 1.400 1.904 -0.537 2.424 sum 4.898 -23.727 -5.336 24.808 Atomic orbital electron populations 1.70015 1.05965 1.27447 1.46818 1.24994 0.95030 0.99074 0.94435 0.86113 0.79590 0.81816 0.77954 1.19599 1.20531 1.20527 1.22902 0.94957 0.91556 1.59052 0.90810 1.85391 1.04729 0.96433 1.96747 1.23542 1.06778 0.95039 1.05138 1.20361 0.86452 0.86217 0.74627 1.90707 1.15315 1.85485 1.47150 1.45857 1.10195 1.04375 1.78064 1.21923 0.97650 0.81398 0.96010 0.87485 1.23116 1.04809 0.92460 0.98090 1.22266 0.96186 0.98085 0.86359 1.48229 1.55250 1.05001 1.26250 1.19732 0.80960 0.83385 0.85578 1.90889 1.38216 1.85686 1.23234 1.21945 1.03361 0.80803 0.96308 1.48170 1.06079 1.17757 1.38539 1.27783 1.02220 0.85682 0.97987 1.75016 0.97192 1.24760 1.18295 1.78700 1.13901 1.01524 1.12935 1.79032 1.01327 1.12361 1.12304 1.22451 0.98371 0.81292 0.99838 0.92173 0.89017 0.89054 0.76392 0.88598 0.89643 0.90352 0.90413 0.83690 0.84538 0.74729 0.90264 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.39 13.22 55.49 0.73 -24.66 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.82 6.16 36.01 0.22 -2.59 16 11 C 0.54 8.61 7.85 -10.98 -0.09 8.52 16 12 O -0.51 -10.23 15.55 5.56 0.09 -10.14 16 13 N -0.73 -7.59 5.22 -51.73 -0.27 -7.86 16 14 C 0.14 1.15 3.37 -65.78 -0.22 0.93 16 15 H 0.11 1.11 7.63 -51.93 -0.40 0.71 16 16 C -0.15 -0.87 6.65 -24.90 -0.17 -1.04 16 17 C 0.09 0.29 6.49 -3.06 -0.02 0.27 16 18 N -0.61 -3.54 3.33 -170.49 -0.57 -4.10 16 19 C 0.52 3.73 7.87 -10.98 -0.09 3.64 16 20 O -0.51 -6.37 15.97 5.56 0.09 -6.28 16 21 C 0.10 0.28 6.16 -5.19 -0.03 0.25 16 22 N -0.30 -2.13 3.19 -63.74 -0.20 -2.33 16 23 C 0.16 0.95 12.79 -90.39 -1.16 -0.21 16 24 N -0.31 -3.23 12.36 29.59 0.37 -2.87 16 25 N -0.08 -0.98 13.43 60.35 0.81 -0.17 16 26 N -0.06 -0.74 12.31 60.35 0.74 0.01 16 27 C 0.10 0.74 6.54 -2.50 -0.02 0.73 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.40 3.09 8.54 -40.82 -0.35 2.75 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.15 -0.26 8.08 -51.93 -0.42 -0.68 16 37 H 0.14 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.24 -0.04 8.06 -52.49 -0.42 -0.46 16 39 H 0.08 0.51 8.00 -51.93 -0.42 0.10 16 40 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -41.13 366.32 -6.21 -47.35 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.92 Total: -4.52 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.36 Total: -1.97 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 1.61 Total: -41.99 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.18 Total: -16.42 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -41.13 -6.21 -47.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703787930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.893 kcal (2) G-P(sol) polarization free energy of solvation -41.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds