Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48502 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46991 * 299.99595 * 3 2 1 6 6 H 1.48501 * 109.46940 * 59.99841 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 H 1.09008 * 110.64334 * 328.41743 * 14 13 11 16 16 C 1.55161 * 110.72256 * 91.75698 * 14 13 11 17 17 C 1.54910 * 101.58284 * 153.86606 * 16 14 13 18 18 N 1.47429 * 104.83088 * 322.98842 * 17 16 14 19 19 C 1.34769 * 125.64605 * 204.16441 * 18 17 16 20 20 O 1.21286 * 120.00050 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.00260 * 359.96111 * 19 18 17 22 22 N 1.46502 * 109.47273 * 179.97438 * 21 19 18 23 23 N 1.28878 * 125.45287 * 269.71827 * 22 21 19 24 24 C 1.31036 * 107.92027 * 179.89727 * 23 22 21 25 25 N 1.33322 * 106.89882 * 0.35894 * 24 23 22 26 26 N 1.28787 * 125.44908 * 90.02646 * 22 21 19 27 27 C 1.47018 * 108.70350 * 24.13179 * 18 17 16 28 28 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 30 30 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 31 31 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 32 32 H 1.09002 * 110.99906 * 271.93778 * 16 14 13 33 33 H 1.09004 * 111.00127 * 35.79050 * 16 14 13 34 34 H 1.08998 * 110.36539 * 204.15498 * 17 16 14 35 35 H 1.08998 * 110.45841 * 81.87633 * 17 16 14 36 36 H 1.09000 * 109.47411 * 299.99711 * 21 19 18 37 37 H 1.09005 * 109.47153 * 60.00054 * 21 19 18 38 38 H 1.07998 * 126.55287 * 180.13974 * 24 23 22 39 39 H 1.09002 * 109.88522 * 239.52207 * 27 18 17 40 40 H 1.09000 * 109.88347 * 118.35371 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 1 1.3842 -7.7684 0.5460 16 6 2.1732 -8.2494 -1.4407 17 6 2.3088 -9.7774 -1.2248 18 7 3.3283 -9.9203 -0.1694 19 6 4.1002 -11.0060 0.0351 20 8 4.9102 -11.0129 0.9378 21 6 3.9567 -12.2116 -0.8576 22 7 4.9000 -13.2489 -0.4328 23 7 6.1050 -13.3873 -0.8685 24 6 6.6382 -14.4176 -0.2593 25 7 5.7076 -14.9075 0.5601 26 7 4.6559 -14.1717 0.4316 27 6 3.3640 -8.6821 0.6224 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1245 -3.7313 -0.8893 31 1 3.8009 -6.1835 0.0004 32 1 1.1930 -7.9976 -1.8458 33 1 2.9686 -7.8736 -2.0843 34 1 2.6423 -10.2620 -2.1424 35 1 1.3601 -10.2014 -0.8958 36 1 2.9388 -12.5955 -0.7889 37 1 4.1692 -11.9278 -1.8884 38 1 7.6389 -14.7993 -0.3974 39 1 4.3592 -8.2402 0.5749 40 1 3.1004 -8.8967 1.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703788368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = 75.957846 kcal Electronic energy + Delta-G solvation = -25614.477596 eV Core-core repulsion = 21594.648207 eV Total energy + Delta-G solvation = -4019.829390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.74197 -40.87430 -39.45464 -37.83879 -35.44069 -34.41260 -33.48948 -32.48694 -31.61613 -30.20262 -29.62405 -27.98787 -25.55122 -24.48896 -24.36238 -23.27097 -21.75925 -20.68889 -20.27403 -18.59150 -18.28620 -17.90195 -17.24689 -16.95799 -16.42800 -16.19599 -15.77281 -15.53220 -15.03148 -14.86664 -14.84072 -14.28118 -14.06914 -13.96655 -13.60133 -13.33854 -13.27838 -12.84378 -12.74301 -12.56975 -12.39101 -12.20078 -11.82007 -11.59043 -11.39025 -11.33776 -11.11455 -11.09192 -11.08165 -10.81083 -10.46869 -9.87297 -9.60182 -9.39260 -9.15869 -9.10201 -8.31794 -6.57406 -6.27858 -3.98999 0.71517 1.24113 1.76809 1.86511 2.19220 2.88794 2.91109 3.17643 3.23554 3.27832 3.47065 3.55503 3.57664 3.94072 3.99061 4.06399 4.14441 4.17759 4.40969 4.57895 4.69292 4.74162 4.90468 5.01358 5.07856 5.23738 5.27764 5.29321 5.34950 5.42092 5.53237 5.60994 5.63160 5.76064 5.79384 6.04576 6.38949 6.66844 7.29156 7.47934 7.54543 7.93834 8.29507 8.41467 9.18009 10.79576 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.039056 B = 0.001640 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.738286 B =17071.587817 C =17445.988969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.059 6.059 10 C -0.155 4.155 11 C 0.537 3.463 12 O -0.513 6.513 13 N -0.731 5.731 14 C 0.138 3.862 15 H 0.111 0.889 16 C -0.146 4.146 17 C 0.091 3.909 18 N -0.609 5.609 19 C 0.521 3.479 20 O -0.518 6.518 21 C 0.116 3.884 22 N -0.129 5.129 23 N -0.302 5.302 24 C 0.147 3.853 25 N -0.283 5.283 26 N -0.048 5.048 27 C 0.104 3.896 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.237 0.763 39 H 0.079 0.921 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -25.891 -5.589 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.386 5.386 14 C 0.031 3.969 15 H 0.129 0.871 16 C -0.185 4.185 17 C -0.032 4.032 18 N -0.345 5.345 19 C 0.305 3.695 20 O -0.392 6.392 21 C -0.009 4.009 22 N -0.041 5.041 23 N -0.151 5.151 24 C -0.156 4.156 25 N -0.154 5.154 26 N -0.042 5.042 27 C -0.019 4.019 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.236 0.764 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.866 -26.121 -4.851 27.441 hybrid contribution 3.010 1.418 -0.271 3.338 sum 9.876 -24.703 -5.121 27.092 Atomic orbital electron populations 1.70024 1.05955 1.27426 1.46834 1.24993 0.95033 0.99066 0.94452 0.86113 0.79586 0.81829 0.77948 1.19611 1.20533 1.20529 1.22902 0.94956 0.91575 1.59022 0.90827 1.85390 1.04722 0.96407 1.96743 1.23541 1.06769 0.95090 1.05114 1.20357 0.86465 0.86227 0.74630 1.90710 1.15284 1.85493 1.47171 1.45968 1.10146 1.04456 1.78026 1.21833 0.97775 0.81363 0.95923 0.87104 1.23269 1.04749 0.92731 0.97728 1.22603 0.91791 0.98294 0.90496 1.48246 1.38098 1.14644 1.33496 1.19810 0.81180 0.83108 0.85359 1.90853 1.35255 1.81137 1.31993 1.21942 0.93295 0.84654 1.00962 1.49490 1.08710 1.20671 1.25199 1.74715 0.94989 1.20756 1.24635 1.27384 1.02566 0.91857 0.93774 1.75904 0.97293 1.21964 1.20260 1.79019 1.20810 0.97433 1.06963 1.22198 1.00334 0.83630 0.95741 0.92183 0.89057 0.89070 0.76448 0.88356 0.89727 0.89799 0.89759 0.83316 0.83519 0.74648 0.90322 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.86 6.16 36.00 0.22 -2.64 16 11 C 0.54 8.76 7.85 -10.99 -0.09 8.68 16 12 O -0.51 -10.34 15.50 5.55 0.09 -10.25 16 13 N -0.73 -7.91 5.18 -52.02 -0.27 -8.18 16 14 C 0.14 1.20 3.32 -66.09 -0.22 0.98 16 15 H 0.11 1.14 7.54 -51.92 -0.39 0.75 16 16 C -0.15 -0.94 6.77 -24.58 -0.17 -1.10 16 17 C 0.09 0.34 6.69 -2.53 -0.02 0.32 16 18 N -0.61 -3.99 3.33 -170.52 -0.57 -4.56 16 19 C 0.52 4.31 7.92 -10.99 -0.09 4.22 16 20 O -0.52 -6.91 16.76 5.55 0.09 -6.81 16 21 C 0.12 0.57 6.09 -5.19 -0.03 0.53 16 22 N -0.13 -1.16 3.49 -11.72 -0.04 -1.20 16 23 N -0.30 -2.81 12.13 29.34 0.36 -2.45 16 24 C 0.15 1.21 13.26 -91.58 -1.21 -0.01 16 25 N -0.28 -3.06 12.50 29.33 0.37 -2.69 16 26 N -0.05 -0.53 13.25 60.35 0.80 0.27 16 27 C 0.10 0.81 6.62 -3.06 -0.02 0.79 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 30 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 31 H 0.40 3.35 8.37 -40.82 -0.34 3.01 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.09 7.47 -51.93 -0.39 -0.30 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.15 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.15 0.24 7.85 -51.93 -0.41 -0.17 16 38 H 0.24 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.08 0.63 7.72 -51.93 -0.40 0.23 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -39.70 366.58 -6.43 -46.13 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.86 Total: -2.35 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.42 Total: -0.78 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 1.38 Total: -43.60 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.18 Total: -17.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.70 -6.43 -46.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703788368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.084 kcal (2) G-P(sol) polarization free energy of solvation -39.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds