Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48502 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46991 * 299.99595 * 3 2 1 6 6 H 1.48501 * 109.46940 * 59.99841 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 H 1.09008 * 110.64334 * 328.41743 * 14 13 11 16 16 C 1.55161 * 110.72256 * 91.75698 * 14 13 11 17 17 C 1.54910 * 101.58284 * 153.86606 * 16 14 13 18 18 N 1.47429 * 104.83088 * 322.98842 * 17 16 14 19 19 C 1.34769 * 125.64605 * 204.16441 * 18 17 16 20 20 O 1.21286 * 120.00050 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.00260 * 359.96111 * 19 18 17 22 22 N 1.46502 * 109.47273 * 179.97438 * 21 19 18 23 23 N 1.28878 * 125.45287 * 269.71827 * 22 21 19 24 24 C 1.31036 * 107.92027 * 179.89727 * 23 22 21 25 25 N 1.33322 * 106.89882 * 0.35894 * 24 23 22 26 26 N 1.28787 * 125.44908 * 90.02646 * 22 21 19 27 27 C 1.47018 * 108.70350 * 24.13179 * 18 17 16 28 28 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 30 30 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 31 31 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 32 32 H 1.09002 * 110.99906 * 271.93778 * 16 14 13 33 33 H 1.09004 * 111.00127 * 35.79050 * 16 14 13 34 34 H 1.08998 * 110.36539 * 204.15498 * 17 16 14 35 35 H 1.08998 * 110.45841 * 81.87633 * 17 16 14 36 36 H 1.09000 * 109.47411 * 299.99711 * 21 19 18 37 37 H 1.09005 * 109.47153 * 60.00054 * 21 19 18 38 38 H 1.07998 * 126.55287 * 180.13974 * 24 23 22 39 39 H 1.09002 * 109.88522 * 239.52207 * 27 18 17 40 40 H 1.09000 * 109.88347 * 118.35371 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 1 1.3842 -7.7684 0.5460 16 6 2.1732 -8.2494 -1.4407 17 6 2.3088 -9.7774 -1.2248 18 7 3.3283 -9.9203 -0.1694 19 6 4.1002 -11.0060 0.0351 20 8 4.9102 -11.0129 0.9378 21 6 3.9567 -12.2116 -0.8576 22 7 4.9000 -13.2489 -0.4328 23 7 6.1050 -13.3873 -0.8685 24 6 6.6382 -14.4176 -0.2593 25 7 5.7076 -14.9075 0.5601 26 7 4.6559 -14.1717 0.4316 27 6 3.3640 -8.6821 0.6224 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1245 -3.7313 -0.8893 31 1 3.8009 -6.1835 0.0004 32 1 1.1930 -7.9976 -1.8458 33 1 2.9686 -7.8736 -2.0843 34 1 2.6423 -10.2620 -2.1424 35 1 1.3601 -10.2014 -0.8958 36 1 2.9388 -12.5955 -0.7889 37 1 4.1692 -11.9278 -1.8884 38 1 7.6389 -14.7993 -0.3974 39 1 4.3592 -8.2402 0.5749 40 1 3.1004 -8.8967 1.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703788368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = 44.688386 kcal Electronic energy + Delta-G solvation = -25615.833542 eV Core-core repulsion = 21594.648207 eV Total energy + Delta-G solvation = -4021.185335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.37192 -41.55749 -40.55531 -38.66711 -36.05175 -35.40981 -34.58286 -34.13167 -32.49193 -30.75001 -30.68359 -28.85525 -27.64458 -25.15010 -24.97952 -23.83623 -22.59208 -21.73616 -20.90006 -19.86074 -19.13832 -18.81213 -18.13666 -17.72651 -17.40342 -17.04150 -16.87860 -16.45123 -16.35903 -16.23285 -15.79926 -15.33089 -14.93431 -14.80205 -14.61889 -14.43681 -14.13549 -13.80661 -13.65952 -13.47381 -13.15887 -13.04271 -12.96594 -12.91448 -12.71540 -12.56265 -12.28341 -12.06471 -11.94859 -11.75247 -11.71024 -11.15952 -11.12339 -10.97978 -10.27163 -10.19247 -9.92276 -8.65557 -8.35237 -6.12343 0.06048 0.76719 1.19659 1.24425 1.25772 1.40999 1.45012 1.55183 1.58411 1.70787 2.25799 2.31082 2.99303 2.99925 3.14150 3.31151 3.41642 3.46522 3.56214 3.84958 3.92916 3.96732 4.02636 4.13058 4.26957 4.31383 4.51775 4.53449 4.66921 4.71302 4.73685 4.77530 4.86825 5.05305 5.08556 5.13042 5.42490 5.43490 6.13450 6.19921 6.43524 6.71428 7.06949 7.20041 7.28690 8.73987 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.039056 B = 0.001640 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.738286 B =17071.587817 C =17445.988969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.133 4.133 11 C 0.542 3.458 12 O -0.557 6.557 13 N -0.707 5.707 14 C 0.134 3.866 15 H 0.094 0.906 16 C -0.142 4.142 17 C 0.093 3.907 18 N -0.603 5.603 19 C 0.520 3.480 20 O -0.578 6.578 21 C 0.110 3.890 22 N -0.126 5.126 23 N -0.316 5.316 24 C 0.149 3.851 25 N -0.313 5.313 26 N -0.072 5.072 27 C 0.109 3.891 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.416 0.584 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.186 0.814 37 H 0.187 0.813 38 H 0.274 0.726 39 H 0.079 0.921 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.934 -26.790 -7.178 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.284 4.284 11 C 0.328 3.672 12 O -0.435 6.435 13 N -0.361 5.361 14 C 0.028 3.972 15 H 0.112 0.888 16 C -0.181 4.181 17 C -0.028 4.028 18 N -0.336 5.336 19 C 0.307 3.693 20 O -0.457 6.457 21 C -0.012 4.012 22 N -0.038 5.038 23 N -0.165 5.165 24 C -0.154 4.154 25 N -0.184 5.184 26 N -0.066 5.066 27 C -0.015 4.015 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.254 0.746 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.143 0.857 35 H 0.120 0.880 36 H 0.203 0.797 37 H 0.204 0.796 38 H 0.289 0.711 39 H 0.097 0.903 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.647 -27.055 -6.464 29.130 hybrid contribution 2.498 1.621 0.218 2.986 sum 11.145 -25.434 -6.246 28.463 Atomic orbital electron populations 1.70179 1.07889 1.28526 1.48073 1.26081 0.95936 1.03204 0.93789 0.84940 0.78617 0.76557 0.78058 1.18145 1.19894 1.20081 1.23245 0.95357 0.92155 1.58718 0.89986 1.85521 1.10333 0.99065 1.97043 1.23390 1.03667 0.94494 1.06839 1.19942 0.86174 0.86385 0.74704 1.90702 1.17129 1.85916 1.49725 1.45675 1.10311 1.04335 1.75780 1.21931 0.97194 0.80024 0.98004 0.88806 1.23226 1.04595 0.94690 0.95573 1.22847 0.92020 0.96524 0.91368 1.48258 1.38090 1.13736 1.33552 1.20364 0.80140 0.83905 0.84910 1.90833 1.37880 1.82289 1.34684 1.22461 0.94528 0.82533 1.01670 1.49826 1.09006 1.20644 1.24349 1.74697 0.95355 1.21215 1.25255 1.28177 1.03546 0.91163 0.92505 1.75863 0.98033 1.22992 1.21495 1.78943 1.21343 0.98392 1.07929 1.22006 0.99809 0.84212 0.95425 0.91998 0.87436 0.87046 0.74648 0.89074 0.89142 0.85678 0.87983 0.79714 0.79596 0.71060 0.90278 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.70 13.22 21.65 0.29 -54.42 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.55 -30.37 9.50 67.95 0.65 -29.72 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 9 S -0.15 -7.79 20.57 -56.49 -1.16 -8.95 16 10 C -0.13 -4.83 6.16 71.24 0.44 -4.39 16 11 C 0.54 17.46 7.85 87.66 0.69 18.15 16 12 O -0.56 -22.89 15.50 -3.04 -0.05 -22.94 16 13 N -0.71 -14.32 5.18 -436.89 -2.26 -16.58 16 14 C 0.13 2.17 3.32 46.18 0.15 2.33 16 15 H 0.09 1.92 7.54 -2.38 -0.02 1.90 16 16 C -0.14 -1.47 6.77 31.99 0.22 -1.25 16 17 C 0.09 0.34 6.69 86.85 0.58 0.92 16 18 N -0.60 -6.36 3.33 -811.79 -2.70 -9.06 16 19 C 0.52 7.51 7.92 87.66 0.69 8.21 16 20 O -0.58 -15.14 16.76 -3.05 -0.05 -15.19 16 21 C 0.11 0.71 6.09 85.63 0.52 1.23 16 22 N -0.13 -2.02 3.49 -190.98 -0.67 -2.68 16 23 N -0.32 -5.31 12.13 -61.10 -0.74 -6.05 16 24 C 0.15 2.23 13.26 180.68 2.40 4.63 16 25 N -0.31 -6.57 12.50 -61.11 -0.76 -7.33 16 26 N -0.07 -1.51 13.25 37.02 0.49 -1.02 16 27 C 0.11 1.56 6.62 86.73 0.57 2.14 16 28 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 29 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 31 H 0.42 6.05 8.37 -92.71 -0.78 5.27 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 -0.47 7.47 -2.39 -0.02 -0.48 16 35 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.19 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.19 -0.33 7.85 -2.38 -0.02 -0.34 16 38 H 0.27 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.08 1.15 7.72 -2.39 -0.02 1.13 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -91.70 366.58 2.10 -89.60 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.32 Total: 6.35 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.37 Total: 3.52 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -6.36 Total: -97.14 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.10 Total: -38.12 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.95 kcal Total: -91.70 2.10 -89.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703788368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.286 kcal (2) G-P(sol) polarization free energy of solvation -91.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds