Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47024 * 125.64967 * 359.69284 * 13 11 10 15 15 C 1.54331 * 107.26488 * 178.85058 * 14 13 11 16 16 C 1.55162 * 103.02217 * 338.14016 * 15 14 13 17 17 H 1.08997 * 111.00509 * 277.23156 * 16 15 14 18 18 N 1.46898 * 111.00338 * 153.38130 * 16 15 14 19 19 C 1.46898 * 110.99998 * 161.35019 * 18 16 15 20 20 C 1.53001 * 109.47303 * 179.97438 * 19 18 16 21 21 C 1.50698 * 109.47021 * 180.02562 * 20 19 18 22 22 C 1.33384 * 125.20366 * 89.72419 * 21 20 19 23 23 C 1.38426 * 114.92633 * 179.85725 * 22 21 20 24 24 C 1.33394 * 114.91402 * 0.42684 * 23 22 21 25 25 S 1.75885 * 125.20307 * 270.02484 * 21 20 19 26 26 C 1.47429 * 125.64680 * 180.02562 * 13 11 10 27 27 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 29 29 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 30 30 H 1.08996 * 109.88590 * 298.39633 * 14 13 11 31 31 H 1.08995 * 109.87927 * 59.56159 * 14 13 11 32 32 H 1.09008 * 110.85183 * 219.67485 * 15 14 13 33 33 H 1.08996 * 110.67479 * 96.52385 * 15 14 13 34 34 H 1.00898 * 110.99990 * 37.39953 * 18 16 15 35 35 H 1.08999 * 109.47275 * 300.00386 * 19 18 16 36 36 H 1.09003 * 109.46796 * 59.99874 * 19 18 16 37 37 H 1.08999 * 109.47539 * 300.00553 * 20 19 18 38 38 H 1.09003 * 109.47029 * 60.00346 * 20 19 18 39 39 H 1.08005 * 122.53594 * 0.02562 * 22 21 20 40 40 H 1.07996 * 122.54291 * 180.20306 * 23 22 21 41 41 H 1.08001 * 125.19883 * 179.74584 * 24 23 22 42 42 H 1.08995 * 110.36645 * 322.93178 * 26 13 11 43 43 H 1.09004 * 110.36415 * 85.25283 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2273 -5.7161 0.0075 15 6 6.1962 -6.9169 -0.0246 16 6 7.4946 -6.3029 -0.6117 17 1 7.4502 -6.2623 -1.7000 18 7 8.6789 -7.0470 -0.1626 19 6 9.8326 -6.7736 -1.0298 20 6 11.0441 -7.5639 -0.5312 21 6 12.2277 -7.2829 -1.4206 22 6 13.1109 -6.3002 -1.2376 23 6 14.1193 -6.2384 -2.1839 24 6 14.0498 -7.1654 -3.1406 25 16 12.6517 -8.1960 -2.8628 26 6 7.4689 -4.8793 -0.0010 27 1 -0.4850 0.8401 0.0004 28 1 3.6440 -3.4315 0.8904 29 1 3.6433 -3.4318 -0.8896 30 1 4.6213 -5.7505 0.9129 31 1 4.5844 -5.7373 -0.8723 32 1 5.8152 -7.7058 -0.6733 33 1 6.3706 -7.2978 0.9816 34 1 8.4879 -8.0367 -0.1162 35 1 9.5983 -7.0730 -2.0514 36 1 10.0599 -5.7078 -1.0067 37 1 11.2782 -7.2641 0.4902 38 1 10.8170 -8.6298 -0.5540 39 1 13.0458 -5.6070 -0.4119 40 1 14.9008 -5.4937 -2.1523 41 1 14.7453 -7.2673 -3.9605 42 1 8.0475 -4.1915 -0.6176 43 1 7.8576 -4.8960 1.0173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713145821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -1.243939 kcal Electronic energy + Delta-G solvation = -23342.828967 eV Core-core repulsion = 19833.652320 eV Total energy + Delta-G solvation = -3509.176647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95709 -38.50971 -37.74748 -35.77927 -32.85194 -32.43103 -30.70771 -29.73498 -28.32659 -26.83749 -25.59578 -24.34966 -23.18916 -22.16171 -21.00681 -19.62563 -19.41628 -17.76264 -17.51491 -16.77712 -16.67171 -16.06400 -15.62321 -15.31320 -15.01881 -14.75428 -14.57967 -14.22737 -13.73973 -13.71982 -13.45836 -13.21018 -13.11663 -12.84254 -12.72119 -12.64952 -12.51434 -12.26990 -11.92433 -11.66677 -11.56050 -11.35832 -11.25485 -11.09234 -11.02867 -10.99260 -10.60101 -9.85262 -9.52527 -9.06157 -8.99594 -8.96135 -8.85665 -8.54912 -8.48852 -6.91301 -6.28316 -3.99976 0.58984 1.22983 1.59919 2.35882 2.67917 2.96099 3.17082 3.34106 3.51554 3.56799 3.72431 4.11426 4.34005 4.40456 4.49640 4.57577 4.68308 4.71109 4.73468 4.79040 4.99532 5.03942 5.10784 5.16965 5.19457 5.21866 5.27231 5.44710 5.46539 5.53981 5.54468 5.67979 5.73445 5.76057 5.83220 5.86880 5.91112 6.02430 6.09873 6.31398 6.59115 6.89325 7.59161 7.94738 8.42062 8.45103 9.17924 10.80831 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.001778 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.372124 B =15740.924216 C =16621.277606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.518 6.518 13 N -0.625 5.625 14 C 0.103 3.897 15 C -0.131 4.131 16 C 0.072 3.928 17 H 0.062 0.938 18 N -0.677 5.677 19 C 0.062 3.938 20 C -0.047 4.047 21 C -0.171 4.171 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.216 4.216 25 S 0.089 5.911 26 C 0.120 3.880 27 H 0.271 0.729 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.345 0.655 35 H 0.034 0.966 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.073 0.927 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.887 -22.162 -3.625 33.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.392 6.392 13 N -0.363 5.363 14 C -0.021 4.021 15 C -0.169 4.169 16 C -0.039 4.039 17 H 0.080 0.920 18 N -0.309 5.309 19 C -0.067 4.067 20 C -0.086 4.086 21 C -0.288 4.288 22 C -0.168 4.168 23 C -0.163 4.163 24 C -0.351 4.351 25 S 0.352 5.648 26 C -0.003 4.003 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.164 0.836 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.091 0.909 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 25.390 -21.350 -3.927 33.405 hybrid contribution -0.390 0.342 -0.160 0.543 sum 24.999 -21.008 -4.087 32.909 Atomic orbital electron populations 1.69941 1.05896 1.27748 1.48097 1.24711 0.94454 0.98956 0.93174 0.86734 0.81904 0.83265 0.79959 1.19183 1.15921 1.19945 1.22309 0.88229 0.97537 1.58766 0.89389 1.84792 1.09314 1.00096 1.97419 1.23253 0.93680 1.04177 1.05665 1.19976 0.90552 0.80608 0.75303 1.90706 1.58887 1.41192 1.48437 1.48398 1.07099 1.05283 1.75524 1.21970 0.94091 0.83490 1.02500 1.22792 0.94156 0.97209 1.02737 1.22672 0.89336 0.94223 0.97656 0.91981 1.60298 1.04213 1.13245 1.53134 1.22040 0.89526 1.01168 0.93987 1.20097 0.89939 1.00468 0.98113 1.24439 1.02420 1.01185 1.00799 1.20204 0.95284 0.99646 1.01631 1.20221 1.00557 1.00384 0.95103 1.25615 1.02891 1.01525 1.05099 1.84309 1.23281 1.34139 1.23060 1.22085 0.82641 0.93988 1.01631 0.91953 0.88552 0.88577 0.90829 0.91100 0.90021 0.89419 0.83598 0.94757 0.90207 0.88815 0.90807 0.84061 0.84229 0.81971 0.90856 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.96 27.74 -169.99 -4.72 17.24 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 10 C -0.12 -2.35 5.35 36.01 0.19 -2.16 16 11 C 0.55 10.35 7.87 -10.99 -0.09 10.27 16 12 O -0.52 -11.74 16.12 5.56 0.09 -11.65 16 13 N -0.63 -8.87 3.33 -170.50 -0.57 -9.43 16 14 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 15 C -0.13 -0.94 6.42 -24.89 -0.16 -1.10 16 16 C 0.07 0.60 3.32 -65.55 -0.22 0.39 16 17 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 18 N -0.68 -4.64 6.38 -104.45 -0.67 -5.31 16 19 C 0.06 0.43 5.54 -3.82 -0.02 0.41 16 20 C -0.05 -0.28 5.97 -27.88 -0.17 -0.45 16 21 C -0.17 -1.23 5.76 -36.01 -0.21 -1.44 16 22 C -0.14 -1.01 10.05 -41.21 -0.41 -1.43 16 23 C -0.13 -0.92 10.18 -41.21 -0.42 -1.33 16 24 C -0.22 -1.44 11.23 29.04 0.33 -1.11 16 25 S 0.09 0.62 23.33 -107.50 -2.51 -1.89 16 26 C 0.12 1.45 6.56 -2.52 -0.02 1.44 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 29 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.35 1.76 8.53 -39.29 -0.34 1.43 16 35 H 0.03 0.25 8.09 -51.93 -0.42 -0.17 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -34.33 385.13 -11.43 -45.76 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.66 Total: -1.42 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.00 Total: -7.57 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.46 Total: -40.60 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.24 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -4.50 Total: -7.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.33 -11.43 -45.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713145821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.517 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds